Wall clock time and date at job start Mon Mar 30 2020 01:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47133 * 2 1 4 4 N 1.46496 * 109.47445 * 120.00169 * 2 1 3 5 5 C 1.34867 * 125.89419 * 275.24722 * 4 2 1 6 6 C 1.36474 * 107.59823 * 180.13585 * 5 4 2 7 7 C 1.48420 * 126.22482 * 179.89790 * 6 5 4 8 8 C 1.39220 * 120.14799 * 309.70680 * 7 6 5 9 9 C 1.38055 * 119.94767 * 179.97438 * 8 7 6 10 10 C 1.38423 * 120.25809 * 0.02562 * 9 8 7 11 11 C 1.38135 * 120.31194 * 359.97438 * 10 9 8 12 12 C 1.38732 * 120.04563 * 359.97438 * 11 10 9 13 13 O 1.35697 * 120.13192 * 179.97438 * 12 11 10 14 14 C 1.34804 * 117.00134 * 354.40392 * 13 12 11 15 15 H 1.08006 * 119.99839 * 5.05812 * 14 13 12 16 16 C 1.38634 * 120.00387 * 185.05967 * 14 13 12 17 17 N 1.31569 * 120.00150 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00185 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.46772 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46680 * 120.00287 * 18 16 14 21 21 H 1.48497 * 109.47048 * 240.00015 * 18 16 14 22 22 C 1.40868 * 107.55044 * 359.63012 * 6 5 4 23 23 N 1.30672 * 108.09825 * 0.22715 * 22 6 5 24 24 H 1.09003 * 109.47192 * 59.99519 * 1 2 3 25 25 H 1.08998 * 109.47588 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46591 * 300.00058 * 1 2 3 27 27 H 1.08996 * 109.47169 * 240.00180 * 2 1 3 28 28 H 1.09002 * 109.46991 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47474 * 300.00308 * 3 2 1 30 30 H 1.09004 * 109.47430 * 60.00456 * 3 2 1 31 31 H 1.08002 * 126.19998 * 0.03020 * 5 4 2 32 32 H 1.08005 * 120.02894 * 0.26063 * 8 7 6 33 33 H 1.07997 * 119.87385 * 180.02562 * 9 8 7 34 34 H 1.08001 * 119.84390 * 179.97438 * 10 9 8 35 35 H 1.07996 * 119.98014 * 179.97438 * 11 10 9 36 36 H 0.96995 * 120.00446 * 179.97438 * 17 16 14 37 37 H 1.07998 * 125.95159 * 180.19286 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1878 -0.1378 2.4145 6 6 2.6596 -1.1108 3.2471 7 6 2.9913 -0.9500 4.6848 8 6 3.8127 0.0944 5.1003 9 6 4.1182 0.2404 6.4387 10 6 3.6112 -0.6485 7.3708 11 6 2.7953 -1.6887 6.9704 12 6 2.4792 -1.8468 5.6288 13 8 1.6782 -2.8683 5.2335 14 6 1.3163 -3.7621 6.1754 15 1 1.5946 -3.6023 7.2067 16 6 0.5870 -4.8864 5.8205 17 7 0.2484 -5.0813 4.5642 18 14 0.0862 -6.1254 7.1258 19 1 0.5867 -5.6784 8.4504 20 1 -1.3945 -6.2304 7.1662 21 1 0.6677 -7.4519 6.7982 22 6 2.7686 -2.2971 2.4952 23 7 2.3847 -2.0397 1.2730 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6768 1.9564 0.8900 31 1 1.9881 0.8892 2.6824 32 1 4.2069 0.7927 4.3767 33 1 4.7551 1.0513 6.7597 34 1 3.8548 -0.5283 8.4161 35 1 2.4030 -2.3794 7.7021 36 1 -0.2615 -5.8681 4.3157 37 1 3.1106 -3.2527 2.8645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242437981.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:18 Heat of formation + Delta-G solvation = 71.244627 kcal Electronic energy + Delta-G solvation = -20386.231777 eV Core-core repulsion = 17324.044454 eV Total energy + Delta-G solvation = -3062.187324 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.62535 -38.78017 -36.26951 -35.49658 -32.25320 -31.39030 -29.71603 -28.94029 -27.70834 -27.24630 -25.26949 -23.06033 -21.54442 -21.36115 -19.78283 -19.32297 -17.86701 -17.20623 -16.17095 -15.02858 -14.76956 -14.54848 -14.39544 -14.12953 -13.85621 -13.54765 -13.41283 -12.83344 -12.69248 -12.47843 -12.40013 -12.13404 -11.96123 -11.63679 -11.40983 -11.28401 -11.16669 -10.85940 -10.76187 -10.64674 -10.38759 -10.01008 -9.27319 -8.80775 -8.76420 -8.44057 -7.59093 -6.93138 -6.38533 -3.96736 2.05524 2.44228 2.58421 2.95085 3.15650 3.17171 3.22281 3.62330 4.00929 4.56757 4.67127 4.87332 5.03147 5.15097 5.24795 5.33019 5.38296 5.47331 5.59807 5.60895 5.71470 5.73368 5.82034 5.95079 6.04219 6.15117 6.27111 6.32351 6.36859 6.64670 6.78280 6.96880 7.16664 7.21934 7.42411 7.45583 7.47830 7.62851 7.89155 8.05481 8.38778 9.06500 9.78785 10.78321 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015455 B = 0.006315 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.237356 B = 4432.633771 C = 5924.654205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.160 3.840 3 C -0.163 4.163 4 N -0.377 5.377 5 C 0.047 3.953 6 C -0.160 4.160 7 C -0.086 4.086 8 C -0.069 4.069 9 C -0.214 4.214 10 C -0.077 4.077 11 C -0.234 4.234 12 C 0.161 3.839 13 O -0.165 6.165 14 C -0.393 4.393 15 H 0.091 0.909 16 C 0.041 3.959 17 N -0.856 5.856 18 Si 0.937 3.063 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.276 1.276 22 C 0.091 3.909 23 N -0.307 5.307 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.164 0.836 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.126 0.874 36 H 0.268 0.732 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.079 10.957 -4.882 12.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.057 3.943 3 C -0.221 4.221 4 N -0.160 5.160 5 C -0.098 4.098 6 C -0.171 4.171 7 C -0.088 4.088 8 C -0.088 4.088 9 C -0.233 4.233 10 C -0.095 4.095 11 C -0.253 4.253 12 C 0.106 3.894 13 O -0.068 6.068 14 C -0.469 4.469 15 H 0.108 0.892 16 C -0.164 4.164 17 N -0.491 5.491 18 Si 0.762 3.238 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.202 1.202 22 C -0.095 4.095 23 N -0.127 5.127 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.181 0.819 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.144 0.856 36 H 0.078 0.922 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.601 10.300 -6.560 12.486 hybrid contribution -0.262 -0.316 1.708 1.757 sum 2.339 9.984 -4.852 11.344 Atomic orbital electron populations 1.22248 0.94116 1.03476 1.02528 1.21072 0.94557 0.92369 0.86264 1.22180 1.02165 0.94497 1.03249 1.48485 1.52052 1.07616 1.07852 1.22229 1.02615 0.99261 0.85722 1.18661 1.11570 0.93183 0.93719 1.17193 1.03809 0.98514 0.89293 1.20664 0.96642 0.96201 0.95284 1.20494 1.07066 1.02465 0.93279 1.20760 0.96294 0.94287 0.98176 1.21098 1.05997 1.02296 0.95953 1.19353 0.89259 0.89224 0.91530 1.84002 1.54879 1.30832 1.37053 1.21362 1.35236 1.00931 0.89378 0.89191 1.25239 0.96628 0.97228 0.97264 1.70068 1.35541 1.27514 1.15945 0.85705 0.78511 0.79845 0.79711 1.19166 1.20312 1.20205 1.23940 0.96947 0.98983 0.89655 1.77172 1.21679 0.92524 1.21334 0.91059 0.91461 0.91929 0.88505 0.91618 0.90459 0.91576 0.81889 0.87279 0.87762 0.87703 0.85583 0.92210 0.80173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 9.52 37.16 0.35 -1.59 16 2 C 0.16 2.00 3.92 -67.93 -0.27 1.73 16 3 C -0.16 -1.50 8.84 37.16 0.33 -1.17 16 4 N -0.38 -6.52 3.52 -54.59 -0.19 -6.71 16 5 C 0.05 0.82 10.46 -16.85 -0.18 0.65 16 6 C -0.16 -3.35 5.32 -105.34 -0.56 -3.91 16 7 C -0.09 -1.83 5.77 -104.71 -0.60 -2.44 16 8 C -0.07 -1.26 9.70 -39.28 -0.38 -1.64 16 9 C -0.21 -3.73 10.03 -39.58 -0.40 -4.12 16 10 C -0.08 -1.42 10.03 -39.55 -0.40 -1.82 16 11 C -0.23 -5.11 9.16 -39.44 -0.36 -5.48 16 12 C 0.16 3.89 6.63 -38.77 -0.26 3.63 16 13 O -0.17 -4.62 8.66 0.29 0.00 -4.61 16 14 C -0.39 -10.87 9.49 30.88 0.29 -10.58 16 15 H 0.09 2.33 5.21 -52.48 -0.27 2.05 16 16 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 17 N -0.86 -25.03 13.67 55.48 0.76 -24.28 16 18 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 C 0.09 2.03 11.30 -17.05 -0.19 1.84 16 23 N -0.31 -6.44 12.54 30.81 0.39 -6.06 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.59 7.15 -51.93 -0.37 0.22 16 31 H 0.16 2.33 7.26 -52.49 -0.38 1.95 16 32 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 33 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.13 2.75 5.64 -52.49 -0.30 2.46 16 36 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.18 4.15 8.06 -52.49 -0.42 3.72 16 LS Contribution 319.55 15.07 4.82 4.82 Total: -1.00 -31.93 319.55 -6.65 -38.58 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -4.68 Total: 6.53 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: -2.71 Total: -23.87 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.95 Total: -37.04 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: 0.00 Total: -4.61 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.93 -6.65 -38.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242437981.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.823 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds