Wall clock time and date at job start Mon Mar 30 2020 01:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21282 * 119.99841 * 2 1 4 4 N 1.34772 * 120.00211 * 179.97438 * 2 1 3 5 5 C 1.46996 * 121.33506 * 354.10276 * 4 2 1 6 6 C 1.50342 * 109.15287 * 223.51769 * 5 4 2 7 7 C 1.31132 * 123.43098 * 348.96308 * 6 5 4 8 8 C 1.47783 * 117.81166 * 180.83816 * 7 6 5 9 9 C 1.39109 * 119.63501 * 184.81004 * 8 7 6 10 10 C 1.40807 * 118.74459 * 179.76027 * 9 8 7 11 11 C 1.41523 * 120.98044 * 180.25700 * 10 9 8 12 12 H 1.08007 * 120.00526 * 214.99523 * 11 10 9 13 13 C 1.40048 * 119.99868 * 34.99747 * 11 10 9 14 14 N 1.30726 * 120.00083 * 355.21634 * 13 11 10 15 15 Si 1.86806 * 120.00120 * 175.22077 * 13 11 10 16 16 H 1.48500 * 109.46934 * 59.99831 * 15 13 11 17 17 H 1.48498 * 109.47312 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46832 * 300.00059 * 15 13 11 19 19 C 1.41164 * 118.04370 * 0.50169 * 10 9 8 20 20 C 1.37758 * 119.10452 * 359.75759 * 19 10 9 21 21 N 1.31894 * 121.18510 * 359.97438 * 20 19 10 22 22 C 1.49985 * 124.38243 * 0.81156 * 7 6 5 23 23 C 1.47312 * 121.33744 * 174.38183 * 4 2 1 24 24 H 1.09000 * 109.46778 * 184.82881 * 1 2 3 25 25 H 1.09001 * 109.47103 * 304.82069 * 1 2 3 26 26 H 1.08995 * 109.47116 * 64.82444 * 1 2 3 27 27 H 1.09001 * 109.52150 * 343.42326 * 5 4 2 28 28 H 1.09001 * 109.51868 * 103.61804 * 5 4 2 29 29 H 1.08007 * 118.28136 * 168.93609 * 6 5 4 30 30 H 1.07996 * 120.62708 * 0.02562 * 9 8 7 31 31 H 0.97010 * 120.00347 * 179.97438 * 14 13 11 32 32 H 1.08000 * 120.44603 * 179.77785 * 19 10 9 33 33 H 1.08001 * 119.40108 * 179.97438 * 20 19 10 34 34 H 1.08997 * 109.31612 * 220.72458 * 22 7 6 35 35 H 1.09000 * 109.15839 * 101.19886 * 22 7 6 36 36 H 1.09001 * 109.76643 * 237.07493 * 23 4 2 37 37 H 1.09004 * 109.76357 * 357.84486 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4816 -2.4536 0.1301 6 6 2.2352 -3.3300 1.0915 7 6 3.4379 -3.0508 1.5330 8 6 4.0716 -4.0102 2.4614 9 6 5.3031 -3.7046 3.0317 10 6 5.8874 -4.6300 3.9176 11 6 7.1361 -4.3650 4.5287 12 1 7.8289 -5.1726 4.7142 13 6 7.4735 -3.0555 4.8930 14 7 6.6772 -2.0656 4.5849 15 14 9.0615 -2.7233 5.8190 16 1 10.2153 -3.1769 5.0016 17 1 9.1849 -1.2673 6.0836 18 1 9.0469 -3.4616 7.1074 19 6 5.1935 -5.8322 4.1743 20 6 3.9806 -6.0505 3.5586 21 7 3.4609 -5.1581 2.7381 22 6 4.2139 -1.8232 1.1584 23 6 3.6484 -1.2045 -0.1226 24 1 -0.3633 -1.0240 0.0865 25 1 -0.3633 0.5868 0.8437 26 1 -0.3633 0.4371 -0.9300 27 1 0.4727 -2.2835 0.5061 28 1 1.4312 -2.9404 -0.8439 29 1 1.7608 -4.2368 1.4369 30 1 5.7995 -2.7733 2.8026 31 1 6.9107 -1.1585 4.8376 32 1 5.6077 -6.5708 4.8447 33 1 3.4459 -6.9688 3.7513 34 1 5.2582 -2.0915 0.9987 35 1 4.1480 -1.0972 1.9688 36 1 3.9308 -1.8131 -0.9817 37 1 4.0340 -0.1923 -0.2445 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241966060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:25 Heat of formation + Delta-G solvation = -12.529473 kcal Electronic energy + Delta-G solvation = -20300.062644 eV Core-core repulsion = 17234.242603 eV Total energy + Delta-G solvation = -3065.820041 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.21810 -40.24649 -38.27831 -36.00258 -34.72707 -32.86580 -32.16989 -31.14521 -29.88480 -27.88061 -26.58448 -24.75897 -23.05691 -22.90830 -21.09235 -19.57438 -18.49243 -17.96863 -17.32889 -16.99538 -16.59236 -16.21803 -16.06329 -15.73247 -15.29129 -14.86151 -14.52089 -14.43769 -14.28322 -14.21618 -13.65547 -13.42046 -13.15870 -12.96324 -12.90342 -12.80654 -12.71102 -12.46007 -12.08195 -11.96877 -11.62782 -11.24875 -10.91115 -10.51264 -9.97801 -9.83128 -9.72604 -8.91664 -8.58065 -6.62551 0.33116 0.98959 1.35910 1.44398 1.48340 1.60281 1.74043 2.02985 2.17230 2.81018 3.54209 3.65240 3.69088 3.93207 4.06503 4.13073 4.23551 4.32871 4.50159 4.62199 4.66193 4.69201 4.71463 4.79332 4.86925 4.95879 5.02663 5.06255 5.16260 5.24119 5.36071 5.43448 5.46518 5.61507 5.94899 6.09818 6.20062 6.46533 6.51234 6.78322 6.82074 7.13991 7.61187 8.29901 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020574 B = 0.005105 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.606593 B = 5482.987807 C = 6585.430699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.505 3.495 3 O -0.604 6.604 4 N -0.616 5.616 5 C 0.142 3.858 6 C -0.142 4.142 7 C -0.081 4.081 8 C 0.122 3.878 9 C -0.210 4.210 10 C 0.091 3.909 11 C -0.497 4.497 12 H 0.081 0.919 13 C 0.033 3.967 14 N -0.833 5.833 15 Si 0.990 3.010 16 H -0.257 1.257 17 H -0.270 1.270 18 H -0.260 1.260 19 C -0.280 4.280 20 C 0.096 3.904 21 N -0.562 5.562 22 C -0.081 4.081 23 C 0.120 3.880 24 H 0.110 0.890 25 H 0.097 0.903 26 H 0.113 0.887 27 H 0.131 0.869 28 H 0.113 0.887 29 H 0.132 0.868 30 H 0.126 0.874 31 H 0.287 0.713 32 H 0.115 0.885 33 H 0.161 0.839 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.572 0.620 -8.063 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.297 3.703 3 O -0.486 6.486 4 N -0.349 5.349 5 C 0.022 3.978 6 C -0.162 4.162 7 C -0.082 4.082 8 C -0.009 4.009 9 C -0.232 4.232 10 C 0.083 3.917 11 C -0.528 4.528 12 H 0.099 0.901 13 C -0.181 4.181 14 N -0.461 5.461 15 Si 0.810 3.190 16 H -0.181 1.181 17 H -0.194 1.194 18 H -0.184 1.184 19 C -0.303 4.303 20 C -0.060 4.060 21 N -0.276 5.276 22 C -0.120 4.120 23 C -0.003 4.003 24 H 0.128 0.872 25 H 0.115 0.885 26 H 0.131 0.869 27 H 0.148 0.852 28 H 0.130 0.870 29 H 0.150 0.850 30 H 0.143 0.857 31 H 0.097 0.903 32 H 0.133 0.867 33 H 0.178 0.822 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.114 1.232 -8.447 13.235 hybrid contribution 2.027 0.219 1.393 2.470 sum -8.086 1.450 -7.054 10.828 Atomic orbital electron populations 1.22039 0.87710 1.06683 1.06256 1.21696 0.92566 0.82040 0.74013 1.90677 1.72145 1.32793 1.52969 1.48465 1.07443 1.07190 1.71760 1.21009 0.96393 0.80922 0.99500 1.23001 0.94795 1.00685 0.97751 1.19449 0.96142 0.94642 0.98007 1.20173 0.92196 0.92350 0.96180 1.22589 0.97782 1.02740 1.00137 1.18293 0.93471 0.91343 0.88571 1.19806 1.01768 0.94597 1.36658 0.90094 1.26814 1.01183 0.94863 0.95265 1.69772 1.37137 1.01327 1.37815 0.85124 0.76882 0.78016 0.78938 1.18080 1.19442 1.18425 1.22298 0.98738 1.01438 1.07776 1.22420 0.93111 0.97604 0.92839 1.67416 1.36322 1.03512 1.20359 1.20489 0.99319 0.94332 0.97824 1.21574 0.80172 1.01882 0.96687 0.87199 0.88457 0.86903 0.85193 0.86973 0.85010 0.85655 0.90268 0.86706 0.82168 0.90890 0.93019 0.88922 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 10.09 71.24 0.72 -1.81 16 2 C 0.51 13.59 7.82 87.66 0.69 14.28 16 3 O -0.60 -22.19 16.60 -3.04 -0.05 -22.24 16 4 N -0.62 -16.02 2.96 -823.28 -2.44 -18.46 16 5 C 0.14 2.86 6.36 85.43 0.54 3.40 16 6 C -0.14 -4.33 9.48 25.40 0.24 -4.09 16 7 C -0.08 -3.15 5.81 -17.73 -0.10 -3.25 16 8 C 0.12 5.81 6.67 41.71 0.28 6.09 16 9 C -0.21 -11.16 7.94 23.11 0.18 -10.97 16 10 C 0.09 4.94 5.57 -21.12 -0.12 4.82 16 11 C -0.50 -26.61 9.10 23.52 0.21 -26.39 16 12 H 0.08 4.13 7.85 -2.91 -0.02 4.10 16 13 C 0.03 1.66 5.44 85.30 0.46 2.12 16 14 N -0.83 -43.90 10.69 21.84 0.23 -43.67 16 15 Si 0.99 38.28 29.56 68.60 2.03 40.31 16 16 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 17 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 18 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 19 C -0.28 -13.57 9.90 22.87 0.23 -13.34 16 20 C 0.10 4.21 11.15 84.57 0.94 5.15 16 21 N -0.56 -25.65 9.00 -185.66 -1.67 -27.32 16 22 C -0.08 -3.00 5.00 29.65 0.15 -2.85 16 23 C 0.12 3.54 6.48 86.25 0.56 4.10 16 24 H 0.11 1.00 5.34 -2.39 -0.01 0.99 16 25 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.13 1.74 5.57 -2.39 -0.01 1.73 16 28 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.13 4.15 7.02 -2.91 -0.02 4.13 16 30 H 0.13 6.89 4.74 -2.91 -0.01 6.87 16 31 H 0.29 13.88 8.29 -92.70 -0.77 13.11 16 32 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 33 H 0.16 5.67 8.06 -2.91 -0.02 5.64 16 34 H 0.07 2.84 7.06 -2.39 -0.02 2.82 16 35 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.08 2.62 7.09 -2.39 -0.02 2.60 16 Total: -1.00 -69.64 306.75 4.18 -65.46 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 1.09 Total: 28.67 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 4.98 Total: -22.75 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -3.88 Total: -89.45 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.05 Total: -22.24 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal Total: -69.64 4.18 -65.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241966060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.931 kcal (2) G-P(sol) polarization free energy of solvation -69.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds