Wall clock time and date at job start Mon Mar 30 2020 01:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21279 * 119.99914 * 2 1 4 4 N 1.34780 * 119.99630 * 179.97438 * 2 1 3 5 5 C 1.46982 * 121.32600 * 354.26851 * 4 2 1 6 6 C 1.50347 * 109.15184 * 223.38718 * 5 4 2 7 7 C 1.31779 * 123.34531 * 348.93372 * 6 5 4 8 8 C 1.47069 * 117.85680 * 180.80505 * 7 6 5 9 9 N 1.32799 * 120.01568 * 235.30806 * 8 7 6 10 10 C 1.31660 * 121.70042 * 179.97438 * 9 8 7 11 11 C 1.38946 * 121.53574 * 359.97438 * 10 9 8 12 12 C 1.36842 * 119.84452 * 0.28078 * 11 10 9 13 13 C 1.41144 * 118.41426 * 359.46146 * 12 11 10 14 14 C 1.40755 * 120.73523 * 180.23975 * 13 12 11 15 15 H 1.07999 * 120.00453 * 214.83062 * 14 13 12 16 16 C 1.40104 * 119.99881 * 34.83662 * 14 13 12 17 17 N 1.30758 * 119.99791 * 5.27126 * 16 14 13 18 18 Si 1.86795 * 120.00160 * 185.27565 * 16 14 13 19 19 H 1.48496 * 109.47330 * 89.99630 * 18 16 14 20 20 H 1.48500 * 109.47349 * 209.99770 * 18 16 14 21 21 H 1.48502 * 109.47141 * 329.99963 * 18 16 14 22 22 C 1.49993 * 124.29036 * 1.08176 * 7 6 5 23 23 C 1.47307 * 121.31538 * 174.28839 * 4 2 1 24 24 H 1.09001 * 109.46899 * 184.79341 * 1 2 3 25 25 H 1.08994 * 109.46935 * 304.78869 * 1 2 3 26 26 H 1.08993 * 109.47176 * 64.79333 * 1 2 3 27 27 H 1.09005 * 109.52424 * 103.48092 * 5 4 2 28 28 H 1.09004 * 109.52210 * 343.28895 * 5 4 2 29 29 H 1.08007 * 118.33136 * 168.95521 * 6 5 4 30 30 H 1.07999 * 119.22976 * 179.97438 * 10 9 8 31 31 H 1.07994 * 120.07160 * 180.02562 * 11 10 9 32 32 H 1.08002 * 120.79201 * 179.70291 * 12 11 10 33 33 H 0.97006 * 119.99985 * 180.02562 * 17 16 14 34 34 H 1.09002 * 109.31835 * 101.02058 * 22 7 6 35 35 H 1.08998 * 109.31726 * 220.44934 * 22 7 6 36 36 H 1.08994 * 109.75579 * 237.14153 * 23 4 2 37 37 H 1.09000 * 109.75950 * 357.85264 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4810 -2.4536 0.1265 6 6 2.2337 -3.3328 1.0861 7 6 3.4425 -3.0525 1.5296 8 6 4.0746 -4.0075 2.4523 9 7 4.5141 -3.5961 3.6360 10 6 5.0844 -4.4224 4.4876 11 6 5.2550 -5.7690 4.1904 12 6 4.8299 -6.2596 2.9857 13 6 4.2139 -5.3711 2.0783 14 6 3.7539 -5.8246 0.8277 15 1 3.8130 -5.1789 -0.0360 16 6 3.2190 -7.1135 0.7034 17 7 3.0517 -7.8572 1.7658 18 14 2.7450 -7.7697 -0.9800 19 1 3.9094 -8.4633 -1.5868 20 1 1.6175 -8.7259 -0.8392 21 1 2.3311 -6.6415 -1.8525 22 6 4.2137 -1.8203 1.1598 23 6 3.6482 -1.2044 -0.1247 24 1 -0.3633 -1.0241 0.0859 25 1 -0.3633 0.5863 0.8439 26 1 -0.3633 0.4376 -0.9297 27 1 1.4307 -2.9380 -0.8487 28 1 0.4720 -2.2840 0.5025 29 1 1.7597 -4.2406 1.4292 30 1 5.4277 -4.0448 5.4394 31 1 5.7256 -6.4259 4.9068 32 1 4.9591 -7.3026 2.7368 33 1 2.6818 -8.7498 1.6798 34 1 4.1465 -1.0957 1.9713 35 1 5.2594 -2.0835 1.0010 36 1 3.9293 -1.8126 -0.9844 37 1 4.0332 -0.1921 -0.2478 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241964863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:23 Heat of formation + Delta-G solvation = 4.245354 kcal Electronic energy + Delta-G solvation = -20690.513777 eV Core-core repulsion = 17625.421146 eV Total energy + Delta-G solvation = -3065.092630 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.87466 -38.56158 -36.77439 -34.11738 -33.24155 -31.31362 -30.66293 -29.58769 -28.94237 -25.97444 -24.87402 -23.10299 -21.50252 -21.27381 -19.71904 -17.41283 -17.28033 -16.92965 -15.84623 -15.54987 -15.22594 -14.83916 -14.46491 -13.95456 -13.85085 -13.33782 -13.27606 -12.99894 -12.68563 -12.39049 -12.18242 -12.02692 -11.78842 -11.53481 -11.43196 -11.38945 -11.18516 -11.01505 -10.66961 -10.39284 -9.88581 -9.65828 -9.44212 -8.58887 -8.45712 -8.10524 -7.97921 -7.40242 -6.86462 -4.56313 2.33817 2.72582 2.77801 2.97721 2.99873 3.09146 3.16946 3.25364 3.80420 4.55448 4.73651 5.09721 5.20555 5.35479 5.40874 5.44526 5.51845 5.65273 5.72698 5.78270 5.85511 6.05063 6.11534 6.17428 6.21774 6.47804 6.49045 6.65555 6.74565 6.86799 7.03615 7.10618 7.23163 7.60822 7.65180 7.72651 7.86149 7.88221 8.32247 8.35466 8.60300 8.66036 9.51224 10.05425 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.006772 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.402752 B = 4133.927094 C = 5402.887406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.515 3.485 3 O -0.559 6.559 4 N -0.610 5.610 5 C 0.146 3.854 6 C -0.183 4.183 7 C -0.006 4.006 8 C 0.017 3.983 9 N -0.459 5.459 10 C -0.027 4.027 11 C -0.154 4.154 12 C -0.122 4.122 13 C 0.086 3.914 14 C -0.445 4.445 15 H 0.084 0.916 16 C 0.073 3.927 17 N -0.802 5.802 18 Si 0.911 3.089 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.259 1.259 22 C -0.088 4.088 23 C 0.112 3.888 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.127 0.873 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.282 0.718 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.168 4.181 -4.612 7.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.304 3.696 3 O -0.438 6.438 4 N -0.343 5.343 5 C 0.024 3.976 6 C -0.203 4.203 7 C -0.008 4.008 8 C -0.121 4.121 9 N -0.167 5.167 10 C -0.187 4.187 11 C -0.175 4.175 12 C -0.148 4.148 13 C 0.082 3.918 14 C -0.475 4.475 15 H 0.102 0.898 16 C -0.144 4.144 17 N -0.428 5.428 18 Si 0.736 3.264 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.183 1.183 22 C -0.126 4.126 23 C -0.010 4.010 24 H 0.101 0.899 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.116 0.884 32 H 0.142 0.858 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.040 5.364 -4.306 7.978 hybrid contribution -0.098 -1.741 -0.676 1.871 sum -4.139 3.623 -4.983 7.422 Atomic orbital electron populations 1.21993 0.92197 1.04682 1.04846 1.20694 0.90504 0.82961 0.75463 1.90674 1.70767 1.31141 1.51245 1.48308 1.07908 1.06306 1.71811 1.20650 0.95714 0.82188 0.99079 1.22560 0.96220 1.00793 1.00742 1.18909 0.93300 0.93117 0.95430 1.19926 1.07075 0.92651 0.92478 1.67178 1.08012 1.38698 1.02784 1.21707 1.07258 0.90638 0.99110 1.21459 1.01914 0.96286 0.97810 1.21410 0.98659 1.00531 0.94204 1.18401 0.89027 0.90543 0.93852 1.19398 1.34771 0.98052 0.95264 0.89806 1.25934 0.94002 0.96149 0.98348 1.69717 1.33338 1.09586 1.30161 0.86237 0.78853 0.79410 0.81913 1.19343 1.20209 1.18316 1.20658 0.99383 0.95708 0.96842 1.21740 0.79205 1.02106 0.97942 0.89854 0.89033 0.88981 0.90701 0.89229 0.85539 0.86252 0.88386 0.85816 0.90671 0.90544 0.90500 0.91019 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 10.09 36.01 0.36 -1.49 16 2 C 0.51 7.83 7.82 -10.98 -0.09 7.74 16 3 O -0.56 -10.54 16.60 5.56 0.09 -10.45 16 4 N -0.61 -9.31 2.96 -174.05 -0.51 -9.82 16 5 C 0.15 2.07 6.36 -5.10 -0.03 2.03 16 6 C -0.18 -3.39 8.15 -36.37 -0.30 -3.69 16 7 C -0.01 -0.13 4.96 -103.27 -0.51 -0.64 16 8 C 0.02 0.41 6.09 -82.40 -0.50 -0.09 16 9 N -0.46 -11.06 10.27 -9.29 -0.10 -11.16 16 10 C -0.03 -0.61 11.16 -17.36 -0.19 -0.80 16 11 C -0.15 -3.47 10.03 -39.82 -0.40 -3.87 16 12 C -0.12 -3.00 8.68 -38.98 -0.34 -3.34 16 13 C 0.09 2.14 5.42 -106.37 -0.58 1.56 16 14 C -0.44 -10.61 7.01 -37.93 -0.27 -10.87 16 15 H 0.08 1.94 7.21 -52.49 -0.38 1.56 16 16 C 0.07 1.67 5.33 -17.31 -0.09 1.58 16 17 N -0.80 -19.27 11.03 55.56 0.61 -18.66 16 18 Si 0.91 17.28 29.56 -169.99 -5.03 12.25 16 19 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 21 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 22 C -0.09 -1.59 5.93 -28.09 -0.17 -1.75 16 23 C 0.11 1.77 6.49 -3.46 -0.02 1.75 16 24 H 0.08 0.73 5.34 -51.93 -0.28 0.45 16 25 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.09 1.04 5.57 -51.93 -0.29 0.75 16 29 H 0.13 2.58 7.28 -52.48 -0.38 2.20 16 30 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 31 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.12 3.10 6.60 -52.49 -0.35 2.75 16 33 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.08 1.38 8.13 -51.93 -0.42 0.95 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.09 1.40 7.09 -51.93 -0.37 1.04 16 LS Contribution 307.59 15.07 4.64 4.64 Total: -1.00 -28.92 307.59 -7.97 -36.89 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.56 Total: 8.19 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -3.12 Total: -11.88 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.00 Total: -39.64 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.92 -7.97 -36.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241964863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.139 kcal (2) G-P(sol) polarization free energy of solvation -28.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds