Wall clock time and date at job start Mon Mar 30 2020 01:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21280 * 119.99964 * 2 1 4 4 N 1.34769 * 120.00098 * 179.97438 * 2 1 3 5 5 C 1.46993 * 121.33539 * 359.97438 * 4 2 1 6 6 C 1.50343 * 109.15713 * 223.26714 * 5 4 2 7 7 C 1.31117 * 123.43284 * 348.94349 * 6 5 4 8 8 C 1.47801 * 117.81285 * 180.81287 * 7 6 5 9 9 C 1.40236 * 120.83830 * 114.99853 * 8 7 6 10 10 C 1.38457 * 119.39776 * 180.02562 * 9 8 7 11 11 N 1.31491 * 121.16898 * 359.97438 * 10 9 8 12 12 C 1.33657 * 121.84613 * 0.02562 * 11 10 9 13 13 C 1.41431 * 119.77623 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00737 * 187.07694 * 13 12 11 15 15 C 1.40034 * 119.99610 * 7.07626 * 13 12 11 16 16 N 1.30742 * 120.00217 * 182.55914 * 15 13 12 17 17 Si 1.86807 * 120.00131 * 2.55643 * 15 13 12 18 18 H 1.48500 * 109.47061 * 179.97438 * 17 15 13 19 19 H 1.48503 * 109.46970 * 300.00431 * 17 15 13 20 20 H 1.48498 * 109.46749 * 59.99912 * 17 15 13 21 21 C 1.39515 * 120.84292 * 295.29656 * 8 7 6 22 22 C 1.49989 * 124.37828 * 1.09646 * 7 6 5 23 23 C 1.47307 * 121.33817 * 180.02562 * 4 2 1 24 24 H 1.09000 * 109.47308 * 239.99896 * 1 2 3 25 25 H 1.09005 * 109.47327 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47068 * 120.00043 * 1 2 3 27 27 H 1.09002 * 109.52010 * 103.36526 * 5 4 2 28 28 H 1.08999 * 109.52505 * 343.17546 * 5 4 2 29 29 H 1.08002 * 118.28267 * 168.95607 * 6 5 4 30 30 H 1.07995 * 120.30088 * 359.97438 * 9 8 7 31 31 H 1.07994 * 119.41432 * 179.97438 * 10 9 8 32 32 H 0.96999 * 119.99756 * 354.84727 * 16 15 13 33 33 H 1.08003 * 120.59557 * 359.97438 * 21 8 7 34 34 H 1.09000 * 109.31770 * 101.04136 * 22 7 6 35 35 H 1.09006 * 109.31610 * 220.46198 * 22 7 6 36 36 H 1.09003 * 109.76829 * 237.32387 * 23 4 2 37 37 H 1.09002 * 109.76722 * 358.09679 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4758 -2.4569 0.0017 6 6 2.1469 -3.3852 0.9754 7 6 3.3074 -3.1331 1.5313 8 6 3.8617 -4.1421 2.4582 9 6 5.0457 -4.8277 2.1501 10 6 5.5381 -5.7673 3.0399 11 7 4.9156 -6.0277 4.1685 12 6 3.7844 -5.4032 4.5103 13 6 3.1514 -5.7170 5.7355 14 1 2.1812 -5.3015 5.9641 15 6 3.7829 -6.5666 6.6522 16 7 3.1766 -6.8968 7.7625 17 14 5.4917 -7.2282 6.2889 18 1 5.9343 -8.0976 7.4085 19 1 5.4598 -8.0174 5.0313 20 1 6.4395 -6.0950 6.1381 21 6 3.2171 -4.4410 3.6588 22 6 4.1072 -1.8866 1.2941 23 6 3.6536 -1.2015 0.0011 24 1 -0.3634 -0.5138 0.8900 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 1.5091 -2.8911 -0.9976 28 1 0.4384 -2.3047 0.2993 29 1 1.6471 -4.3081 1.2303 30 1 5.5681 -4.6252 1.2269 31 1 6.4496 -6.2957 2.8028 32 1 2.3224 -6.4953 7.9865 33 1 2.3008 -3.9382 3.9308 34 1 3.9707 -1.2054 2.1339 35 1 5.1628 -2.1458 1.2117 36 1 4.0095 -1.7640 -0.8621 37 1 4.0460 -0.1852 -0.0330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241969821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:42 Heat of formation + Delta-G solvation = -27.665371 kcal Electronic energy + Delta-G solvation = -20091.113736 eV Core-core repulsion = 17024.637353 eV Total energy + Delta-G solvation = -3066.476383 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.25661 -40.46225 -38.50623 -35.92705 -35.05889 -32.77294 -32.31524 -31.67352 -30.17819 -27.49785 -26.61412 -24.63949 -23.67848 -22.76164 -21.24352 -20.31038 -18.58772 -18.17626 -17.23835 -17.07551 -16.77102 -16.52832 -16.13565 -15.74593 -15.17255 -14.87281 -14.73539 -14.49738 -14.43469 -14.18221 -14.07234 -13.76291 -13.41937 -13.08060 -12.92515 -12.64528 -12.63235 -12.55883 -12.02797 -11.80756 -11.60392 -11.32472 -10.96652 -10.50498 -9.90625 -9.83930 -9.66145 -9.59051 -9.23834 -6.84792 0.50036 0.67674 1.22454 1.57473 1.61090 1.72134 1.98790 2.06717 2.47342 2.64519 3.50150 3.53184 3.68791 3.94798 3.95739 4.01825 4.13427 4.30690 4.44642 4.52733 4.56718 4.57672 4.61041 4.64947 4.71945 4.73896 4.78385 4.96289 5.03966 5.17799 5.27403 5.36153 5.40068 5.47998 5.62557 5.74662 5.95200 6.00377 6.35864 6.40432 6.63995 7.10083 7.57344 7.94732 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032626 B = 0.004192 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.996729 B = 6678.105726 C = 7129.709162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.507 3.493 3 O -0.601 6.601 4 N -0.617 5.617 5 C 0.147 3.853 6 C -0.160 4.160 7 C -0.079 4.079 8 C 0.018 3.982 9 C -0.278 4.278 10 C 0.132 3.868 11 N -0.598 5.598 12 C 0.238 3.762 13 C -0.515 4.515 14 H 0.061 0.939 15 C 0.015 3.985 16 N -0.833 5.833 17 Si 1.191 2.809 18 H -0.332 1.332 19 H -0.276 1.276 20 H -0.297 1.297 21 C -0.264 4.264 22 C -0.086 4.086 23 C 0.115 3.885 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.118 0.882 27 H 0.110 0.890 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.144 0.856 31 H 0.164 0.836 32 H 0.279 0.721 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.469 7.765 -18.052 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.298 3.702 3 O -0.483 6.483 4 N -0.350 5.350 5 C 0.026 3.974 6 C -0.178 4.178 7 C -0.079 4.079 8 C 0.012 3.988 9 C -0.300 4.300 10 C -0.027 4.027 11 N -0.318 5.318 12 C 0.113 3.887 13 C -0.548 4.548 14 H 0.079 0.921 15 C -0.201 4.201 16 N -0.456 5.456 17 Si 1.024 2.976 18 H -0.266 1.266 19 H -0.203 1.203 20 H -0.225 1.225 21 C -0.286 4.286 22 C -0.124 4.124 23 C -0.007 4.007 24 H 0.122 0.878 25 H 0.109 0.891 26 H 0.137 0.863 27 H 0.128 0.872 28 H 0.140 0.860 29 H 0.134 0.866 30 H 0.162 0.838 31 H 0.181 0.819 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.854 6.743 -16.847 18.240 hybrid contribution -1.835 1.525 -0.221 2.396 sum -3.689 8.267 -17.068 19.320 Atomic orbital electron populations 1.21988 0.88230 1.06170 1.06302 1.21576 0.92379 0.82129 0.74105 1.90680 1.72144 1.32682 1.52792 1.48409 1.07339 1.06661 1.72594 1.20824 0.96825 0.80448 0.99337 1.22819 0.95170 1.00861 0.98988 1.19561 0.96311 0.94707 0.97336 1.19346 0.93662 0.93401 0.92399 1.21700 1.00076 1.04697 1.03488 1.22744 0.97525 0.93707 0.88688 1.66427 1.12797 1.31034 1.21517 1.18698 0.88636 0.88466 0.92852 1.20746 1.04794 1.27639 1.01593 0.92079 1.28562 1.08342 0.92054 0.91099 1.70676 1.16500 1.35064 1.23408 0.81322 0.68482 0.75635 0.72177 1.26614 1.20329 1.22529 1.21799 1.03677 1.05239 0.97902 1.20645 1.00282 0.93376 0.98098 1.21671 0.79930 1.01870 0.97254 0.87787 0.89137 0.86323 0.87185 0.85984 0.86573 0.83814 0.81868 0.91020 0.88104 0.92316 0.88807 0.88661 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 8.75 71.24 0.62 -1.46 16 2 C 0.51 11.35 7.83 87.66 0.69 12.04 16 3 O -0.60 -19.18 16.57 -3.03 -0.05 -19.23 16 4 N -0.62 -12.41 2.96 -823.09 -2.44 -14.84 16 5 C 0.15 2.19 6.49 85.43 0.55 2.75 16 6 C -0.16 -3.70 9.47 25.42 0.24 -3.46 16 7 C -0.08 -2.24 5.33 -17.71 -0.09 -2.34 16 8 C 0.02 0.68 5.10 -19.95 -0.10 0.58 16 9 C -0.28 -9.79 9.73 22.81 0.22 -9.56 16 10 C 0.13 5.26 11.16 84.80 0.95 6.21 16 11 N -0.60 -29.42 4.53 -189.41 -0.86 -30.28 16 12 C 0.24 12.37 6.39 40.19 0.26 12.63 16 13 C -0.52 -29.19 9.58 23.49 0.23 -28.97 16 14 H 0.06 3.54 8.05 -2.91 -0.02 3.52 16 15 C 0.02 0.86 5.52 85.29 0.47 1.34 16 16 N -0.83 -47.34 13.65 21.84 0.30 -47.05 16 17 Si 1.19 58.49 25.56 68.60 1.75 60.24 16 18 H -0.33 -16.01 7.11 99.48 0.71 -15.30 16 19 H -0.28 -13.17 6.67 99.48 0.66 -12.51 16 20 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 21 C -0.26 -12.00 9.50 23.12 0.22 -11.78 16 22 C -0.09 -2.17 5.95 29.69 0.18 -1.99 16 23 C 0.12 2.44 6.49 86.29 0.56 3.00 16 24 H 0.10 1.03 7.57 -2.39 -0.02 1.01 16 25 H 0.09 1.17 8.12 -2.38 -0.02 1.15 16 26 H 0.12 0.75 8.13 -2.38 -0.02 0.73 16 27 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.12 1.20 6.24 -2.39 -0.01 1.19 16 29 H 0.12 2.87 7.94 -2.91 -0.02 2.85 16 30 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 31 H 0.16 5.25 8.06 -2.91 -0.02 5.23 16 32 H 0.28 15.37 8.72 -92.71 -0.81 14.56 16 33 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.09 2.18 7.98 -2.38 -0.02 2.16 16 36 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.99 7.07 -2.39 -0.02 1.97 16 Total: -1.00 -71.24 309.87 4.68 -66.56 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 0.99 Total: 5.61 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: 4.99 Total: -21.01 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -3.00 Total: -92.17 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.05 Total: -19.23 kcal Atomic # 14 Polarization: 58.49 SS G_CDS: 1.75 Total: 60.24 kcal Total: -71.24 4.68 -66.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241969821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.894 kcal (2) G-P(sol) polarization free energy of solvation -71.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds