Wall clock time and date at job start Mon Mar 30 2020 01:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21282 * 119.99841 * 2 1 4 4 N 1.34772 * 120.00211 * 179.97438 * 2 1 3 5 5 C 1.46996 * 121.33506 * 354.10276 * 4 2 1 6 6 C 1.50342 * 109.15287 * 223.51769 * 5 4 2 7 7 C 1.31132 * 123.43098 * 348.96308 * 6 5 4 8 8 C 1.47783 * 117.81166 * 180.83816 * 7 6 5 9 9 C 1.39109 * 119.63501 * 184.81004 * 8 7 6 10 10 C 1.40807 * 118.74459 * 179.76027 * 9 8 7 11 11 C 1.41523 * 120.98044 * 180.25700 * 10 9 8 12 12 H 1.08007 * 120.00526 * 214.99523 * 11 10 9 13 13 C 1.40048 * 119.99868 * 34.99747 * 11 10 9 14 14 N 1.30726 * 120.00083 * 355.21634 * 13 11 10 15 15 Si 1.86806 * 120.00120 * 175.22077 * 13 11 10 16 16 H 1.48500 * 109.46934 * 59.99831 * 15 13 11 17 17 H 1.48498 * 109.47312 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46832 * 300.00059 * 15 13 11 19 19 C 1.41164 * 118.04370 * 0.50169 * 10 9 8 20 20 C 1.37758 * 119.10452 * 359.75759 * 19 10 9 21 21 N 1.31894 * 121.18510 * 359.97438 * 20 19 10 22 22 C 1.49985 * 124.38243 * 0.81156 * 7 6 5 23 23 C 1.47312 * 121.33744 * 174.38183 * 4 2 1 24 24 H 1.09000 * 109.46778 * 184.82881 * 1 2 3 25 25 H 1.09001 * 109.47103 * 304.82069 * 1 2 3 26 26 H 1.08995 * 109.47116 * 64.82444 * 1 2 3 27 27 H 1.09001 * 109.52150 * 343.42326 * 5 4 2 28 28 H 1.09001 * 109.51868 * 103.61804 * 5 4 2 29 29 H 1.08007 * 118.28136 * 168.93609 * 6 5 4 30 30 H 1.07996 * 120.62708 * 0.02562 * 9 8 7 31 31 H 0.97010 * 120.00347 * 179.97438 * 14 13 11 32 32 H 1.08000 * 120.44603 * 179.77785 * 19 10 9 33 33 H 1.08001 * 119.40108 * 179.97438 * 20 19 10 34 34 H 1.08997 * 109.31612 * 220.72458 * 22 7 6 35 35 H 1.09000 * 109.15839 * 101.19886 * 22 7 6 36 36 H 1.09001 * 109.76643 * 237.07493 * 23 4 2 37 37 H 1.09004 * 109.76357 * 357.84486 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4816 -2.4536 0.1301 6 6 2.2352 -3.3300 1.0915 7 6 3.4379 -3.0508 1.5330 8 6 4.0716 -4.0102 2.4614 9 6 5.3031 -3.7046 3.0317 10 6 5.8874 -4.6300 3.9176 11 6 7.1361 -4.3650 4.5287 12 1 7.8289 -5.1726 4.7142 13 6 7.4735 -3.0555 4.8930 14 7 6.6772 -2.0656 4.5849 15 14 9.0615 -2.7233 5.8190 16 1 10.2153 -3.1769 5.0016 17 1 9.1849 -1.2673 6.0836 18 1 9.0469 -3.4616 7.1074 19 6 5.1935 -5.8322 4.1743 20 6 3.9806 -6.0505 3.5586 21 7 3.4609 -5.1581 2.7381 22 6 4.2139 -1.8232 1.1584 23 6 3.6484 -1.2045 -0.1226 24 1 -0.3633 -1.0240 0.0865 25 1 -0.3633 0.5868 0.8437 26 1 -0.3633 0.4371 -0.9300 27 1 0.4727 -2.2835 0.5061 28 1 1.4312 -2.9404 -0.8439 29 1 1.7608 -4.2368 1.4369 30 1 5.7995 -2.7733 2.8026 31 1 6.9107 -1.1585 4.8376 32 1 5.6077 -6.5708 4.8447 33 1 3.4459 -6.9688 3.7513 34 1 5.2582 -2.0915 0.9987 35 1 4.1480 -1.0972 1.9688 36 1 3.9308 -1.8131 -0.9817 37 1 4.0340 -0.1923 -0.2445 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241966060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:25 Heat of formation + Delta-G solvation = 5.268313 kcal Electronic energy + Delta-G solvation = -20299.290875 eV Core-core repulsion = 17234.242603 eV Total energy + Delta-G solvation = -3065.048271 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.99511 -38.56947 -36.91536 -34.18793 -33.31903 -31.46346 -30.49825 -29.78967 -28.62845 -26.01496 -25.27830 -23.37744 -21.36656 -21.22154 -19.82839 -17.89490 -17.31834 -16.49591 -15.81440 -15.55622 -15.38073 -14.62686 -14.37106 -14.12023 -13.92426 -13.40751 -13.31205 -13.11383 -12.78218 -12.55458 -12.45643 -12.24552 -11.90211 -11.62920 -11.41112 -11.29223 -11.12154 -10.91400 -10.59115 -10.27692 -9.93728 -9.73704 -9.44472 -8.94853 -8.55573 -8.12313 -7.93571 -7.24583 -6.75410 -4.67497 1.97860 2.69513 2.78624 3.01422 3.03220 3.07030 3.11466 3.39324 3.86151 4.63557 4.65989 4.97106 5.03256 5.18163 5.33595 5.37495 5.39023 5.50260 5.58808 5.60107 5.75096 5.87460 5.97674 6.07549 6.24145 6.44127 6.58601 6.66540 6.77192 6.86867 6.96343 7.08980 7.20346 7.39217 7.54849 7.57537 7.85626 8.05143 8.23690 8.39353 8.67174 8.72808 9.44735 10.12609 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020574 B = 0.005105 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.606593 B = 5482.987807 C = 6585.430699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.514 3.486 3 O -0.554 6.554 4 N -0.613 5.613 5 C 0.143 3.857 6 C -0.185 4.185 7 C -0.034 4.034 8 C 0.121 3.879 9 C -0.178 4.178 10 C 0.122 3.878 11 C -0.463 4.463 12 H 0.079 0.921 13 C 0.074 3.926 14 N -0.804 5.804 15 Si 0.918 3.082 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.265 1.265 19 C -0.262 4.262 20 C 0.096 3.904 21 N -0.559 5.559 22 C -0.096 4.096 23 C 0.113 3.887 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.282 0.718 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.497 1.160 -7.123 10.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.303 3.697 3 O -0.433 6.433 4 N -0.347 5.347 5 C 0.021 3.979 6 C -0.205 4.205 7 C -0.035 4.035 8 C -0.010 4.010 9 C -0.200 4.200 10 C 0.114 3.886 11 C -0.495 4.495 12 H 0.098 0.902 13 C -0.143 4.143 14 N -0.431 5.431 15 Si 0.743 3.257 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.190 1.190 19 C -0.285 4.285 20 C -0.060 4.060 21 N -0.273 5.273 22 C -0.134 4.134 23 C -0.009 4.009 24 H 0.101 0.899 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.093 0.907 29 H 0.152 0.848 30 H 0.158 0.842 31 H 0.094 0.906 32 H 0.120 0.880 33 H 0.140 0.860 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.013 1.809 -7.501 11.124 hybrid contribution 1.537 0.117 1.166 1.933 sum -6.475 1.926 -6.335 9.262 Atomic orbital electron populations 1.21994 0.92104 1.04602 1.04975 1.20714 0.90526 0.82960 0.75452 1.90695 1.70720 1.31071 1.50791 1.48323 1.07938 1.06241 1.72169 1.20670 0.95917 0.82479 0.98790 1.22632 0.96551 1.01180 1.00161 1.19453 0.94335 0.93995 0.95734 1.19623 0.92847 0.91832 0.96662 1.22617 0.96207 1.02737 0.98485 1.17855 0.92606 0.90070 0.88075 1.19513 1.01166 0.93580 1.35227 0.90248 1.25915 0.97927 0.95603 0.94869 1.69667 1.35441 1.00892 1.37057 0.86200 0.81229 0.77954 0.80360 1.18862 1.20208 1.18955 1.22082 0.97884 1.01693 1.06795 1.21825 0.93551 0.96621 0.94037 1.67266 1.36490 1.03492 1.20042 1.20704 0.99901 0.95347 0.97404 1.21709 0.79050 1.02440 0.97682 0.89942 0.88943 0.88904 0.89032 0.90698 0.84770 0.84211 0.90649 0.87973 0.86020 0.89267 0.89924 0.91108 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 10.09 36.01 0.36 -1.34 16 2 C 0.51 7.48 7.82 -10.99 -0.09 7.39 16 3 O -0.55 -10.26 16.60 5.56 0.09 -10.17 16 4 N -0.61 -8.72 2.96 -174.15 -0.52 -9.24 16 5 C 0.14 1.77 6.36 -5.10 -0.03 1.74 16 6 C -0.19 -3.06 9.48 -36.23 -0.34 -3.40 16 7 C -0.03 -0.66 5.81 -102.82 -0.60 -1.26 16 8 C 0.12 2.82 6.67 -83.16 -0.56 2.26 16 9 C -0.18 -4.49 7.94 -38.29 -0.30 -4.79 16 10 C 0.12 3.17 5.57 -106.56 -0.59 2.58 16 11 C -0.46 -11.90 9.10 -37.65 -0.34 -12.25 16 12 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 13 C 0.07 1.81 5.44 -17.34 -0.09 1.71 16 14 N -0.80 -20.21 10.69 55.55 0.59 -19.62 16 15 Si 0.92 18.34 29.56 -169.99 -5.03 13.32 16 16 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 17 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 18 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 19 C -0.26 -6.24 9.90 -38.65 -0.38 -6.62 16 20 C 0.10 2.14 11.15 -17.70 -0.20 1.94 16 21 N -0.56 -12.90 9.00 -10.04 -0.09 -12.99 16 22 C -0.10 -1.69 5.00 -28.18 -0.14 -1.83 16 23 C 0.11 1.70 6.48 -3.55 -0.02 1.68 16 24 H 0.08 0.62 5.34 -51.93 -0.28 0.34 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 0.90 5.57 -51.93 -0.29 0.61 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.13 2.33 7.02 -52.48 -0.37 1.96 16 30 H 0.14 3.56 4.74 -52.49 -0.25 3.31 16 31 H 0.28 6.55 8.29 -40.82 -0.34 6.22 16 32 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 33 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 34 H 0.09 1.60 7.06 -51.93 -0.37 1.23 16 35 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 1.44 7.09 -51.93 -0.37 1.07 16 LS Contribution 306.75 15.07 4.62 4.62 Total: -1.00 -30.10 306.75 -8.08 -38.18 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -4.42 Total: 8.10 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -3.33 Total: -12.19 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -0.01 Total: -41.85 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.10 -8.08 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241966060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.445 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds