Wall clock time and date at job start Mon Mar 30 2020 01:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47480 * 2 1 4 4 N 1.40040 * 126.13937 * 274.88248 * 3 2 1 5 5 C 1.30963 * 108.82867 * 180.02562 * 4 3 2 6 6 C 1.39274 * 108.77459 * 359.73422 * 5 4 3 7 7 C 1.36622 * 126.13071 * 94.89956 * 3 2 1 8 8 C 1.47198 * 126.49113 * 359.97438 * 7 3 2 9 9 C 1.39587 * 120.53085 * 49.48654 * 8 7 3 10 10 C 1.37679 * 120.10986 * 179.97438 * 9 8 7 11 11 C 1.39406 * 121.24542 * 359.97438 * 10 9 8 12 12 O 1.35860 * 119.45808 * 180.02562 * 11 10 9 13 13 C 1.42902 * 116.99898 * 359.97438 * 12 11 10 14 14 C 1.37773 * 121.08142 * 0.02562 * 11 10 9 15 15 C 1.40772 * 119.80030 * 359.97438 * 14 11 10 16 16 C 1.40749 * 120.58807 * 179.72401 * 15 14 11 17 17 H 1.07997 * 120.00185 * 210.98146 * 16 15 14 18 18 C 1.40024 * 119.99718 * 30.98569 * 16 15 14 19 19 N 1.30802 * 120.00302 * 12.09250 * 18 16 15 20 20 Si 1.86802 * 119.99829 * 192.08936 * 18 16 15 21 21 H 1.48509 * 109.46916 * 60.00282 * 20 18 16 22 22 H 1.48505 * 109.47145 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47394 * 300.00085 * 20 18 16 24 24 H 1.08997 * 109.47212 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47384 * 300.00032 * 1 2 3 26 26 H 1.09000 * 109.46906 * 60.00085 * 1 2 3 27 27 H 1.09001 * 109.47095 * 240.00306 * 2 1 3 28 28 H 1.09002 * 109.47159 * 120.00378 * 2 1 3 29 29 H 1.08006 * 125.61215 * 180.02562 * 5 4 3 30 30 H 1.07996 * 126.18242 * 180.27080 * 6 5 4 31 31 H 1.08006 * 119.94301 * 359.96107 * 9 8 7 32 32 H 1.08001 * 119.37830 * 179.97438 * 10 9 8 33 33 H 1.09002 * 109.47047 * 180.02562 * 13 12 11 34 34 H 1.08995 * 109.47618 * 300.00281 * 13 12 11 35 35 H 1.09002 * 109.46812 * 60.00452 * 13 12 11 36 36 H 1.07999 * 120.09518 * 180.02562 * 14 11 10 37 37 H 0.96995 * 120.00065 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2030 2.1919 -1.1268 5 6 2.6516 3.3594 -0.7386 6 6 2.7698 3.3554 0.6491 7 6 2.3758 2.1092 1.0994 8 6 2.3419 1.6549 2.4991 9 6 2.9166 0.4360 2.8632 10 6 2.8803 0.0198 4.1750 11 6 2.2763 0.7955 5.1634 12 8 2.2618 0.3498 6.4467 13 6 2.8803 -0.9129 6.7020 14 6 1.6938 2.0066 4.8600 15 6 1.7052 2.4755 3.5328 16 6 1.1100 3.7077 3.2033 17 1 0.6716 3.8517 2.2269 18 6 1.0864 4.7468 4.1416 19 7 1.8137 4.6658 5.2258 20 14 0.0162 6.2489 3.8450 21 1 -1.4047 5.8307 3.7369 22 1 0.1679 7.1964 4.9784 23 1 0.4339 6.9133 2.5844 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.8864 4.1904 -1.3874 30 1 3.1103 4.1765 1.2624 31 1 3.3903 -0.1816 2.1144 32 1 3.3283 -0.9256 4.4435 33 1 2.7982 -1.1498 7.7627 34 1 2.3820 -1.6864 6.1177 35 1 3.9322 -0.8657 6.4202 36 1 1.2306 2.5948 5.6384 37 1 1.7976 5.3858 5.8755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240706110.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:35 Heat of formation + Delta-G solvation = 34.107676 kcal Electronic energy + Delta-G solvation = -20773.207851 eV Core-core repulsion = 17709.410148 eV Total energy + Delta-G solvation = -3063.797703 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.69863 -40.34789 -37.89033 -35.60974 -35.06241 -32.28089 -31.65539 -30.19025 -29.42537 -27.71128 -27.02134 -24.74702 -23.08790 -22.81951 -21.42596 -20.42051 -19.50516 -17.97016 -17.81539 -16.91665 -16.45579 -16.35308 -15.98820 -15.62440 -15.19076 -14.97357 -14.58397 -14.43121 -14.09996 -13.91999 -13.53889 -13.26189 -13.08474 -12.86445 -12.80294 -12.76014 -12.65243 -12.25034 -12.14293 -11.89998 -11.59851 -11.49372 -11.25303 -11.06793 -10.05335 -9.41809 -9.30521 -8.77052 -8.43216 -6.41105 0.53743 0.96667 1.33729 1.38457 1.49202 1.52419 1.82816 2.16533 2.19209 2.67663 2.77942 3.58696 3.73886 4.09466 4.16093 4.20780 4.26050 4.40885 4.48346 4.49235 4.54358 4.68291 4.76340 4.79493 4.91694 4.97609 5.06640 5.11078 5.18652 5.22283 5.43399 5.52544 5.78797 5.81543 5.99222 6.01381 6.07153 6.31562 6.48527 6.83907 6.84436 6.98481 6.99960 8.27207 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.011037 B = 0.009626 C = 0.005765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.217376 B = 2908.127641 C = 4855.566101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 N -0.379 5.379 4 N -0.337 5.337 5 C 0.042 3.958 6 C -0.286 4.286 7 C 0.173 3.827 8 C -0.210 4.210 9 C -0.034 4.034 10 C -0.315 4.315 11 C 0.143 3.857 12 O -0.350 6.350 13 C 0.025 3.975 14 C -0.228 4.228 15 C 0.146 3.854 16 C -0.456 4.456 17 H 0.076 0.924 18 C 0.040 3.960 19 N -0.810 5.810 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.265 1.265 23 H -0.258 1.258 24 H 0.104 0.896 25 H 0.037 0.963 26 H 0.055 0.945 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.206 0.794 30 H 0.130 0.870 31 H 0.119 0.881 32 H 0.131 0.869 33 H 0.115 0.885 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.004 -6.802 -3.143 7.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 N -0.163 5.163 4 N -0.160 5.160 5 C -0.141 4.141 6 C -0.315 4.315 7 C 0.046 3.954 8 C -0.214 4.214 9 C -0.053 4.053 10 C -0.335 4.335 11 C 0.098 3.902 12 O -0.264 6.264 13 C -0.069 4.069 14 C -0.248 4.248 15 C 0.142 3.858 16 C -0.485 4.485 17 H 0.094 0.906 18 C -0.177 4.177 19 N -0.435 5.435 20 Si 0.795 3.205 21 H -0.187 1.187 22 H -0.190 1.190 23 H -0.182 1.182 24 H 0.122 0.878 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.124 0.876 28 H 0.116 0.884 29 H 0.223 0.777 30 H 0.148 0.852 31 H 0.137 0.863 32 H 0.149 0.851 33 H 0.133 0.867 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.395 -7.450 -3.797 8.371 hybrid contribution 0.059 1.215 0.878 1.500 sum -0.336 -6.236 -2.919 6.893 Atomic orbital electron populations 1.22070 0.94058 1.03959 1.01496 1.21891 0.95818 0.77439 1.04765 1.49305 1.51210 1.12561 1.03175 1.77012 1.25717 1.04161 1.09065 1.23950 0.98936 0.96340 0.94888 1.21721 1.16503 0.98379 0.94890 1.19909 0.96150 0.91848 0.87508 1.19032 1.13099 0.99939 0.89304 1.20589 0.95831 0.93556 0.95362 1.20525 1.16064 1.03633 0.93260 1.19053 0.95041 0.93303 0.82761 1.85990 1.75875 1.38792 1.25784 1.23176 0.97419 0.82948 1.03383 1.20342 1.11161 0.95726 0.97591 1.18447 0.86705 0.91205 0.89398 1.19542 1.32218 0.96501 1.00215 0.90602 1.26721 0.94764 1.02882 0.93348 1.69851 1.30860 1.33824 1.08920 0.85348 0.79037 0.76729 0.79361 1.18660 1.18953 1.18164 0.87786 0.94390 0.92635 0.87623 0.88445 0.77723 0.85187 0.86325 0.85092 0.86669 0.92122 0.92654 0.88024 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.43 10.24 71.98 0.74 -3.69 16 2 C 0.12 3.66 7.03 86.38 0.61 4.27 16 3 N -0.38 -14.76 3.66 -334.77 -1.23 -15.98 16 4 N -0.34 -13.13 12.54 -57.34 -0.72 -13.85 16 5 C 0.04 1.56 11.97 85.07 1.02 2.58 16 6 C -0.29 -12.41 9.39 22.52 0.21 -12.19 16 7 C 0.17 7.66 5.94 40.75 0.24 7.90 16 8 C -0.21 -9.88 5.76 -18.43 -0.11 -9.99 16 9 C -0.03 -1.42 8.41 22.46 0.19 -1.23 16 10 C -0.32 -12.82 8.98 22.42 0.20 -12.61 16 11 C 0.14 6.64 6.66 22.44 0.15 6.79 16 12 O -0.35 -14.51 10.47 -91.97 -0.96 -15.48 16 13 C 0.03 0.70 9.79 113.37 1.11 1.81 16 14 C -0.23 -12.00 8.57 22.78 0.20 -11.80 16 15 C 0.15 7.69 5.67 -19.88 -0.11 7.58 16 16 C -0.46 -23.87 7.73 23.32 0.18 -23.69 16 17 H 0.08 4.00 7.05 -2.91 -0.02 3.98 16 18 C 0.04 1.98 5.22 85.28 0.45 2.42 16 19 N -0.81 -41.67 11.08 21.84 0.24 -41.43 16 20 Si 0.97 37.96 29.58 68.60 2.03 39.99 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 22 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 23 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 24 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.10 2.85 5.53 -2.39 -0.01 2.83 16 29 H 0.21 5.80 8.06 -2.91 -0.02 5.78 16 30 H 0.13 5.90 7.95 -2.91 -0.02 5.88 16 31 H 0.12 4.19 7.10 -2.91 -0.02 4.16 16 32 H 0.13 4.37 6.17 -2.91 -0.02 4.35 16 33 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.06 1.51 7.62 -2.39 -0.02 1.50 16 35 H 0.05 1.45 7.62 -2.39 -0.02 1.43 16 36 H 0.10 5.74 6.46 -2.91 -0.02 5.72 16 37 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 Total: -1.00 -63.11 312.57 5.51 -57.60 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 1.08 Total: 31.00 kcal Atomic # 6 Polarization: -46.92 SS G_CDS: 5.07 Total: -41.85 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -1.70 Total: -71.26 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.96 Total: -15.48 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -63.11 5.51 -57.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240706110.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.711 kcal (2) G-P(sol) polarization free energy of solvation -63.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds