Wall clock time and date at job start Mon Mar 30 2020 01:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21277 * 120.00483 * 2 1 4 4 N 1.34776 * 119.99657 * 179.97438 * 2 1 3 5 5 C 1.46988 * 121.34099 * 354.93336 * 4 2 1 6 6 C 1.50348 * 109.15985 * 223.26164 * 5 4 2 7 7 C 1.31097 * 123.43028 * 348.94070 * 6 5 4 8 8 C 1.47836 * 117.80746 * 180.81857 * 7 6 5 9 9 C 1.39900 * 120.43433 * 114.99321 * 8 7 6 10 10 N 1.31880 * 121.12418 * 180.02562 * 9 8 7 11 11 C 1.31529 * 122.14582 * 0.02562 * 10 9 8 12 12 C 1.40789 * 120.71003 * 0.02562 * 11 10 9 13 13 C 1.41440 * 120.59859 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00272 * 156.76572 * 13 12 11 15 15 C 1.39937 * 119.99790 * 336.77499 * 13 12 11 16 16 N 1.30826 * 119.99832 * 340.07823 * 15 13 12 17 17 Si 1.86799 * 119.99936 * 160.08170 * 15 13 12 18 18 H 1.48497 * 109.47217 * 94.98641 * 17 15 13 19 19 H 1.48504 * 109.46989 * 214.98524 * 17 15 13 20 20 H 1.48495 * 109.47345 * 334.98338 * 17 15 13 21 21 C 1.39335 * 120.43079 * 295.32686 * 8 7 6 22 22 C 1.49987 * 124.38431 * 1.09056 * 7 6 5 23 23 C 1.47314 * 121.33744 * 174.95098 * 4 2 1 24 24 H 1.09003 * 109.47313 * 174.65134 * 1 2 3 25 25 H 1.09005 * 109.46833 * 294.65192 * 1 2 3 26 26 H 1.08999 * 109.47077 * 54.64992 * 1 2 3 27 27 H 1.08999 * 109.52810 * 103.35357 * 5 4 2 28 28 H 1.09001 * 109.52134 * 343.16041 * 5 4 2 29 29 H 1.07994 * 118.28668 * 168.95702 * 6 5 4 30 30 H 1.07999 * 119.43525 * 359.97438 * 9 8 7 31 31 H 1.07994 * 119.64803 * 179.97438 * 11 10 9 32 32 H 0.97006 * 120.00188 * 179.97438 * 16 15 13 33 33 H 1.08004 * 120.96419 * 359.97438 * 21 8 7 34 34 H 1.09001 * 109.31058 * 101.04410 * 22 7 6 35 35 H 1.09000 * 109.31473 * 220.46177 * 22 7 6 36 36 H 1.09002 * 109.76506 * 237.33858 * 23 4 2 37 37 H 1.09001 * 109.76334 * 358.10582 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4800 -2.4545 0.1120 6 6 2.2249 -3.3404 1.0716 7 6 3.4237 -3.0662 1.5257 8 6 4.0488 -4.0348 2.4512 9 6 5.2041 -4.7291 2.0762 10 7 5.7726 -5.5965 2.8908 11 6 5.2897 -5.8539 4.0869 12 6 4.1298 -5.2035 4.5492 13 6 3.6123 -5.4824 5.8356 14 1 2.9859 -4.7577 6.3345 15 6 3.9120 -6.6973 6.4620 16 7 4.3212 -7.7164 5.7510 17 14 3.7276 -6.8640 8.3134 18 1 2.3944 -7.4369 8.6285 19 1 4.7884 -7.7613 8.8377 20 1 3.8537 -5.5264 8.9459 21 6 3.4911 -4.2733 3.7056 22 6 4.2012 -1.8328 1.1737 23 6 3.6493 -1.2042 -0.1102 24 1 -0.3634 -1.0232 -0.0958 25 1 -0.3633 0.4287 0.9341 26 1 -0.3633 0.5946 -0.8382 27 1 1.4376 -2.9322 -0.8668 28 1 0.4680 -2.2875 0.4810 29 1 1.7475 -4.2502 1.4040 30 1 5.6372 -4.5523 1.1028 31 1 5.7878 -6.5724 4.7209 32 1 4.5294 -8.5585 6.1852 33 1 2.5970 -3.7575 4.0234 34 1 4.1280 -1.1152 1.9909 35 1 5.2478 -2.0973 1.0227 36 1 3.9389 -1.8047 -0.9725 37 1 4.0363 -0.1911 -0.2191 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241968526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:36 Heat of formation + Delta-G solvation = -17.184090 kcal Electronic energy + Delta-G solvation = -19995.487716 eV Core-core repulsion = 16929.465836 eV Total energy + Delta-G solvation = -3066.021881 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.20726 -40.23815 -38.38002 -35.98134 -34.91387 -32.90463 -32.36231 -31.08298 -29.95170 -27.54155 -26.43805 -24.59169 -23.42602 -23.02425 -21.12483 -19.51259 -18.47464 -17.90914 -17.41225 -17.02283 -16.96603 -16.48361 -16.32252 -15.74566 -15.07521 -14.76689 -14.72900 -14.39301 -14.15718 -13.74389 -13.58240 -13.43248 -13.30383 -13.02752 -12.92266 -12.87102 -12.77003 -12.62863 -12.40737 -12.06610 -11.63613 -11.21864 -10.92406 -10.32515 -10.14516 -9.81594 -9.56275 -9.22657 -8.79493 -6.48345 0.60676 0.89760 1.31548 1.38760 1.49557 1.55423 1.59713 2.02427 2.16808 2.67567 3.56997 3.66224 3.77341 4.00802 4.06358 4.15532 4.22278 4.31091 4.47519 4.53303 4.60983 4.67110 4.70308 4.74637 4.75615 4.82472 4.97431 5.09315 5.10152 5.15779 5.28730 5.42499 5.50076 5.67225 5.80967 5.97483 6.13752 6.33146 6.44980 6.73729 6.74647 7.13178 7.75008 8.20680 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028499 B = 0.004010 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.238606 B = 6980.798716 C = 7502.112469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.508 3.492 3 O -0.602 6.602 4 N -0.616 5.616 5 C 0.146 3.854 6 C -0.167 4.167 7 C -0.068 4.068 8 C -0.072 4.072 9 C -0.040 4.040 10 N -0.493 5.493 11 C 0.009 3.991 12 C 0.041 3.959 13 C -0.484 4.484 14 H 0.084 0.916 15 C 0.039 3.961 16 N -0.816 5.816 17 Si 0.986 3.014 18 H -0.259 1.259 19 H -0.265 1.265 20 H -0.258 1.258 21 C -0.198 4.198 22 C -0.086 4.086 23 C 0.116 3.884 24 H 0.108 0.892 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.126 0.874 29 H 0.114 0.886 30 H 0.144 0.856 31 H 0.132 0.868 32 H 0.295 0.705 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.687 7.370 -8.595 14.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.299 3.701 3 O -0.484 6.484 4 N -0.349 5.349 5 C 0.025 3.975 6 C -0.185 4.185 7 C -0.069 4.069 8 C -0.074 4.074 9 C -0.196 4.196 10 N -0.200 5.200 11 C -0.154 4.154 12 C 0.036 3.964 13 C -0.513 4.513 14 H 0.102 0.898 15 C -0.178 4.178 16 N -0.441 5.441 17 Si 0.806 3.194 18 H -0.183 1.183 19 H -0.189 1.189 20 H -0.182 1.182 21 C -0.223 4.223 22 C -0.124 4.124 23 C -0.007 4.007 24 H 0.127 0.873 25 H 0.118 0.882 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.143 0.857 29 H 0.132 0.868 30 H 0.161 0.839 31 H 0.149 0.851 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.576 7.235 -8.904 13.748 hybrid contribution -0.346 -0.147 1.352 1.403 sum -7.922 7.088 -7.552 13.040 Atomic orbital electron populations 1.22033 0.88133 1.06654 1.06101 1.21595 0.92395 0.82096 0.74009 1.90675 1.72052 1.32705 1.52955 1.48440 1.07628 1.06874 1.71934 1.20871 0.96338 0.80927 0.99372 1.22777 0.95056 1.00928 0.99779 1.19505 0.95498 0.94704 0.97193 1.19846 0.96186 0.96984 0.94394 1.22291 0.97278 0.99839 1.00161 1.67025 1.32897 1.15086 1.05031 1.22776 0.95958 1.03631 0.93007 1.18759 0.91747 0.91771 0.94106 1.19808 1.28570 1.02301 1.00611 0.89837 1.26856 0.91446 0.93923 1.05602 1.69833 1.31601 1.02507 1.40134 0.85126 0.79384 0.79521 0.75360 1.18298 1.18887 1.18175 1.21610 1.01301 1.05054 0.94357 1.20648 0.99879 0.93899 0.97981 1.21671 0.79863 1.02092 0.97060 0.87346 0.88157 0.87460 0.87419 0.85659 0.86825 0.83881 0.85118 0.89445 0.87300 0.92095 0.89538 0.88860 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.98 71.23 0.71 -1.53 16 2 C 0.51 12.02 7.82 87.66 0.69 12.71 16 3 O -0.60 -19.89 16.60 -3.02 -0.05 -19.94 16 4 N -0.62 -13.64 2.96 -823.00 -2.44 -16.07 16 5 C 0.15 2.53 6.28 85.43 0.54 3.07 16 6 C -0.17 -4.42 9.46 25.44 0.24 -4.18 16 7 C -0.07 -2.20 5.30 -17.68 -0.09 -2.30 16 8 C -0.07 -3.07 5.08 -20.07 -0.10 -3.17 16 9 C -0.04 -1.84 10.74 85.09 0.91 -0.92 16 10 N -0.49 -25.77 10.32 -192.63 -1.99 -27.76 16 11 C 0.01 0.48 9.90 85.36 0.85 1.33 16 12 C 0.04 2.18 5.59 -21.22 -0.12 2.06 16 13 C -0.48 -25.25 9.07 23.47 0.21 -25.03 16 14 H 0.08 4.15 7.92 -2.91 -0.02 4.13 16 15 C 0.04 1.88 5.11 85.25 0.44 2.31 16 16 N -0.82 -41.54 11.02 21.82 0.24 -41.30 16 17 Si 0.99 36.39 29.60 68.60 2.03 38.42 16 18 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 19 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 20 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 21 C -0.20 -9.47 9.57 23.18 0.22 -9.25 16 22 C -0.09 -2.47 5.95 29.71 0.18 -2.30 16 23 C 0.12 2.76 6.49 86.30 0.56 3.32 16 24 H 0.11 0.82 5.53 -2.39 -0.01 0.80 16 25 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.13 1.46 5.72 -2.39 -0.01 1.45 16 29 H 0.11 3.23 7.94 -2.91 -0.02 3.21 16 30 H 0.14 5.63 8.06 -2.91 -0.02 5.60 16 31 H 0.13 7.49 6.15 -2.91 -0.02 7.47 16 32 H 0.29 13.42 8.30 -92.70 -0.77 12.65 16 33 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.09 2.42 7.96 -2.39 -0.02 2.40 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 37 H 0.08 2.19 7.08 -2.39 -0.02 2.17 16 Total: -1.00 -68.08 311.58 4.10 -63.98 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 1.08 Total: 26.56 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: 5.23 Total: -23.89 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -4.18 Total: -85.12 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.05 Total: -19.94 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Total: -68.08 4.10 -63.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241968526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.797 kcal (2) G-P(sol) polarization free energy of solvation -68.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds