Wall clock time and date at job start Mon Mar 30 2020 01:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47215 * 2 1 4 4 N 1.46495 * 109.47512 * 120.00302 * 2 1 3 5 5 C 1.35052 * 125.92713 * 275.00291 * 4 2 1 6 6 C 1.35065 * 107.98998 * 179.73534 * 5 4 2 7 7 C 1.40882 * 107.85001 * 0.22415 * 6 5 4 8 8 C 1.48332 * 126.04586 * 180.02562 * 7 6 5 9 9 C 1.39263 * 120.15705 * 359.72781 * 8 7 6 10 10 C 1.38028 * 119.94279 * 179.67560 * 9 8 7 11 11 C 1.38429 * 120.26890 * 0.62052 * 10 9 8 12 12 C 1.38119 * 120.32047 * 359.67808 * 11 10 9 13 13 C 1.38749 * 120.04684 * 359.97438 * 12 11 10 14 14 O 1.35678 * 120.13604 * 179.97438 * 13 12 11 15 15 C 1.34815 * 116.99670 * 354.40509 * 14 13 12 16 16 H 1.08006 * 119.99819 * 5.05571 * 15 14 13 17 17 C 1.38646 * 119.99819 * 185.06389 * 15 14 13 18 18 N 1.31554 * 120.00199 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99877 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47088 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.46909 * 119.99585 * 19 17 15 22 22 H 1.48494 * 109.47111 * 239.99747 * 19 17 15 23 23 N 1.31666 * 107.91242 * 0.02562 * 7 6 5 24 24 H 1.08998 * 109.46840 * 300.00002 * 1 2 3 25 25 H 1.08996 * 109.47021 * 59.99476 * 1 2 3 26 26 H 1.08996 * 109.47155 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47016 * 240.00530 * 2 1 3 28 28 H 1.08998 * 109.47300 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47111 * 300.00551 * 3 2 1 30 30 H 1.09002 * 109.46841 * 59.99911 * 3 2 1 31 31 H 1.08001 * 126.00087 * 359.97438 * 5 4 2 32 32 H 1.08000 * 126.07824 * 180.24722 * 6 5 4 33 33 H 1.08000 * 120.02525 * 359.97438 * 9 8 7 34 34 H 1.08008 * 119.86061 * 180.32028 * 10 9 8 35 35 H 1.08003 * 119.84090 * 179.69690 * 11 10 9 36 36 H 1.07995 * 119.97791 * 180.02562 * 12 11 10 37 37 H 0.97003 * 120.00218 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0185 -0.6906 1.1961 5 6 2.1927 -0.1367 2.4153 6 6 2.6498 -1.0967 3.2482 7 6 2.7662 -2.2902 2.5089 8 6 3.2323 -3.5982 3.0306 9 6 3.6098 -3.7248 4.3652 10 6 4.0364 -4.9456 4.8476 11 6 4.1032 -6.0434 4.0070 12 6 3.7374 -5.9288 2.6801 13 6 3.2998 -4.7096 2.1829 14 8 2.9405 -4.5949 0.8796 15 6 3.1409 -5.6710 0.0925 16 1 3.4932 -6.5968 0.5230 17 6 2.8950 -5.5891 -1.2695 18 7 2.4656 -4.4615 -1.7938 19 14 3.1734 -7.0799 -2.3602 20 1 3.6549 -8.2153 -1.5330 21 1 1.8976 -7.4546 -3.0213 22 1 4.1894 -6.7547 -3.3931 23 7 2.3882 -2.0395 1.2729 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.9970 0.8922 2.6790 32 1 2.8840 -0.9717 4.2951 33 1 3.5641 -2.8696 5.0231 34 1 4.3239 -5.0435 5.8841 35 1 4.4427 -6.9942 4.3907 36 1 3.7913 -6.7890 2.0293 37 1 2.2932 -4.4043 -2.7466 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242454305.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:20 Heat of formation + Delta-G solvation = 55.268046 kcal Electronic energy + Delta-G solvation = -20535.317040 eV Core-core repulsion = 17472.436920 eV Total energy + Delta-G solvation = -3062.880120 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.96530 -40.50641 -38.01819 -36.58379 -34.24770 -32.73706 -31.03562 -30.36677 -29.57125 -28.19619 -27.29164 -24.42576 -23.66205 -22.60759 -20.91550 -20.52811 -19.72467 -18.62159 -17.84555 -16.59977 -16.21068 -16.14157 -15.99492 -15.48906 -15.28837 -15.11678 -14.72821 -14.34420 -14.16148 -13.79299 -13.56502 -13.48655 -13.14160 -13.09606 -12.98672 -12.57356 -12.34242 -12.32370 -12.23876 -12.12091 -11.99914 -11.28488 -10.94625 -10.79019 -10.66280 -9.55597 -9.24695 -8.67583 -8.38124 -6.05305 0.31168 0.80952 1.31578 1.32041 1.40963 1.49446 1.79951 2.17767 2.19780 2.94536 3.33554 3.57502 3.62126 3.88894 3.97238 4.00702 4.13422 4.22578 4.31638 4.51463 4.62305 4.63168 4.68214 4.77313 4.84149 4.90228 4.96836 5.07162 5.12861 5.17672 5.21184 5.25480 5.32935 5.62688 5.75415 5.80363 5.93058 6.06803 6.29264 6.43727 7.02559 7.12020 7.90428 8.81726 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012315 B = 0.007964 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.063295 B = 3515.170762 C = 5615.293230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.143 3.857 3 C -0.146 4.146 4 N -0.378 5.378 5 C 0.053 3.947 6 C -0.279 4.279 7 C 0.086 3.914 8 C -0.122 4.122 9 C -0.046 4.046 10 C -0.194 4.194 11 C -0.064 4.064 12 C -0.256 4.256 13 C 0.121 3.879 14 O -0.189 6.189 15 C -0.422 4.422 16 H 0.096 0.904 17 C -0.018 4.018 18 N -0.898 5.898 19 Si 1.013 2.987 20 H -0.253 1.253 21 H -0.269 1.269 22 H -0.270 1.270 23 N -0.302 5.302 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.024 0.976 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.216 0.784 32 H 0.173 0.827 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.147 0.853 36 H 0.116 0.884 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.592 9.635 8.846 13.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.042 3.958 3 C -0.204 4.204 4 N -0.162 5.162 5 C -0.092 4.092 6 C -0.308 4.308 7 C -0.077 4.077 8 C -0.126 4.126 9 C -0.066 4.066 10 C -0.212 4.212 11 C -0.082 4.082 12 C -0.275 4.275 13 C 0.067 3.933 14 O -0.093 6.093 15 C -0.498 4.498 16 H 0.113 0.887 17 C -0.217 4.217 18 N -0.534 5.534 19 Si 0.833 3.167 20 H -0.176 1.176 21 H -0.195 1.195 22 H -0.195 1.195 23 N -0.125 5.125 24 H 0.097 0.903 25 H 0.119 0.881 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.232 0.768 32 H 0.191 0.809 33 H 0.172 0.828 34 H 0.177 0.823 35 H 0.165 0.835 36 H 0.134 0.866 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.002 9.546 7.169 11.980 hybrid contribution 0.154 -0.738 -0.324 0.821 sum -0.848 8.807 6.845 11.187 Atomic orbital electron populations 1.22124 0.92747 1.01379 1.04575 1.21446 0.95656 0.94008 0.84687 1.22118 1.01459 0.91265 1.05569 1.49307 1.50244 1.06922 1.09718 1.22985 1.00440 1.01081 0.84677 1.21702 1.15787 0.90988 1.02349 1.21086 1.00052 0.94829 0.91771 1.17591 1.11617 0.88655 0.94691 1.21102 0.94964 0.99118 0.91419 1.21114 1.06938 0.92078 1.01117 1.21270 0.95532 0.99975 0.91471 1.21241 1.10931 0.96995 0.98381 1.20107 0.92915 0.94357 0.85913 1.84148 1.71441 1.38517 1.15156 1.21899 1.47207 0.90841 0.89896 0.88687 1.26491 0.96177 1.01703 0.97340 1.70313 1.43140 1.27304 1.12662 0.84611 0.78406 0.76200 0.77450 1.17648 1.19452 1.19523 1.78383 1.20559 0.93660 1.19854 0.90251 0.88055 0.95663 0.91782 0.92732 0.87854 0.89133 0.76759 0.80939 0.82781 0.82334 0.83522 0.86573 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.52 71.98 0.69 -3.41 16 2 C 0.14 4.56 3.93 44.99 0.18 4.73 16 3 C -0.15 -2.92 8.83 71.98 0.64 -2.28 16 4 N -0.38 -14.85 3.53 -327.60 -1.15 -16.01 16 5 C 0.05 1.63 10.57 83.47 0.88 2.51 16 6 C -0.28 -9.73 10.18 22.19 0.23 -9.51 16 7 C 0.09 4.08 6.97 42.50 0.30 4.38 16 8 C -0.12 -5.79 5.89 -19.93 -0.12 -5.91 16 9 C -0.05 -1.65 9.57 22.47 0.22 -1.44 16 10 C -0.19 -6.11 10.03 22.27 0.22 -5.89 16 11 C -0.06 -2.27 10.03 22.29 0.22 -2.05 16 12 C -0.26 -11.94 9.16 22.36 0.20 -11.74 16 13 C 0.12 6.56 6.65 22.81 0.15 6.72 16 14 O -0.19 -12.11 8.07 -21.79 -0.18 -12.28 16 15 C -0.42 -26.07 9.49 67.92 0.64 -25.43 16 16 H 0.10 5.44 5.21 -2.91 -0.02 5.43 16 17 C -0.02 -1.08 5.49 84.83 0.47 -0.61 16 18 N -0.90 -57.31 13.67 21.61 0.30 -57.01 16 19 Si 1.01 45.26 29.55 68.60 2.03 47.29 16 20 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 N -0.30 -15.95 11.07 -48.18 -0.53 -16.48 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.09 1.31 7.14 -2.39 -0.02 1.29 16 31 H 0.22 3.96 7.24 -2.91 -0.02 3.93 16 32 H 0.17 4.54 7.34 -2.91 -0.02 4.52 16 33 H 0.15 4.20 7.04 -2.91 -0.02 4.18 16 34 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 36 H 0.12 5.51 5.64 -2.91 -0.02 5.50 16 37 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -85.31 316.41 6.45 -78.87 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 1.08 Total: 25.56 kcal Atomic # 6 Polarization: -54.84 SS G_CDS: 4.91 Total: -49.93 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -1.39 Total: -89.51 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.18 Total: -12.28 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -85.31 6.45 -78.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242454305.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.134 kcal (2) G-P(sol) polarization free energy of solvation -85.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds