Wall clock time and date at job start Mon Mar 30 2020 01:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46807 * 2 1 4 4 N 1.46502 * 109.46704 * 179.97438 * 3 2 1 5 5 N 1.40077 * 126.13998 * 84.91282 * 4 3 2 6 6 C 1.30905 * 108.52281 * 179.72913 * 5 4 3 7 7 C 1.39471 * 108.61229 * 0.02562 * 6 5 4 8 8 C 1.36330 * 126.14330 * 264.59824 * 4 3 2 9 9 C 1.47848 * 126.34789 * 0.24407 * 8 4 3 10 10 C 1.39468 * 120.17881 * 305.95883 * 9 8 4 11 11 C 1.37962 * 119.92765 * 179.97438 * 10 9 8 12 12 C 1.38475 * 120.28985 * 359.97438 * 11 10 9 13 13 C 1.38117 * 120.36601 * 0.02562 * 12 11 10 14 14 C 1.38738 * 120.06204 * 359.70253 * 13 12 11 15 15 O 1.35647 * 120.14529 * 180.27813 * 14 13 12 16 16 C 1.34804 * 117.00331 * 353.89280 * 15 14 13 17 17 H 1.08007 * 119.99637 * 354.90275 * 16 15 14 18 18 C 1.38637 * 120.00389 * 174.89924 * 16 15 14 19 19 N 1.31563 * 119.99977 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99765 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47528 * 89.99903 * 20 18 16 22 22 H 1.48508 * 109.47022 * 210.00227 * 20 18 16 23 23 H 1.48499 * 109.47278 * 329.99914 * 20 18 16 24 24 H 1.09003 * 109.47355 * 300.00203 * 1 2 3 25 25 H 1.09001 * 109.47389 * 60.00113 * 1 2 3 26 26 H 1.09003 * 109.47435 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47095 * 240.00254 * 2 1 3 28 28 H 1.09001 * 109.46940 * 120.00176 * 2 1 3 29 29 H 1.09003 * 109.47061 * 60.00260 * 3 2 1 30 30 H 1.09001 * 109.47514 * 299.99825 * 3 2 1 31 31 H 1.08004 * 125.69081 * 179.97438 * 6 5 4 32 32 H 1.08002 * 126.08135 * 180.02562 * 7 6 5 33 33 H 1.07993 * 120.03650 * 359.97438 * 10 9 8 34 34 H 1.07995 * 119.85531 * 179.97438 * 11 10 9 35 35 H 1.08002 * 119.81593 * 180.02562 * 12 11 10 36 36 H 1.07994 * 119.97376 * 179.97438 * 13 12 11 37 37 H 0.97002 * 119.99901 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 7 4.3315 1.3420 -1.1258 6 6 5.5790 1.3830 -0.7312 7 6 5.6026 1.5102 0.6575 8 6 4.3085 1.5463 1.0970 9 6 3.8632 1.6742 2.5010 10 6 2.9736 2.6847 2.8650 11 6 2.5610 2.7990 4.1765 12 6 3.0258 1.9138 5.1346 13 6 3.9070 0.9085 4.7874 14 6 4.3273 0.7765 3.4718 15 8 5.1884 -0.2137 3.1279 16 6 5.6975 -0.9576 4.1302 17 1 5.4806 -0.7014 5.1568 18 6 6.4993 -2.0516 3.8434 19 7 6.9957 -2.7779 4.8216 20 14 6.8748 -2.4943 2.0679 21 1 8.1075 -1.7902 1.6322 22 1 7.0767 -3.9613 1.9556 23 1 5.7388 -2.0835 1.2044 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 6.4453 1.3268 -1.3737 32 1 6.4861 1.5707 1.2758 33 1 2.6081 3.3770 2.1211 34 1 1.8724 3.5822 4.4572 35 1 2.6975 2.0100 6.1590 36 1 4.2659 0.2219 5.5398 37 1 7.5564 -3.5436 4.6209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242844512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:27 Heat of formation + Delta-G solvation = 67.047603 kcal Electronic energy + Delta-G solvation = -20862.625817 eV Core-core repulsion = 17800.256497 eV Total energy + Delta-G solvation = -3062.369320 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.70336 -39.07370 -36.65086 -35.16929 -32.53635 -31.91317 -30.79882 -29.45153 -28.03719 -26.04571 -25.35973 -22.69411 -21.86460 -21.47441 -20.32029 -19.53748 -17.99357 -17.42352 -16.40184 -15.21296 -15.05354 -14.84087 -14.40219 -14.15699 -13.97953 -13.78082 -13.62037 -13.23025 -12.97438 -12.57448 -12.37660 -12.24894 -12.04099 -11.83940 -11.51441 -11.31551 -11.00950 -10.93913 -10.81176 -10.74893 -10.32546 -10.17036 -9.54401 -9.05555 -8.93559 -8.37309 -7.93836 -7.41423 -6.51196 -4.17390 1.61342 2.12164 2.42486 2.93288 3.20801 3.24333 3.37891 3.42886 4.19701 4.33927 4.68149 4.74393 4.90432 5.00190 5.03670 5.16874 5.25470 5.40020 5.47600 5.53480 5.63610 5.67588 5.84031 5.93567 5.97418 6.08235 6.18015 6.21799 6.28339 6.38526 6.55579 6.63347 6.91933 6.98659 7.13733 7.15369 7.44398 7.48129 7.67840 7.91500 8.16780 8.83719 9.44341 10.55408 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.008164 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.381589 B = 3428.990857 C = 4306.053698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.135 3.865 4 N -0.373 5.373 5 N -0.309 5.309 6 C 0.041 3.959 7 C -0.253 4.253 8 C 0.160 3.840 9 C -0.125 4.125 10 C -0.059 4.059 11 C -0.207 4.207 12 C -0.063 4.063 13 C -0.219 4.219 14 C 0.184 3.816 15 O -0.196 6.196 16 C -0.392 4.392 17 H 0.108 0.892 18 C 0.069 3.931 19 N -0.873 5.873 20 Si 0.900 3.100 21 H -0.269 1.269 22 H -0.283 1.283 23 H -0.257 1.257 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.177 0.823 32 H 0.145 0.855 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.138 0.862 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.151 8.049 -6.005 13.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.014 3.986 4 N -0.156 5.156 5 N -0.131 5.131 6 C -0.144 4.144 7 C -0.282 4.282 8 C 0.034 3.966 9 C -0.128 4.128 10 C -0.078 4.078 11 C -0.226 4.226 12 C -0.082 4.082 13 C -0.239 4.239 14 C 0.129 3.871 15 O -0.099 6.099 16 C -0.467 4.467 17 H 0.125 0.875 18 C -0.135 4.135 19 N -0.509 5.509 20 Si 0.726 3.274 21 H -0.194 1.194 22 H -0.209 1.209 23 H -0.180 1.180 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.194 0.806 32 H 0.163 0.837 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.155 0.845 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.820 7.654 -7.198 14.381 hybrid contribution 0.886 -0.363 0.249 0.990 sum -8.934 7.291 -6.948 13.463 Atomic orbital electron populations 1.21678 0.94641 1.02243 1.01847 1.21913 0.96263 0.96236 1.03642 1.21697 0.74923 0.98327 1.03670 1.48928 1.05699 1.57387 1.03606 1.77159 1.01736 1.25742 1.08430 1.23594 0.94997 1.00536 0.95235 1.21407 0.96425 1.15794 0.94554 1.19410 0.90427 0.99587 0.87209 1.17066 1.06786 1.00379 0.88599 1.20684 0.95320 0.95659 0.96154 1.20550 1.06083 1.02838 0.93165 1.20924 0.95077 0.93659 0.98534 1.21251 1.03544 1.02577 0.96491 1.18983 0.88499 0.87917 0.91731 1.83634 1.50886 1.39047 1.36331 1.20796 1.29121 1.09177 0.87600 0.87477 1.24443 0.95305 0.94237 0.99533 1.69645 1.31986 1.17293 1.32003 0.86231 0.80319 0.77357 0.83539 1.19437 1.20909 1.18049 0.92311 0.92623 0.92162 0.91239 0.90945 0.88868 0.89583 0.80596 0.83696 0.86976 0.87019 0.86873 0.84464 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.14 -1.97 6.26 -26.73 -0.17 -2.14 16 3 C 0.14 1.91 6.32 -4.04 -0.03 1.89 16 4 N -0.37 -6.74 3.66 -57.42 -0.21 -6.95 16 5 N -0.31 -5.79 12.56 30.55 0.38 -5.40 16 6 C 0.04 0.73 11.98 -17.49 -0.21 0.52 16 7 C -0.25 -5.02 10.23 -39.67 -0.41 -5.42 16 8 C 0.16 3.16 6.07 -82.49 -0.50 2.66 16 9 C -0.12 -2.45 5.50 -104.79 -0.58 -3.02 16 10 C -0.06 -0.97 8.41 -39.22 -0.33 -1.30 16 11 C -0.21 -3.18 10.03 -39.59 -0.40 -3.58 16 12 C -0.06 -1.06 10.03 -39.54 -0.40 -1.45 16 13 C -0.22 -4.45 9.13 -39.44 -0.36 -4.81 16 14 C 0.18 4.08 6.64 -38.68 -0.26 3.83 16 15 O -0.20 -5.00 7.63 0.44 0.00 -4.99 16 16 C -0.39 -10.65 9.90 30.88 0.31 -10.34 16 17 H 0.11 2.95 5.53 -52.48 -0.29 2.66 16 18 C 0.07 1.91 5.49 -17.52 -0.10 1.81 16 19 N -0.87 -24.62 13.96 55.48 0.77 -23.85 16 20 Si 0.90 21.81 28.62 -169.99 -4.86 16.94 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.26 -6.47 7.11 56.52 0.40 -6.07 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.09 1.21 5.91 -51.93 -0.31 0.90 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.18 2.49 8.06 -52.48 -0.42 2.07 16 32 H 0.15 2.87 8.06 -52.49 -0.42 2.44 16 33 H 0.11 1.57 7.48 -52.49 -0.39 1.18 16 34 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.14 2.91 5.72 -52.49 -0.30 2.61 16 37 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 317.67 15.07 4.79 4.79 Total: -1.00 -30.05 317.67 -6.82 -36.88 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.65 Total: 5.10 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -3.05 Total: -22.51 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.95 Total: -36.20 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: 0.00 Total: -4.99 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.86 Total: 16.94 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.05 -6.82 -36.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242844512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.926 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds