Wall clock time and date at job start Mon Mar 30 2020 01:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21277 * 120.00483 * 2 1 4 4 N 1.34776 * 119.99657 * 179.97438 * 2 1 3 5 5 C 1.46988 * 121.34099 * 354.93336 * 4 2 1 6 6 C 1.50348 * 109.15985 * 223.26164 * 5 4 2 7 7 C 1.31097 * 123.43028 * 348.94070 * 6 5 4 8 8 C 1.47836 * 117.80746 * 180.81857 * 7 6 5 9 9 C 1.39900 * 120.43433 * 114.99321 * 8 7 6 10 10 N 1.31880 * 121.12418 * 180.02562 * 9 8 7 11 11 C 1.31529 * 122.14582 * 0.02562 * 10 9 8 12 12 C 1.40789 * 120.71003 * 0.02562 * 11 10 9 13 13 C 1.41440 * 120.59859 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00272 * 156.76572 * 13 12 11 15 15 C 1.39937 * 119.99790 * 336.77499 * 13 12 11 16 16 N 1.30826 * 119.99832 * 340.07823 * 15 13 12 17 17 Si 1.86799 * 119.99936 * 160.08170 * 15 13 12 18 18 H 1.48497 * 109.47217 * 94.98641 * 17 15 13 19 19 H 1.48504 * 109.46989 * 214.98524 * 17 15 13 20 20 H 1.48495 * 109.47345 * 334.98338 * 17 15 13 21 21 C 1.39335 * 120.43079 * 295.32686 * 8 7 6 22 22 C 1.49987 * 124.38431 * 1.09056 * 7 6 5 23 23 C 1.47314 * 121.33744 * 174.95098 * 4 2 1 24 24 H 1.09003 * 109.47313 * 174.65134 * 1 2 3 25 25 H 1.09005 * 109.46833 * 294.65192 * 1 2 3 26 26 H 1.08999 * 109.47077 * 54.64992 * 1 2 3 27 27 H 1.08999 * 109.52810 * 103.35357 * 5 4 2 28 28 H 1.09001 * 109.52134 * 343.16041 * 5 4 2 29 29 H 1.07994 * 118.28668 * 168.95702 * 6 5 4 30 30 H 1.07999 * 119.43525 * 359.97438 * 9 8 7 31 31 H 1.07994 * 119.64803 * 179.97438 * 11 10 9 32 32 H 0.97006 * 120.00188 * 179.97438 * 16 15 13 33 33 H 1.08004 * 120.96419 * 359.97438 * 21 8 7 34 34 H 1.09001 * 109.31058 * 101.04410 * 22 7 6 35 35 H 1.09000 * 109.31473 * 220.46177 * 22 7 6 36 36 H 1.09002 * 109.76506 * 237.33858 * 23 4 2 37 37 H 1.09001 * 109.76334 * 358.10582 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4800 -2.4545 0.1120 6 6 2.2249 -3.3404 1.0716 7 6 3.4237 -3.0662 1.5257 8 6 4.0488 -4.0348 2.4512 9 6 5.2041 -4.7291 2.0762 10 7 5.7726 -5.5965 2.8908 11 6 5.2897 -5.8539 4.0869 12 6 4.1298 -5.2035 4.5492 13 6 3.6123 -5.4824 5.8356 14 1 2.9859 -4.7577 6.3345 15 6 3.9120 -6.6973 6.4620 16 7 4.3212 -7.7164 5.7510 17 14 3.7276 -6.8640 8.3134 18 1 2.3944 -7.4369 8.6285 19 1 4.7884 -7.7613 8.8377 20 1 3.8537 -5.5264 8.9459 21 6 3.4911 -4.2733 3.7056 22 6 4.2012 -1.8328 1.1737 23 6 3.6493 -1.2042 -0.1102 24 1 -0.3634 -1.0232 -0.0958 25 1 -0.3633 0.4287 0.9341 26 1 -0.3633 0.5946 -0.8382 27 1 1.4376 -2.9322 -0.8668 28 1 0.4680 -2.2875 0.4810 29 1 1.7475 -4.2502 1.4040 30 1 5.6372 -4.5523 1.1028 31 1 5.7878 -6.5724 4.7209 32 1 4.5294 -8.5585 6.1852 33 1 2.5970 -3.7575 4.0234 34 1 4.1280 -1.1152 1.9909 35 1 5.2478 -2.0973 1.0227 36 1 3.9389 -1.8047 -0.9725 37 1 4.0363 -0.1911 -0.2191 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241968526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:37 Heat of formation + Delta-G solvation = 0.416175 kcal Electronic energy + Delta-G solvation = -19994.724511 eV Core-core repulsion = 16929.465836 eV Total energy + Delta-G solvation = -3065.258676 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.13402 -38.54307 -37.11808 -34.25398 -33.50462 -31.67237 -30.70292 -29.80007 -28.81739 -25.66155 -25.23485 -23.46662 -21.71667 -21.25808 -20.01192 -17.88185 -17.43742 -16.55276 -15.94852 -15.62662 -15.50225 -15.22325 -14.60396 -14.35807 -13.92085 -13.60443 -13.45065 -13.13269 -13.00001 -12.51842 -12.23065 -12.04371 -11.87658 -11.62589 -11.57745 -11.49055 -11.29091 -11.00957 -10.85411 -10.66918 -10.09177 -9.88445 -9.43488 -8.84327 -8.72256 -8.29416 -7.82332 -7.49787 -6.98794 -4.55219 2.19910 2.56305 2.65199 2.87421 2.95503 2.99118 3.03051 3.12970 3.80457 4.49160 4.51839 4.88615 4.92380 5.11075 5.16949 5.24054 5.24850 5.38029 5.45673 5.62171 5.66214 5.76464 5.83404 6.01927 6.09119 6.13185 6.36402 6.43668 6.61828 6.74504 6.87804 6.99224 7.20431 7.23523 7.41133 7.53307 7.69297 7.99040 8.09792 8.24179 8.61652 8.64816 9.66160 9.98525 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028499 B = 0.004010 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.238606 B = 6980.798716 C = 7502.112469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.516 3.484 3 O -0.554 6.554 4 N -0.613 5.613 5 C 0.145 3.855 6 C -0.197 4.197 7 C -0.034 4.034 8 C -0.090 4.090 9 C -0.030 4.030 10 N -0.476 5.476 11 C 0.043 3.957 12 C 0.064 3.936 13 C -0.452 4.452 14 H 0.081 0.919 15 C 0.077 3.923 16 N -0.785 5.785 17 Si 0.911 3.089 18 H -0.269 1.269 19 H -0.273 1.273 20 H -0.259 1.259 21 C -0.183 4.183 22 C -0.096 4.096 23 C 0.112 3.888 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.149 0.851 32 H 0.286 0.714 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.571 6.924 -7.734 12.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.305 3.695 3 O -0.433 6.433 4 N -0.347 5.347 5 C 0.023 3.977 6 C -0.216 4.216 7 C -0.035 4.035 8 C -0.092 4.092 9 C -0.184 4.184 10 N -0.184 5.184 11 C -0.122 4.122 12 C 0.060 3.940 13 C -0.482 4.482 14 H 0.099 0.901 15 C -0.143 4.143 16 N -0.410 5.410 17 Si 0.734 3.266 18 H -0.194 1.194 19 H -0.197 1.197 20 H -0.183 1.183 21 C -0.209 4.209 22 C -0.133 4.133 23 C -0.010 4.010 24 H 0.100 0.900 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.166 0.834 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.448 6.817 -8.037 11.864 hybrid contribution -0.957 -0.017 1.220 1.551 sum -6.406 6.800 -6.817 11.565 Atomic orbital electron populations 1.21986 0.91934 1.04580 1.05163 1.20737 0.90585 0.82880 0.75306 1.90693 1.70728 1.31064 1.50798 1.48301 1.07753 1.06216 1.72465 1.20612 0.95906 0.82334 0.98833 1.22492 0.96439 1.01242 1.01383 1.19601 0.94037 0.94170 0.95676 1.19523 0.97329 0.97667 0.94690 1.21767 0.96644 1.00425 0.99596 1.67093 1.32177 1.14127 1.04969 1.23012 0.94837 1.02080 0.92221 1.18461 0.91502 0.90916 0.93163 1.19528 1.27370 1.01277 1.00024 0.90056 1.25974 0.92457 0.94903 1.00948 1.69785 1.31402 1.01804 1.37969 0.86249 0.78937 0.79571 0.81794 1.19412 1.19741 1.18250 1.21386 1.00808 1.05139 0.93549 1.20772 0.99893 0.95195 0.97487 1.21731 0.79238 1.02444 0.97613 0.89965 0.88777 0.88861 0.90604 0.88933 0.86117 0.86480 0.83418 0.90306 0.88057 0.90348 0.89531 0.90890 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 9.98 36.00 0.36 -1.16 16 2 C 0.52 6.77 7.82 -10.99 -0.09 6.68 16 3 O -0.55 -9.44 16.60 5.56 0.09 -9.34 16 4 N -0.61 -7.75 2.96 -174.06 -0.52 -8.26 16 5 C 0.15 1.59 6.28 -5.10 -0.03 1.56 16 6 C -0.20 -2.90 9.46 -36.22 -0.34 -3.24 16 7 C -0.03 -0.57 5.30 -102.78 -0.54 -1.12 16 8 C -0.09 -1.92 5.08 -104.94 -0.53 -2.45 16 9 C -0.03 -0.68 10.74 -16.91 -0.18 -0.86 16 10 N -0.48 -12.11 10.32 -12.24 -0.13 -12.23 16 11 C 0.04 1.12 9.90 -16.72 -0.17 0.96 16 12 C 0.06 1.66 5.59 -106.71 -0.60 1.06 16 13 C -0.45 -11.47 9.07 -37.73 -0.34 -11.81 16 14 H 0.08 1.97 7.92 -52.49 -0.42 1.56 16 15 C 0.08 1.83 5.11 -17.34 -0.09 1.74 16 16 N -0.79 -19.47 11.02 55.55 0.61 -18.86 16 17 Si 0.91 17.73 29.60 -169.99 -5.03 12.69 16 18 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 19 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 21 C -0.18 -4.32 9.57 -38.17 -0.37 -4.68 16 22 C -0.10 -1.42 5.95 -28.10 -0.17 -1.59 16 23 C 0.11 1.45 6.49 -3.47 -0.02 1.42 16 24 H 0.08 0.54 5.53 -51.93 -0.29 0.25 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 0.81 5.72 -51.93 -0.30 0.51 16 29 H 0.12 1.88 7.94 -52.49 -0.42 1.46 16 30 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 31 H 0.15 3.99 6.15 -52.49 -0.32 3.66 16 32 H 0.29 6.40 8.30 -40.82 -0.34 6.06 16 33 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.09 1.24 7.96 -51.93 -0.41 0.83 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.24 7.08 -51.93 -0.37 0.87 16 LS Contribution 311.58 15.07 4.70 4.70 Total: -1.00 -29.90 311.58 -8.00 -37.89 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -4.61 Total: 6.90 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -3.11 Total: -13.49 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: -0.03 Total: -39.35 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.90 -8.00 -37.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241968526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.309 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds