Wall clock time and date at job start Mon Mar 30 2020 01:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21279 * 119.99914 * 2 1 4 4 N 1.34780 * 119.99630 * 179.97438 * 2 1 3 5 5 C 1.46982 * 121.32600 * 354.26851 * 4 2 1 6 6 C 1.50347 * 109.15184 * 223.38718 * 5 4 2 7 7 C 1.31779 * 123.34531 * 348.93372 * 6 5 4 8 8 C 1.47069 * 117.85680 * 180.80505 * 7 6 5 9 9 N 1.32799 * 120.01568 * 235.30806 * 8 7 6 10 10 C 1.31660 * 121.70042 * 179.97438 * 9 8 7 11 11 C 1.38946 * 121.53574 * 359.97438 * 10 9 8 12 12 C 1.36842 * 119.84452 * 0.28078 * 11 10 9 13 13 C 1.41144 * 118.41426 * 359.46146 * 12 11 10 14 14 C 1.40755 * 120.73523 * 180.23975 * 13 12 11 15 15 H 1.07999 * 120.00453 * 214.83062 * 14 13 12 16 16 C 1.40104 * 119.99881 * 34.83662 * 14 13 12 17 17 N 1.30758 * 119.99791 * 5.27126 * 16 14 13 18 18 Si 1.86795 * 120.00160 * 185.27565 * 16 14 13 19 19 H 1.48496 * 109.47330 * 89.99630 * 18 16 14 20 20 H 1.48500 * 109.47349 * 209.99770 * 18 16 14 21 21 H 1.48502 * 109.47141 * 329.99963 * 18 16 14 22 22 C 1.49993 * 124.29036 * 1.08176 * 7 6 5 23 23 C 1.47307 * 121.31538 * 174.28839 * 4 2 1 24 24 H 1.09001 * 109.46899 * 184.79341 * 1 2 3 25 25 H 1.08994 * 109.46935 * 304.78869 * 1 2 3 26 26 H 1.08993 * 109.47176 * 64.79333 * 1 2 3 27 27 H 1.09005 * 109.52424 * 103.48092 * 5 4 2 28 28 H 1.09004 * 109.52210 * 343.28895 * 5 4 2 29 29 H 1.08007 * 118.33136 * 168.95521 * 6 5 4 30 30 H 1.07999 * 119.22976 * 179.97438 * 10 9 8 31 31 H 1.07994 * 120.07160 * 180.02562 * 11 10 9 32 32 H 1.08002 * 120.79201 * 179.70291 * 12 11 10 33 33 H 0.97006 * 119.99985 * 180.02562 * 17 16 14 34 34 H 1.09002 * 109.31835 * 101.02058 * 22 7 6 35 35 H 1.08998 * 109.31726 * 220.44934 * 22 7 6 36 36 H 1.08994 * 109.75579 * 237.14153 * 23 4 2 37 37 H 1.09000 * 109.75950 * 357.85264 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4810 -2.4536 0.1265 6 6 2.2337 -3.3328 1.0861 7 6 3.4425 -3.0525 1.5296 8 6 4.0746 -4.0075 2.4523 9 7 4.5141 -3.5961 3.6360 10 6 5.0844 -4.4224 4.4876 11 6 5.2550 -5.7690 4.1904 12 6 4.8299 -6.2596 2.9857 13 6 4.2139 -5.3711 2.0783 14 6 3.7539 -5.8246 0.8277 15 1 3.8130 -5.1789 -0.0360 16 6 3.2190 -7.1135 0.7034 17 7 3.0517 -7.8572 1.7658 18 14 2.7450 -7.7697 -0.9800 19 1 3.9094 -8.4633 -1.5868 20 1 1.6175 -8.7259 -0.8392 21 1 2.3311 -6.6415 -1.8525 22 6 4.2137 -1.8203 1.1598 23 6 3.6482 -1.2044 -0.1247 24 1 -0.3633 -1.0241 0.0859 25 1 -0.3633 0.5863 0.8439 26 1 -0.3633 0.4376 -0.9297 27 1 1.4307 -2.9380 -0.8487 28 1 0.4720 -2.2840 0.5025 29 1 1.7597 -4.2406 1.4292 30 1 5.4277 -4.0448 5.4394 31 1 5.7256 -6.4259 4.9068 32 1 4.9591 -7.3026 2.7368 33 1 2.6818 -8.7498 1.6798 34 1 4.1465 -1.0957 1.9713 35 1 5.2594 -2.0835 1.0010 36 1 3.9293 -1.8126 -0.9844 37 1 4.0332 -0.1921 -0.2478 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241964863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:22 Heat of formation + Delta-G solvation = -12.288990 kcal Electronic energy + Delta-G solvation = -20691.230759 eV Core-core repulsion = 17625.421146 eV Total energy + Delta-G solvation = -3065.809613 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.15510 -40.24642 -38.16618 -35.88927 -34.67204 -32.63612 -32.44489 -31.11570 -30.09009 -27.65570 -26.33759 -24.45533 -23.27394 -22.94015 -21.01033 -19.19541 -18.61943 -18.25809 -17.40291 -16.92270 -16.47982 -16.39128 -16.16704 -15.57247 -15.21257 -14.71448 -14.61432 -14.26682 -14.08366 -13.95739 -13.61019 -13.25352 -13.18476 -13.11938 -12.88918 -12.82196 -12.72103 -12.46664 -12.16539 -11.87743 -11.56878 -11.15360 -10.88001 -10.31372 -9.95091 -9.72819 -9.64805 -9.11007 -8.59819 -6.38608 0.61381 0.99444 1.43276 1.52246 1.56404 1.57426 1.63245 2.06889 2.21990 2.79744 3.59826 3.70019 3.83544 4.11399 4.12582 4.20144 4.31412 4.43675 4.49678 4.60886 4.67661 4.71436 4.74277 4.80163 4.84102 4.86034 5.04721 5.10930 5.15477 5.26775 5.38368 5.48583 5.62800 5.82344 5.94609 6.05379 6.27544 6.50451 6.55387 6.80878 6.85300 7.16376 7.69843 8.34077 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.006772 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.402752 B = 4133.927094 C = 5402.887406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.508 3.492 3 O -0.602 6.602 4 N -0.612 5.612 5 C 0.149 3.851 6 C -0.162 4.162 7 C -0.040 4.040 8 C 0.008 3.992 9 N -0.479 5.479 10 C -0.037 4.037 11 C -0.155 4.155 12 C -0.147 4.147 13 C 0.058 3.942 14 C -0.458 4.458 15 H 0.086 0.914 16 C 0.036 3.964 17 N -0.834 5.834 18 Si 0.979 3.021 19 H -0.269 1.269 20 H -0.272 1.272 21 H -0.246 1.246 22 C -0.076 4.076 23 C 0.118 3.882 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.100 0.900 28 H 0.125 0.875 29 H 0.105 0.895 30 H 0.147 0.853 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.288 0.712 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.936 4.330 -6.149 9.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.299 3.701 3 O -0.484 6.484 4 N -0.345 5.345 5 C 0.028 3.972 6 C -0.182 4.182 7 C -0.041 4.041 8 C -0.130 4.130 9 N -0.187 5.187 10 C -0.197 4.197 11 C -0.175 4.175 12 C -0.173 4.173 13 C 0.054 3.946 14 C -0.488 4.488 15 H 0.104 0.896 16 C -0.178 4.178 17 N -0.460 5.460 18 Si 0.800 3.200 19 H -0.194 1.194 20 H -0.197 1.197 21 H -0.169 1.169 22 C -0.114 4.114 23 C -0.005 4.005 24 H 0.123 0.877 25 H 0.118 0.882 26 H 0.130 0.870 27 H 0.118 0.882 28 H 0.143 0.857 29 H 0.123 0.877 30 H 0.165 0.835 31 H 0.144 0.856 32 H 0.129 0.871 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.812 5.510 -5.824 9.902 hybrid contribution 0.459 -1.807 -0.100 1.867 sum -5.353 3.703 -5.924 8.801 Atomic orbital electron populations 1.22038 0.88078 1.06452 1.06278 1.21597 0.92422 0.82004 0.74064 1.90657 1.72069 1.32555 1.53152 1.48417 1.07600 1.06923 1.71564 1.20830 0.96247 0.81027 0.99141 1.22726 0.95413 1.00164 0.99902 1.19031 0.94538 0.93961 0.96607 1.20463 1.06552 0.93177 0.92850 1.67263 1.08825 1.39325 1.03334 1.22218 1.06771 0.90736 0.99959 1.21720 1.01338 0.96802 0.97651 1.21455 1.00177 1.00165 0.95539 1.18771 0.89758 0.91353 0.94760 1.19524 1.35365 0.98924 0.94951 0.89612 1.26746 0.93370 0.95827 1.01876 1.69787 1.33844 1.10098 1.32266 0.85211 0.78445 0.79006 0.77314 1.19378 1.19673 1.16944 1.20500 0.98936 0.94425 0.97515 1.21638 0.80048 1.01880 0.96962 0.87705 0.88229 0.86951 0.88211 0.85749 0.87689 0.83532 0.85621 0.87061 0.90111 0.92254 0.91274 0.89577 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 10.09 71.24 0.72 -2.16 16 2 C 0.51 14.26 7.82 87.66 0.69 14.94 16 3 O -0.60 -22.07 16.60 -3.03 -0.05 -22.12 16 4 N -0.61 -17.28 2.96 -822.96 -2.43 -19.71 16 5 C 0.15 3.73 6.36 85.43 0.54 4.27 16 6 C -0.16 -5.81 8.15 24.82 0.20 -5.61 16 7 C -0.04 -1.65 4.96 -18.52 -0.09 -1.74 16 8 C 0.01 0.41 6.09 42.27 0.26 0.67 16 9 N -0.48 -23.48 10.27 -183.30 -1.88 -25.37 16 10 C -0.04 -1.70 11.16 84.89 0.95 -0.75 16 11 C -0.16 -7.04 10.03 22.11 0.22 -6.82 16 12 C -0.15 -7.44 8.68 22.66 0.20 -7.24 16 13 C 0.06 2.95 5.42 -21.00 -0.11 2.83 16 14 C -0.46 -22.02 7.01 23.34 0.16 -21.86 16 15 H 0.09 3.96 7.21 -2.91 -0.02 3.94 16 16 C 0.04 1.65 5.33 85.31 0.45 2.11 16 17 N -0.83 -40.45 11.03 21.85 0.24 -40.21 16 18 Si 0.98 34.43 29.56 68.60 2.03 36.46 16 19 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 20 H -0.27 -9.28 7.11 99.48 0.71 -8.57 16 21 H -0.25 -8.08 7.11 99.48 0.71 -7.38 16 22 C -0.08 -2.76 5.93 29.72 0.18 -2.58 16 23 C 0.12 3.58 6.49 86.31 0.56 4.14 16 24 H 0.10 1.29 5.34 -2.39 -0.01 1.28 16 25 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.11 1.50 8.14 -2.39 -0.02 1.49 16 27 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 28 H 0.12 2.30 5.57 -2.39 -0.01 2.29 16 29 H 0.11 4.25 7.28 -2.91 -0.02 4.23 16 30 H 0.15 5.67 8.06 -2.91 -0.02 5.64 16 31 H 0.13 4.84 8.06 -2.91 -0.02 4.81 16 32 H 0.11 5.78 6.60 -2.91 -0.02 5.76 16 33 H 0.29 12.75 8.29 -92.70 -0.77 11.98 16 34 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.07 2.55 8.13 -2.39 -0.02 2.53 16 36 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.09 2.69 7.09 -2.39 -0.02 2.67 16 Total: -1.00 -64.35 307.59 3.91 -60.44 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 1.08 Total: 30.30 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 4.92 Total: -19.79 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -4.07 Total: -85.29 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.05 Total: -22.12 kcal Atomic # 14 Polarization: 34.43 SS G_CDS: 2.03 Total: 36.46 kcal Total: -64.35 3.91 -60.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241964863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.148 kcal (2) G-P(sol) polarization free energy of solvation -64.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds