Wall clock time and date at job start Mon Mar 30 2020 01:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47133 * 2 1 4 4 N 1.46496 * 109.47445 * 120.00169 * 2 1 3 5 5 C 1.34867 * 125.89419 * 275.24722 * 4 2 1 6 6 C 1.36474 * 107.59823 * 180.13585 * 5 4 2 7 7 C 1.48420 * 126.22482 * 179.89790 * 6 5 4 8 8 C 1.39220 * 120.14799 * 309.70680 * 7 6 5 9 9 C 1.38055 * 119.94767 * 179.97438 * 8 7 6 10 10 C 1.38423 * 120.25809 * 0.02562 * 9 8 7 11 11 C 1.38135 * 120.31194 * 359.97438 * 10 9 8 12 12 C 1.38732 * 120.04563 * 359.97438 * 11 10 9 13 13 O 1.35697 * 120.13192 * 179.97438 * 12 11 10 14 14 C 1.34804 * 117.00134 * 354.40392 * 13 12 11 15 15 H 1.08006 * 119.99839 * 5.05812 * 14 13 12 16 16 C 1.38634 * 120.00387 * 185.05967 * 14 13 12 17 17 N 1.31569 * 120.00150 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00185 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.46772 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46680 * 120.00287 * 18 16 14 21 21 H 1.48497 * 109.47048 * 240.00015 * 18 16 14 22 22 C 1.40868 * 107.55044 * 359.63012 * 6 5 4 23 23 N 1.30672 * 108.09825 * 0.22715 * 22 6 5 24 24 H 1.09003 * 109.47192 * 59.99519 * 1 2 3 25 25 H 1.08998 * 109.47588 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46591 * 300.00058 * 1 2 3 27 27 H 1.08996 * 109.47169 * 240.00180 * 2 1 3 28 28 H 1.09002 * 109.46991 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47474 * 300.00308 * 3 2 1 30 30 H 1.09004 * 109.47430 * 60.00456 * 3 2 1 31 31 H 1.08002 * 126.19998 * 0.03020 * 5 4 2 32 32 H 1.08005 * 120.02894 * 0.26063 * 8 7 6 33 33 H 1.07997 * 119.87385 * 180.02562 * 9 8 7 34 34 H 1.08001 * 119.84390 * 179.97438 * 10 9 8 35 35 H 1.07996 * 119.98014 * 179.97438 * 11 10 9 36 36 H 0.96995 * 120.00446 * 179.97438 * 17 16 14 37 37 H 1.07998 * 125.95159 * 180.19286 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1878 -0.1378 2.4145 6 6 2.6596 -1.1108 3.2471 7 6 2.9913 -0.9500 4.6848 8 6 3.8127 0.0944 5.1003 9 6 4.1182 0.2404 6.4387 10 6 3.6112 -0.6485 7.3708 11 6 2.7953 -1.6887 6.9704 12 6 2.4792 -1.8468 5.6288 13 8 1.6782 -2.8683 5.2335 14 6 1.3163 -3.7621 6.1754 15 1 1.5946 -3.6023 7.2067 16 6 0.5870 -4.8864 5.8205 17 7 0.2484 -5.0813 4.5642 18 14 0.0862 -6.1254 7.1258 19 1 0.5867 -5.6784 8.4504 20 1 -1.3945 -6.2304 7.1662 21 1 0.6677 -7.4519 6.7982 22 6 2.7686 -2.2971 2.4952 23 7 2.3847 -2.0397 1.2730 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6768 1.9564 0.8900 31 1 1.9881 0.8892 2.6824 32 1 4.2069 0.7927 4.3767 33 1 4.7551 1.0513 6.7597 34 1 3.8548 -0.5283 8.4161 35 1 2.4030 -2.3794 7.7021 36 1 -0.2615 -5.8681 4.3157 37 1 3.1106 -3.2527 2.8645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242437981.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:17 Heat of formation + Delta-G solvation = 51.891368 kcal Electronic energy + Delta-G solvation = -20387.070998 eV Core-core repulsion = 17324.044454 eV Total energy + Delta-G solvation = -3063.026544 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.11290 -40.47881 -37.97088 -36.62190 -34.23145 -32.94208 -31.12089 -30.55082 -29.14628 -28.17010 -27.24465 -24.41274 -23.11152 -22.95197 -21.29448 -20.66367 -19.70370 -18.83332 -17.67998 -16.40585 -16.33371 -16.09794 -15.95171 -15.57459 -15.39158 -15.08034 -14.93705 -14.34607 -14.14754 -13.82170 -13.65121 -13.47718 -13.16222 -13.05922 -12.95137 -12.53629 -12.42890 -12.32492 -12.22166 -12.09020 -12.03966 -11.56742 -11.07686 -10.76702 -10.27346 -9.97608 -9.17602 -8.58629 -8.39903 -6.06114 0.51980 0.84315 1.06508 1.35076 1.43508 1.52620 1.67562 1.98997 2.19943 2.92401 3.27423 3.56809 3.62498 3.94497 3.99532 4.04899 4.11792 4.28593 4.32056 4.42586 4.57930 4.65419 4.74279 4.77565 4.82490 4.85641 4.94006 5.04566 5.17779 5.19693 5.22999 5.26547 5.40478 5.62283 5.80331 5.84421 5.88249 6.09554 6.29139 6.34477 6.82817 7.04479 7.90528 8.81798 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015455 B = 0.006315 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.237356 B = 4432.633771 C = 5924.654205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 C -0.154 4.154 4 N -0.365 5.365 5 C 0.070 3.930 6 C -0.193 4.193 7 C -0.093 4.093 8 C -0.066 4.066 9 C -0.188 4.188 10 C -0.077 4.077 11 C -0.248 4.248 12 C 0.117 3.883 13 O -0.214 6.214 14 C -0.410 4.410 15 H 0.098 0.902 16 C -0.021 4.021 17 N -0.915 5.915 18 Si 1.013 2.987 19 H -0.252 1.252 20 H -0.272 1.272 21 H -0.271 1.271 22 C 0.064 3.936 23 N -0.335 5.335 24 H 0.110 0.890 25 H 0.034 0.966 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.206 0.794 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.141 0.859 35 H 0.115 0.885 36 H 0.268 0.732 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.062 14.728 -4.270 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.044 3.956 3 C -0.212 4.212 4 N -0.147 5.147 5 C -0.077 4.077 6 C -0.205 4.205 7 C -0.095 4.095 8 C -0.084 4.084 9 C -0.206 4.206 10 C -0.096 4.096 11 C -0.268 4.268 12 C 0.066 3.934 13 O -0.120 6.120 14 C -0.486 4.486 15 H 0.115 0.885 16 C -0.218 4.218 17 N -0.553 5.553 18 Si 0.833 3.167 19 H -0.175 1.175 20 H -0.197 1.197 21 H -0.197 1.197 22 C -0.121 4.121 23 N -0.156 5.156 24 H 0.129 0.871 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.128 0.872 30 H 0.092 0.908 31 H 0.223 0.777 32 H 0.164 0.836 33 H 0.169 0.831 34 H 0.159 0.841 35 H 0.133 0.867 36 H 0.077 0.923 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.620 14.115 -5.942 15.736 hybrid contribution -0.406 -1.159 1.440 1.893 sum 3.214 12.956 -4.501 14.087 Atomic orbital electron populations 1.22237 0.93371 1.01925 1.04354 1.21650 0.95163 0.94278 0.84467 1.22176 1.02053 0.91635 1.05290 1.48982 1.50079 1.06326 1.09361 1.22720 0.99951 1.00180 0.84895 1.18840 1.13928 0.93529 0.94182 1.17575 1.03926 0.98776 0.89246 1.21112 0.95060 0.95442 0.96762 1.21089 1.05010 1.02115 0.92436 1.21173 0.94887 0.92982 1.00508 1.21230 1.07095 1.03569 0.94881 1.19980 0.90448 0.89542 0.93409 1.83988 1.57682 1.32546 1.37746 1.21812 1.35297 1.01549 0.89952 0.88485 1.26451 0.96575 0.99156 0.99662 1.70236 1.37885 1.28649 1.18516 0.84605 0.78163 0.76796 0.77133 1.17489 1.19704 1.19654 1.23649 0.98787 0.98853 0.90857 1.77060 1.22513 0.95132 1.20883 0.87122 0.94695 0.92176 0.88193 0.91746 0.87198 0.90755 0.77687 0.83612 0.83097 0.84118 0.86744 0.92348 0.83224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 9.52 71.98 0.69 -2.81 16 2 C 0.14 3.33 3.92 44.99 0.18 3.50 16 3 C -0.15 -2.19 8.84 71.98 0.64 -1.56 16 4 N -0.36 -12.44 3.52 -326.61 -1.15 -13.59 16 5 C 0.07 2.35 10.46 83.81 0.88 3.23 16 6 C -0.19 -8.27 5.32 -20.33 -0.11 -8.38 16 7 C -0.09 -3.99 5.77 -19.92 -0.11 -4.10 16 8 C -0.07 -2.17 9.70 22.46 0.22 -1.95 16 9 C -0.19 -5.64 10.03 22.27 0.22 -5.42 16 10 C -0.08 -2.64 10.03 22.29 0.22 -2.41 16 11 C -0.25 -10.95 9.16 22.36 0.20 -10.74 16 12 C 0.12 5.90 6.63 22.79 0.15 6.05 16 13 O -0.21 -12.87 8.66 -21.89 -0.19 -13.06 16 14 C -0.41 -24.16 9.49 67.91 0.64 -23.51 16 15 H 0.10 5.30 5.21 -2.91 -0.02 5.29 16 16 C -0.02 -1.21 5.49 84.83 0.47 -0.74 16 17 N -0.91 -57.47 13.67 21.61 0.30 -57.18 16 18 Si 1.01 44.20 29.55 68.60 2.03 46.23 16 19 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 C 0.06 3.05 11.30 85.51 0.97 4.02 16 23 N -0.33 -14.74 12.54 -56.44 -0.71 -15.45 16 24 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.03 0.97 8.14 -2.39 -0.02 0.96 16 26 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.97 7.15 -2.38 -0.02 0.95 16 31 H 0.21 5.03 7.26 -2.91 -0.02 5.01 16 32 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 33 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 34 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 35 H 0.11 5.17 5.64 -2.91 -0.02 5.16 16 36 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.15 7.84 8.06 -2.91 -0.02 7.82 16 Total: -1.00 -77.78 319.55 6.60 -71.19 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 1.07 Total: 26.68 kcal Atomic # 6 Polarization: -50.08 SS G_CDS: 5.25 Total: -44.83 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -1.56 Total: -86.21 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.19 Total: -13.06 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -77.78 6.60 -71.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242437981.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.078 kcal (2) G-P(sol) polarization free energy of solvation -77.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds