Wall clock time and date at job start Mon Mar 30 2020 01:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47237 * 2 1 4 4 N 1.46500 * 109.46840 * 120.00119 * 2 1 3 5 5 N 1.40067 * 126.14426 * 298.81582 * 4 2 1 6 6 C 1.30909 * 108.52662 * 179.97438 * 5 4 2 7 7 C 1.39475 * 108.60942 * 0.02562 * 6 5 4 8 8 C 1.36335 * 126.13621 * 118.51267 * 4 2 1 9 9 C 1.47843 * 126.35156 * 0.02562 * 8 4 2 10 10 C 1.39461 * 120.18041 * 311.08189 * 9 8 4 11 11 C 1.37955 * 119.92902 * 179.97438 * 10 9 8 12 12 C 1.38474 * 120.29294 * 359.97438 * 11 10 9 13 13 C 1.38119 * 120.35927 * 0.02562 * 12 11 10 14 14 C 1.38730 * 120.06737 * 359.70366 * 13 12 11 15 15 O 1.35642 * 120.14879 * 180.27691 * 14 13 12 16 16 C 1.34813 * 117.00139 * 6.10256 * 15 14 13 17 17 H 1.08000 * 119.99473 * 5.36498 * 16 15 14 18 18 C 1.38635 * 120.00269 * 185.36987 * 16 15 14 19 19 N 1.31567 * 119.99649 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00057 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47021 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47012 * 120.00012 * 20 18 16 23 23 H 1.48494 * 109.47170 * 239.99881 * 20 18 16 24 24 H 1.08994 * 109.47338 * 59.99531 * 1 2 3 25 25 H 1.09007 * 109.46993 * 299.99940 * 1 2 3 26 26 H 1.08997 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46786 * 240.00005 * 2 1 3 28 28 H 1.09001 * 109.47174 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47340 * 300.00468 * 3 2 1 30 30 H 1.09007 * 109.47081 * 60.00113 * 3 2 1 31 31 H 1.08003 * 125.69017 * 180.02562 * 6 5 4 32 32 H 1.07996 * 126.07447 * 180.02562 * 7 6 5 33 33 H 1.08005 * 120.03380 * 359.97438 * 10 9 8 34 34 H 1.08005 * 119.85660 * 179.97438 * 11 10 9 35 35 H 1.08001 * 119.82392 * 180.02562 * 12 11 10 36 36 H 1.08006 * 119.96468 * 179.97438 * 13 12 11 37 37 H 0.97002 * 119.99480 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7796 -0.3127 2.5236 6 6 2.3750 -1.1700 3.3137 7 6 3.0170 -2.1274 2.5284 8 6 2.7818 -1.8200 1.2171 9 6 3.2685 -2.5707 0.0402 10 6 2.3875 -2.9167 -0.9841 11 6 2.8474 -3.6168 -2.0803 12 6 4.1813 -3.9778 -2.1692 13 6 5.0642 -3.6413 -1.1617 14 6 4.6190 -2.9326 -0.0554 15 8 5.4858 -2.5964 0.9323 16 6 6.7892 -2.8687 0.7216 17 1 7.1127 -3.2537 -0.2341 18 6 7.7142 -2.6545 1.7318 19 7 7.3200 -2.1851 2.8960 20 14 9.5202 -3.0325 1.4401 21 1 9.7016 -3.5453 0.0583 22 1 10.3200 -1.7937 1.6168 23 1 9.9747 -4.0581 2.4129 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.3700 -1.1408 4.3933 32 1 3.5930 -2.9656 2.8917 33 1 1.3464 -2.6369 -0.9192 34 1 2.1640 -3.8845 -2.8726 35 1 4.5332 -4.5255 -3.0309 36 1 6.1031 -3.9265 -1.2375 37 1 7.9673 -2.0350 3.6027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242557274.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:24 Heat of formation + Delta-G solvation = 69.020307 kcal Electronic energy + Delta-G solvation = -20841.467436 eV Core-core repulsion = 17779.183659 eV Total energy + Delta-G solvation = -3062.283777 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.52354 -38.87285 -36.45460 -35.24896 -32.41513 -31.66207 -29.30297 -29.18597 -27.74655 -27.16058 -25.43067 -22.86915 -22.01245 -21.56120 -19.80080 -18.97236 -18.06085 -17.18750 -16.20440 -14.83278 -14.79634 -14.53709 -14.33801 -14.16631 -13.82968 -13.65952 -13.44342 -12.89316 -12.72424 -12.59892 -12.15709 -12.11142 -11.85235 -11.72661 -11.39700 -11.19834 -11.04427 -10.97682 -10.81858 -10.79374 -10.47965 -9.94725 -9.48984 -8.94944 -8.84338 -8.22324 -7.71221 -7.17916 -6.51066 -4.09901 1.73972 2.25454 2.68093 3.08570 3.09081 3.09974 3.15532 3.65839 3.90240 4.46819 4.77576 5.02821 5.09097 5.10623 5.16950 5.26504 5.48317 5.51682 5.60893 5.70003 5.82134 5.82770 5.89837 5.97955 6.05427 6.21214 6.29710 6.43312 6.48349 6.56630 6.74963 6.85559 7.02214 7.08135 7.24734 7.27732 7.43503 7.66506 7.73337 7.92017 8.41490 8.92684 9.60738 10.64905 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.006673 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.528923 B = 4194.815779 C = 5157.507911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.156 3.844 3 C -0.158 4.158 4 N -0.369 5.369 5 N -0.310 5.310 6 C 0.041 3.959 7 C -0.235 4.235 8 C 0.152 3.848 9 C -0.125 4.125 10 C -0.059 4.059 11 C -0.217 4.217 12 C -0.063 4.063 13 C -0.232 4.232 14 C 0.175 3.825 15 O -0.154 6.154 16 C -0.397 4.397 17 H 0.093 0.907 18 C 0.044 3.956 19 N -0.848 5.848 20 Si 0.940 3.060 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.275 1.275 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.175 0.825 32 H 0.145 0.855 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.131 0.869 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.369 1.123 -6.423 10.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 C -0.216 4.216 4 N -0.154 5.154 5 N -0.132 5.132 6 C -0.143 4.143 7 C -0.264 4.264 8 C 0.027 3.973 9 C -0.128 4.128 10 C -0.078 4.078 11 C -0.236 4.236 12 C -0.082 4.082 13 C -0.251 4.251 14 C 0.118 3.882 15 O -0.055 6.055 16 C -0.473 4.473 17 H 0.110 0.890 18 C -0.163 4.163 19 N -0.481 5.481 20 Si 0.764 3.236 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.200 1.200 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.192 0.808 32 H 0.163 0.837 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.044 2.450 -6.098 11.180 hybrid contribution 1.576 -1.014 -0.107 1.877 sum -7.469 1.435 -6.205 9.815 Atomic orbital electron populations 1.22129 0.94084 1.02552 1.02830 1.21197 0.94685 0.93836 0.84931 1.22094 1.02176 0.94768 1.02593 1.48937 1.41458 1.20274 1.04767 1.77062 1.25742 1.23762 0.86590 1.23547 0.97522 0.93664 0.99580 1.21376 1.09066 1.05109 0.90845 1.19367 0.94817 0.88512 0.94582 1.17071 0.91482 1.08696 0.95557 1.20715 0.97425 0.97021 0.92638 1.20479 0.95900 1.07446 0.99750 1.20860 0.93201 0.97013 0.97113 1.21131 1.01141 1.06520 0.96322 1.19233 0.88997 0.91232 0.88774 1.84037 1.17021 1.68707 1.35744 1.21407 0.79347 1.46010 1.00538 0.88979 1.25297 1.00146 0.96325 0.94484 1.70073 1.35169 1.39708 1.03123 0.85668 0.80605 0.78471 0.78831 1.19066 1.20118 1.20029 0.91214 0.91349 0.92326 0.88130 0.91937 0.91313 0.91392 0.80846 0.83715 0.87168 0.87282 0.87215 0.85108 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.47 37.16 0.35 -1.60 16 2 C 0.16 2.38 3.32 -67.93 -0.23 2.15 16 3 C -0.16 -2.24 9.44 37.16 0.35 -1.89 16 4 N -0.37 -7.11 3.32 -50.97 -0.17 -7.28 16 5 N -0.31 -6.15 12.42 30.55 0.38 -5.78 16 6 C 0.04 0.81 11.98 -17.48 -0.21 0.60 16 7 C -0.24 -5.18 9.97 -39.67 -0.40 -5.58 16 8 C 0.15 3.27 6.18 -82.48 -0.51 2.76 16 9 C -0.12 -2.64 5.43 -104.80 -0.57 -3.20 16 10 C -0.06 -1.04 8.21 -39.23 -0.32 -1.36 16 11 C -0.22 -3.55 10.03 -39.60 -0.40 -3.95 16 12 C -0.06 -1.10 10.03 -39.54 -0.40 -1.49 16 13 C -0.23 -4.82 9.12 -39.44 -0.36 -5.18 16 14 C 0.17 4.10 6.63 -38.69 -0.26 3.85 16 15 O -0.15 -4.22 8.61 0.43 0.00 -4.22 16 16 C -0.40 -10.70 9.44 30.88 0.29 -10.40 16 17 H 0.09 2.29 5.30 -52.49 -0.28 2.02 16 18 C 0.04 1.16 5.49 -17.52 -0.10 1.06 16 19 N -0.85 -24.11 13.67 55.48 0.76 -23.35 16 20 Si 0.94 19.97 29.55 -169.99 -5.02 14.95 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.10 1.52 5.99 -51.93 -0.31 1.20 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.17 2.81 8.06 -52.48 -0.42 2.39 16 32 H 0.15 3.35 8.06 -52.49 -0.42 2.93 16 33 H 0.11 1.69 7.61 -52.48 -0.40 1.29 16 34 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.13 2.70 5.72 -52.48 -0.30 2.40 16 37 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 317.66 15.07 4.79 4.79 Total: -1.00 -30.53 317.66 -6.66 -37.19 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -4.65 Total: 7.92 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -2.74 Total: -24.24 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.97 Total: -36.40 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: 0.00 Total: -4.22 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.53 -6.66 -37.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242557274.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.213 kcal (2) G-P(sol) polarization free energy of solvation -30.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds