Wall clock time and date at job start Mon Mar 30 2020 01:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21280 * 119.99964 * 2 1 4 4 N 1.34769 * 120.00098 * 179.97438 * 2 1 3 5 5 C 1.46993 * 121.33539 * 359.97438 * 4 2 1 6 6 C 1.50343 * 109.15713 * 223.26714 * 5 4 2 7 7 C 1.31117 * 123.43284 * 348.94349 * 6 5 4 8 8 C 1.47801 * 117.81285 * 180.81287 * 7 6 5 9 9 C 1.40236 * 120.83830 * 114.99853 * 8 7 6 10 10 C 1.38457 * 119.39776 * 180.02562 * 9 8 7 11 11 N 1.31491 * 121.16898 * 359.97438 * 10 9 8 12 12 C 1.33657 * 121.84613 * 0.02562 * 11 10 9 13 13 C 1.41431 * 119.77623 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00737 * 187.07694 * 13 12 11 15 15 C 1.40034 * 119.99610 * 7.07626 * 13 12 11 16 16 N 1.30742 * 120.00217 * 182.55914 * 15 13 12 17 17 Si 1.86807 * 120.00131 * 2.55643 * 15 13 12 18 18 H 1.48500 * 109.47061 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.46970 * 300.00431 * 17 15 13 20 20 H 1.48498 * 109.46749 * 59.99912 * 17 15 13 21 21 C 1.39515 * 120.84292 * 295.29656 * 8 7 6 22 22 C 1.49989 * 124.37828 * 1.09646 * 7 6 5 23 23 C 1.47307 * 121.33817 * 180.02562 * 4 2 1 24 24 H 1.09000 * 109.47308 * 239.99896 * 1 2 3 25 25 H 1.09005 * 109.47327 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47068 * 120.00043 * 1 2 3 27 27 H 1.09002 * 109.52010 * 103.36526 * 5 4 2 28 28 H 1.08999 * 109.52505 * 343.17546 * 5 4 2 29 29 H 1.08002 * 118.28267 * 168.95607 * 6 5 4 30 30 H 1.07995 * 120.30088 * 359.97438 * 9 8 7 31 31 H 1.07994 * 119.41432 * 179.97438 * 10 9 8 32 32 H 0.96999 * 119.99756 * 354.84727 * 16 15 13 33 33 H 1.08003 * 120.59557 * 359.97438 * 21 8 7 34 34 H 1.09000 * 109.31770 * 101.04136 * 22 7 6 35 35 H 1.09006 * 109.31610 * 220.46198 * 22 7 6 36 36 H 1.09003 * 109.76829 * 237.32387 * 23 4 2 37 37 H 1.09002 * 109.76722 * 358.09679 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4758 -2.4569 0.0017 6 6 2.1469 -3.3852 0.9754 7 6 3.3074 -3.1331 1.5313 8 6 3.8617 -4.1421 2.4582 9 6 5.0457 -4.8277 2.1501 10 6 5.5381 -5.7673 3.0399 11 7 4.9156 -6.0277 4.1685 12 6 3.7844 -5.4032 4.5103 13 6 3.1514 -5.7170 5.7355 14 1 2.1812 -5.3015 5.9641 15 6 3.7829 -6.5666 6.6522 16 7 3.1766 -6.8968 7.7625 17 14 5.4917 -7.2282 6.2889 18 1 5.9343 -8.0976 7.4085 19 1 5.4598 -8.0174 5.0313 20 1 6.4395 -6.0950 6.1381 21 6 3.2171 -4.4410 3.6588 22 6 4.1072 -1.8866 1.2941 23 6 3.6536 -1.2015 0.0011 24 1 -0.3634 -0.5138 0.8900 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 1.5091 -2.8911 -0.9976 28 1 0.4384 -2.3047 0.2993 29 1 1.6471 -4.3081 1.2303 30 1 5.5681 -4.6252 1.2269 31 1 6.4496 -6.2957 2.8028 32 1 2.3224 -6.4953 7.9865 33 1 2.3008 -3.9382 3.9308 34 1 3.9707 -1.2054 2.1339 35 1 5.1628 -2.1458 1.2117 36 1 4.0095 -1.7640 -0.8621 37 1 4.0460 -0.1852 -0.0330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241969821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:43 Heat of formation + Delta-G solvation = -8.995134 kcal Electronic energy + Delta-G solvation = -20090.304133 eV Core-core repulsion = 17024.637353 eV Total energy + Delta-G solvation = -3065.666781 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23351 -38.82669 -37.32665 -34.28989 -33.51912 -31.75798 -30.54991 -30.29095 -29.30584 -25.82394 -25.30670 -23.60104 -22.12808 -21.03987 -20.13551 -18.54968 -17.56385 -16.92516 -16.10653 -15.66461 -15.53063 -15.13714 -14.55726 -14.10678 -14.07323 -13.72547 -13.52461 -13.11985 -13.02920 -12.66187 -12.57623 -12.52423 -12.28791 -12.18588 -11.87828 -11.52026 -11.01339 -10.77481 -10.58859 -10.12975 -9.97797 -9.66266 -9.35235 -9.04952 -8.81926 -8.26593 -8.05131 -7.74578 -7.28395 -4.85928 1.98296 2.47909 2.48835 2.62857 2.84855 3.59627 3.64689 4.00662 4.40738 4.41598 4.55550 4.74361 4.93920 4.97896 5.00873 5.08695 5.16346 5.24872 5.32667 5.47000 5.55834 5.62610 5.64805 5.71828 5.86500 5.98769 6.14675 6.31727 6.36534 6.44716 6.51402 6.89846 6.99111 7.15176 7.29137 7.32119 7.39784 7.58615 8.00247 8.01107 8.21655 8.56575 9.40906 9.94998 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032626 B = 0.004192 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.996729 B = 6678.105726 C = 7129.709162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.515 3.485 3 O -0.552 6.552 4 N -0.615 5.615 5 C 0.147 3.853 6 C -0.189 4.189 7 C -0.044 4.044 8 C 0.006 3.994 9 C -0.303 4.303 10 C 0.152 3.848 11 N -0.575 5.575 12 C 0.250 3.750 13 C -0.473 4.473 14 H 0.081 0.919 15 C 0.043 3.957 16 N -0.803 5.803 17 Si 1.156 2.844 18 H -0.333 1.333 19 H -0.279 1.279 20 H -0.294 1.294 21 C -0.244 4.244 22 C -0.095 4.095 23 C 0.112 3.888 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.283 0.717 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.495 7.378 -14.371 16.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.305 3.695 3 O -0.430 6.430 4 N -0.349 5.349 5 C 0.025 3.975 6 C -0.208 4.208 7 C -0.045 4.045 8 C 0.000 4.000 9 C -0.327 4.327 10 C -0.009 4.009 11 N -0.295 5.295 12 C 0.128 3.872 13 C -0.504 4.504 14 H 0.099 0.901 15 C -0.178 4.178 16 N -0.424 5.424 17 Si 0.991 3.009 18 H -0.266 1.266 19 H -0.207 1.207 20 H -0.222 1.222 21 C -0.266 4.266 22 C -0.133 4.133 23 C -0.010 4.010 24 H 0.108 0.892 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.139 0.861 30 H 0.122 0.878 31 H 0.146 0.854 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.875 6.375 -13.141 14.726 hybrid contribution -1.839 1.536 -1.040 2.612 sum -3.714 7.912 -14.182 16.659 Atomic orbital electron populations 1.21947 0.91783 1.05361 1.04250 1.20756 0.90644 0.82808 0.75324 1.90699 1.70847 1.30980 1.50517 1.48270 1.07337 1.06049 1.73239 1.20550 0.96144 0.82059 0.98770 1.22523 0.96841 1.00904 1.00516 1.19641 0.94531 0.94381 0.95911 1.18926 0.94272 0.93584 0.93219 1.21135 1.01043 1.07380 1.03105 1.22031 0.96461 0.92917 0.89457 1.66505 1.12780 1.30451 1.19722 1.18587 0.88043 0.87779 0.92840 1.20801 1.04602 1.25213 0.99811 0.90131 1.27859 1.06795 0.91937 0.91233 1.70656 1.15982 1.33281 1.22499 0.81790 0.70564 0.76174 0.72354 1.26641 1.20679 1.22185 1.21732 1.03052 1.05135 0.96708 1.20751 1.00093 0.94606 0.97861 1.21710 0.79372 1.02381 0.97531 0.89189 0.89065 0.89408 0.90432 0.89009 0.86065 0.87808 0.85408 0.90599 0.87790 0.90239 0.89404 0.90908 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 8.75 36.01 0.32 -1.09 16 2 C 0.52 6.46 7.83 -10.99 -0.09 6.37 16 3 O -0.55 -9.09 16.57 5.56 0.09 -9.00 16 4 N -0.61 -7.28 2.96 -174.09 -0.52 -7.80 16 5 C 0.15 1.47 6.49 -5.10 -0.03 1.44 16 6 C -0.19 -2.56 9.47 -36.23 -0.34 -2.90 16 7 C -0.04 -0.70 5.33 -102.80 -0.55 -1.24 16 8 C 0.01 0.12 5.10 -104.76 -0.53 -0.42 16 9 C -0.30 -5.92 9.73 -38.75 -0.38 -6.30 16 10 C 0.15 3.25 11.16 -17.62 -0.20 3.05 16 11 N -0.58 -14.37 4.53 -11.22 -0.05 -14.42 16 12 C 0.25 6.42 6.39 -85.03 -0.54 5.87 16 13 C -0.47 -12.78 9.58 -37.69 -0.36 -13.14 16 14 H 0.08 2.17 8.05 -52.49 -0.42 1.75 16 15 C 0.04 1.17 5.52 -17.34 -0.10 1.07 16 16 N -0.80 -21.79 13.65 55.55 0.76 -21.03 16 17 Si 1.16 28.31 25.56 -169.99 -4.34 23.96 16 18 H -0.33 -8.05 7.11 56.52 0.40 -7.65 16 19 H -0.28 -6.77 6.67 56.52 0.38 -6.39 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 C -0.24 -5.55 9.50 -38.28 -0.36 -5.91 16 22 C -0.10 -1.32 5.95 -28.12 -0.17 -1.48 16 23 C 0.11 1.35 6.49 -3.50 -0.02 1.33 16 24 H 0.09 0.64 7.57 -51.93 -0.39 0.24 16 25 H 0.09 0.72 8.12 -51.93 -0.42 0.29 16 26 H 0.09 0.51 8.13 -51.93 -0.42 0.09 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.09 0.72 6.24 -51.93 -0.32 0.40 16 29 H 0.12 1.71 7.94 -52.49 -0.42 1.29 16 30 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.13 2.31 8.06 -52.49 -0.42 1.89 16 32 H 0.28 7.33 8.72 -40.82 -0.36 6.97 16 33 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.09 1.15 7.98 -51.93 -0.41 0.74 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.19 7.07 -51.93 -0.37 0.83 16 LS Contribution 309.87 15.07 4.67 4.67 Total: -1.00 -31.18 309.87 -7.64 -38.82 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.89 Total: -1.86 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -3.36 Total: -13.34 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.19 Total: -43.25 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 28.31 SS G_CDS: -4.34 Total: 23.96 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.18 -7.64 -38.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241969821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.825 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds