Wall clock time and date at job start Mon Mar 30 2020 01:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47237 * 2 1 4 4 N 1.46500 * 109.46840 * 120.00119 * 2 1 3 5 5 N 1.40067 * 126.14426 * 298.81582 * 4 2 1 6 6 C 1.30909 * 108.52662 * 179.97438 * 5 4 2 7 7 C 1.39475 * 108.60942 * 0.02562 * 6 5 4 8 8 C 1.36335 * 126.13621 * 118.51267 * 4 2 1 9 9 C 1.47843 * 126.35156 * 0.02562 * 8 4 2 10 10 C 1.39461 * 120.18041 * 311.08189 * 9 8 4 11 11 C 1.37955 * 119.92902 * 179.97438 * 10 9 8 12 12 C 1.38474 * 120.29294 * 359.97438 * 11 10 9 13 13 C 1.38119 * 120.35927 * 0.02562 * 12 11 10 14 14 C 1.38730 * 120.06737 * 359.70366 * 13 12 11 15 15 O 1.35642 * 120.14879 * 180.27691 * 14 13 12 16 16 C 1.34813 * 117.00139 * 6.10256 * 15 14 13 17 17 H 1.08000 * 119.99473 * 5.36498 * 16 15 14 18 18 C 1.38635 * 120.00269 * 185.36987 * 16 15 14 19 19 N 1.31567 * 119.99649 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00057 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47021 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47012 * 120.00012 * 20 18 16 23 23 H 1.48494 * 109.47170 * 239.99881 * 20 18 16 24 24 H 1.08994 * 109.47338 * 59.99531 * 1 2 3 25 25 H 1.09007 * 109.46993 * 299.99940 * 1 2 3 26 26 H 1.08997 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46786 * 240.00005 * 2 1 3 28 28 H 1.09001 * 109.47174 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47340 * 300.00468 * 3 2 1 30 30 H 1.09007 * 109.47081 * 60.00113 * 3 2 1 31 31 H 1.08003 * 125.69017 * 180.02562 * 6 5 4 32 32 H 1.07996 * 126.07447 * 180.02562 * 7 6 5 33 33 H 1.08005 * 120.03380 * 359.97438 * 10 9 8 34 34 H 1.08005 * 119.85660 * 179.97438 * 11 10 9 35 35 H 1.08001 * 119.82392 * 180.02562 * 12 11 10 36 36 H 1.08006 * 119.96468 * 179.97438 * 13 12 11 37 37 H 0.97002 * 119.99480 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7796 -0.3127 2.5236 6 6 2.3750 -1.1700 3.3137 7 6 3.0170 -2.1274 2.5284 8 6 2.7818 -1.8200 1.2171 9 6 3.2685 -2.5707 0.0402 10 6 2.3875 -2.9167 -0.9841 11 6 2.8474 -3.6168 -2.0803 12 6 4.1813 -3.9778 -2.1692 13 6 5.0642 -3.6413 -1.1617 14 6 4.6190 -2.9326 -0.0554 15 8 5.4858 -2.5964 0.9323 16 6 6.7892 -2.8687 0.7216 17 1 7.1127 -3.2537 -0.2341 18 6 7.7142 -2.6545 1.7318 19 7 7.3200 -2.1851 2.8960 20 14 9.5202 -3.0325 1.4401 21 1 9.7016 -3.5453 0.0583 22 1 10.3200 -1.7937 1.6168 23 1 9.9747 -4.0581 2.4129 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.3700 -1.1408 4.3933 32 1 3.5930 -2.9656 2.8917 33 1 1.3464 -2.6369 -0.9192 34 1 2.1640 -3.8845 -2.8726 35 1 4.5332 -4.5255 -3.0309 36 1 6.1031 -3.9265 -1.2375 37 1 7.9673 -2.0350 3.6027 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242557274.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:23 Heat of formation + Delta-G solvation = 51.137846 kcal Electronic energy + Delta-G solvation = -20842.242878 eV Core-core repulsion = 17779.183659 eV Total energy + Delta-G solvation = -3063.059219 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.08378 -40.54428 -38.11242 -36.51146 -34.31149 -33.23374 -30.80398 -30.71574 -29.36126 -28.22079 -27.34315 -24.33631 -23.48254 -23.16878 -21.38505 -20.41709 -19.84946 -18.81199 -17.78926 -16.49607 -16.37517 -15.95861 -15.82932 -15.59008 -15.44111 -15.28884 -14.94677 -14.40190 -14.35856 -13.87718 -13.68795 -13.52281 -13.18144 -13.10561 -12.91482 -12.61274 -12.45632 -12.35359 -12.27673 -12.21300 -12.09848 -11.52956 -11.24083 -10.81115 -10.42094 -9.72701 -9.32074 -8.85644 -8.44875 -6.12615 0.19206 0.70020 1.10872 1.35185 1.43284 1.52689 1.65693 2.01399 2.16650 2.83366 3.17164 3.42972 3.53667 3.70124 3.96376 4.03733 4.11292 4.17158 4.27925 4.50498 4.55217 4.65265 4.67231 4.70215 4.78926 4.83950 4.89693 5.02150 5.09536 5.15258 5.20832 5.23681 5.29288 5.57934 5.64064 5.71935 5.82845 5.99023 6.16324 6.24384 6.82388 6.98291 7.78614 8.76339 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.006673 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.528923 B = 4194.815779 C = 5157.507911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.141 3.859 3 C -0.153 4.153 4 N -0.363 5.363 5 N -0.314 5.314 6 C 0.038 3.962 7 C -0.268 4.268 8 C 0.140 3.860 9 C -0.137 4.137 10 C -0.056 4.056 11 C -0.187 4.187 12 C -0.056 4.056 13 C -0.246 4.246 14 C 0.138 3.862 15 O -0.206 6.206 16 C -0.416 4.416 17 H 0.102 0.898 18 C -0.017 4.017 19 N -0.907 5.907 20 Si 1.014 2.986 21 H -0.250 1.250 22 H -0.272 1.272 23 H -0.269 1.269 24 H 0.107 0.893 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.106 0.894 28 H 0.033 0.967 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.202 0.798 32 H 0.117 0.883 33 H 0.140 0.860 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.124 0.876 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.196 0.831 -9.910 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.040 3.960 3 C -0.211 4.211 4 N -0.148 5.148 5 N -0.136 5.136 6 C -0.146 4.146 7 C -0.297 4.297 8 C 0.014 3.986 9 C -0.140 4.140 10 C -0.074 4.074 11 C -0.206 4.206 12 C -0.074 4.074 13 C -0.265 4.265 14 C 0.084 3.916 15 O -0.111 6.111 16 C -0.492 4.492 17 H 0.120 0.880 18 C -0.216 4.216 19 N -0.544 5.544 20 Si 0.834 3.166 21 H -0.173 1.173 22 H -0.198 1.198 23 H -0.194 1.194 24 H 0.125 0.875 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.124 0.876 28 H 0.052 0.948 29 H 0.127 0.873 30 H 0.079 0.921 31 H 0.218 0.782 32 H 0.135 0.865 33 H 0.158 0.842 34 H 0.177 0.823 35 H 0.169 0.831 36 H 0.141 0.859 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.927 2.156 -9.647 14.734 hybrid contribution 1.844 -0.958 0.723 2.200 sum -9.082 1.199 -8.924 12.789 Atomic orbital electron populations 1.22087 0.91243 1.03025 1.04221 1.21687 0.96909 0.93939 0.83421 1.22085 1.00283 0.94502 1.04243 1.49300 1.40502 1.19478 1.05555 1.77001 1.25862 1.23615 0.87117 1.23930 0.96912 0.92797 1.00937 1.21362 1.10323 1.05712 0.92291 1.19528 0.95081 0.89423 0.94594 1.17421 0.91267 1.08874 0.96471 1.21102 0.98220 0.96342 0.91772 1.21096 0.96055 1.03813 0.99602 1.21334 0.93156 0.95974 0.96971 1.21289 1.01746 1.06738 0.96707 1.19832 0.89800 0.92652 0.89275 1.84020 1.17457 1.71687 1.37887 1.21863 0.80063 1.46100 1.01203 0.88041 1.26510 1.05018 0.96078 0.94026 1.70230 1.36788 1.42932 1.04486 0.84586 0.74208 0.78324 0.79469 1.17294 1.19767 1.19434 0.87453 0.92290 0.92290 0.87624 0.94813 0.87266 0.92123 0.78170 0.86451 0.84249 0.82345 0.83092 0.85866 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.47 71.98 0.68 -2.48 16 2 C 0.14 4.02 3.32 44.99 0.15 4.17 16 3 C -0.15 -4.10 9.44 71.98 0.68 -3.42 16 4 N -0.36 -13.97 3.32 -315.18 -1.05 -15.01 16 5 N -0.31 -12.61 12.42 -57.24 -0.71 -13.32 16 6 C 0.04 1.56 11.98 85.13 1.02 2.58 16 7 C -0.27 -12.60 9.97 22.21 0.22 -12.38 16 8 C 0.14 6.21 6.18 40.63 0.25 6.46 16 9 C -0.14 -5.81 5.43 -19.98 -0.11 -5.92 16 10 C -0.06 -1.78 8.21 22.50 0.18 -1.60 16 11 C -0.19 -5.14 10.03 22.26 0.22 -4.92 16 12 C -0.06 -1.73 10.03 22.30 0.22 -1.51 16 13 C -0.25 -10.11 9.12 22.36 0.20 -9.91 16 14 C 0.14 6.68 6.63 22.85 0.15 6.84 16 15 O -0.21 -12.08 8.61 -21.37 -0.18 -12.26 16 16 C -0.42 -23.72 9.44 67.91 0.64 -23.08 16 17 H 0.10 5.28 5.30 -2.91 -0.02 5.27 16 18 C -0.02 -0.98 5.49 84.83 0.47 -0.51 16 19 N -0.91 -55.28 13.67 21.61 0.30 -54.98 16 20 Si 1.01 42.49 29.55 68.60 2.03 44.52 16 21 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 24 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 27 H 0.11 2.89 5.99 -2.39 -0.01 2.88 16 28 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.20 6.71 8.06 -2.91 -0.02 6.69 16 32 H 0.12 6.05 8.06 -2.91 -0.02 6.03 16 33 H 0.14 3.65 7.61 -2.91 -0.02 3.63 16 34 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 36 H 0.12 5.16 5.72 -2.91 -0.02 5.15 16 37 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -73.34 317.66 6.44 -66.90 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 1.07 Total: 29.82 kcal Atomic # 6 Polarization: -50.65 SS G_CDS: 4.99 Total: -45.66 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -1.46 Total: -83.31 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.18 Total: -12.26 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -73.34 6.44 -66.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242557274.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.035 kcal (2) G-P(sol) polarization free energy of solvation -73.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds