Wall clock time and date at job start Mon Mar 30 2020 01:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46807 * 2 1 4 4 N 1.46502 * 109.46704 * 179.97438 * 3 2 1 5 5 N 1.40077 * 126.13998 * 84.91282 * 4 3 2 6 6 C 1.30905 * 108.52281 * 179.72913 * 5 4 3 7 7 C 1.39471 * 108.61229 * 0.02562 * 6 5 4 8 8 C 1.36330 * 126.14330 * 264.59824 * 4 3 2 9 9 C 1.47848 * 126.34789 * 0.24407 * 8 4 3 10 10 C 1.39468 * 120.17881 * 305.95883 * 9 8 4 11 11 C 1.37962 * 119.92765 * 179.97438 * 10 9 8 12 12 C 1.38475 * 120.28985 * 359.97438 * 11 10 9 13 13 C 1.38117 * 120.36601 * 0.02562 * 12 11 10 14 14 C 1.38738 * 120.06204 * 359.70253 * 13 12 11 15 15 O 1.35647 * 120.14529 * 180.27813 * 14 13 12 16 16 C 1.34804 * 117.00331 * 353.89280 * 15 14 13 17 17 H 1.08007 * 119.99637 * 354.90275 * 16 15 14 18 18 C 1.38637 * 120.00389 * 174.89924 * 16 15 14 19 19 N 1.31563 * 119.99977 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99765 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47528 * 89.99903 * 20 18 16 22 22 H 1.48508 * 109.47022 * 210.00227 * 20 18 16 23 23 H 1.48499 * 109.47278 * 329.99914 * 20 18 16 24 24 H 1.09003 * 109.47355 * 300.00203 * 1 2 3 25 25 H 1.09001 * 109.47389 * 60.00113 * 1 2 3 26 26 H 1.09003 * 109.47435 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47095 * 240.00254 * 2 1 3 28 28 H 1.09001 * 109.46940 * 120.00176 * 2 1 3 29 29 H 1.09003 * 109.47061 * 60.00260 * 3 2 1 30 30 H 1.09001 * 109.47514 * 299.99825 * 3 2 1 31 31 H 1.08004 * 125.69081 * 179.97438 * 6 5 4 32 32 H 1.08002 * 126.08135 * 180.02562 * 7 6 5 33 33 H 1.07993 * 120.03650 * 359.97438 * 10 9 8 34 34 H 1.07995 * 119.85531 * 179.97438 * 11 10 9 35 35 H 1.08002 * 119.81593 * 180.02562 * 12 11 10 36 36 H 1.07994 * 119.97376 * 179.97438 * 13 12 11 37 37 H 0.97002 * 119.99901 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 7 4.3315 1.3420 -1.1258 6 6 5.5790 1.3830 -0.7312 7 6 5.6026 1.5102 0.6575 8 6 4.3085 1.5463 1.0970 9 6 3.8632 1.6742 2.5010 10 6 2.9736 2.6847 2.8650 11 6 2.5610 2.7990 4.1765 12 6 3.0258 1.9138 5.1346 13 6 3.9070 0.9085 4.7874 14 6 4.3273 0.7765 3.4718 15 8 5.1884 -0.2137 3.1279 16 6 5.6975 -0.9576 4.1302 17 1 5.4806 -0.7014 5.1568 18 6 6.4993 -2.0516 3.8434 19 7 6.9957 -2.7779 4.8216 20 14 6.8748 -2.4943 2.0679 21 1 8.1075 -1.7902 1.6322 22 1 7.0767 -3.9613 1.9556 23 1 5.7388 -2.0835 1.2044 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 6.4453 1.3268 -1.3737 32 1 6.4861 1.5707 1.2758 33 1 2.6081 3.3770 2.1211 34 1 1.8724 3.5822 4.4572 35 1 2.6975 2.0100 6.1590 36 1 4.2659 0.2219 5.5398 37 1 7.5564 -3.5436 4.6209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242844512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:26 Heat of formation + Delta-G solvation = 50.017021 kcal Electronic energy + Delta-G solvation = -20863.364319 eV Core-core repulsion = 17800.256497 eV Total energy + Delta-G solvation = -3063.107822 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.13577 -40.69495 -38.25457 -36.30899 -34.50956 -33.35977 -32.06589 -30.96221 -29.54050 -27.28902 -27.15701 -24.12399 -23.20550 -22.86494 -21.72380 -20.97291 -19.84584 -19.03008 -17.89881 -16.74042 -16.37840 -16.28623 -15.82876 -15.75398 -15.54363 -15.40656 -15.02487 -14.58486 -14.31702 -14.17212 -14.04805 -13.83046 -13.15559 -13.07510 -12.90626 -12.64669 -12.58170 -12.39952 -12.29926 -12.07902 -11.87745 -11.67796 -11.36154 -10.94899 -10.45759 -9.77648 -9.43050 -9.00822 -8.54620 -6.24261 0.15160 0.62835 0.98131 1.26002 1.29405 1.46805 1.62205 1.91920 2.22900 2.72678 3.02339 3.06778 3.56650 3.61161 3.86561 4.02733 4.05636 4.22873 4.25356 4.36996 4.46391 4.52366 4.56804 4.68369 4.74607 4.78584 4.87838 5.05487 5.07703 5.11216 5.19115 5.29394 5.38657 5.51042 5.65897 5.70314 5.74560 5.85446 6.11599 6.16929 6.73788 6.81316 7.56685 8.56689 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013653 B = 0.008164 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.381589 B = 3428.990857 C = 4306.053698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.138 4.138 3 C 0.127 3.873 4 N -0.371 5.371 5 N -0.320 5.320 6 C 0.041 3.959 7 C -0.278 4.278 8 C 0.143 3.857 9 C -0.125 4.125 10 C -0.055 4.055 11 C -0.175 4.175 12 C -0.059 4.059 13 C -0.237 4.237 14 C 0.148 3.852 15 O -0.228 6.228 16 C -0.394 4.394 17 H 0.088 0.912 18 C 0.022 3.978 19 N -0.916 5.916 20 Si 0.957 3.043 21 H -0.261 1.261 22 H -0.271 1.271 23 H -0.277 1.277 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.037 0.963 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.209 0.791 32 H 0.134 0.866 33 H 0.147 0.853 34 H 0.162 0.838 35 H 0.148 0.852 36 H 0.115 0.885 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.772 10.675 -7.109 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.177 4.177 3 C 0.007 3.993 4 N -0.155 5.155 5 N -0.142 5.142 6 C -0.143 4.143 7 C -0.307 4.307 8 C 0.016 3.984 9 C -0.128 4.128 10 C -0.074 4.074 11 C -0.194 4.194 12 C -0.077 4.077 13 C -0.256 4.256 14 C 0.096 3.904 15 O -0.134 6.134 16 C -0.470 4.470 17 H 0.106 0.894 18 C -0.177 4.177 19 N -0.557 5.557 20 Si 0.781 3.219 21 H -0.186 1.186 22 H -0.195 1.195 23 H -0.202 1.202 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.225 0.775 32 H 0.152 0.848 33 H 0.164 0.836 34 H 0.179 0.821 35 H 0.166 0.834 36 H 0.133 0.867 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.483 10.318 -8.305 18.200 hybrid contribution 1.436 -0.869 0.627 1.792 sum -11.047 9.448 -7.678 16.439 Atomic orbital electron populations 1.21645 0.91569 1.02983 1.03417 1.21863 0.98852 0.95729 1.01213 1.22080 0.72834 0.98698 1.05679 1.49228 1.06942 1.56506 1.02798 1.77111 1.02116 1.25984 1.08956 1.24077 0.95849 0.99544 0.94839 1.21561 0.96502 1.17009 0.95647 1.19549 0.90962 1.00072 0.87820 1.17357 1.06880 1.00383 0.88164 1.21132 0.93834 0.94737 0.97694 1.21149 1.04228 1.02044 0.91933 1.21337 0.93359 0.92180 1.00847 1.21308 1.05032 1.03879 0.95429 1.19527 0.89332 0.88122 0.93404 1.83593 1.53490 1.40825 1.35534 1.20728 1.29348 1.09422 0.87494 0.89442 1.25046 0.95684 0.94507 1.02507 1.69708 1.34063 1.18565 1.33321 0.85398 0.79397 0.77647 0.79449 1.18553 1.19548 1.20205 0.91232 0.90475 0.91949 0.92662 0.94424 0.87259 0.87010 0.77453 0.84821 0.83558 0.82087 0.83404 0.86696 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.91 71.98 0.71 -1.78 16 2 C -0.14 -3.66 6.26 30.59 0.19 -3.47 16 3 C 0.13 3.25 6.32 86.38 0.55 3.80 16 4 N -0.37 -12.90 3.66 -335.58 -1.23 -14.13 16 5 N -0.32 -11.57 12.56 -57.25 -0.72 -12.29 16 6 C 0.04 1.44 11.98 85.13 1.02 2.46 16 7 C -0.28 -11.12 10.23 22.21 0.23 -10.89 16 8 C 0.14 5.58 6.07 40.63 0.25 5.83 16 9 C -0.12 -4.76 5.50 -19.98 -0.11 -4.87 16 10 C -0.06 -1.59 8.41 22.50 0.19 -1.40 16 11 C -0.18 -4.44 10.03 22.26 0.22 -4.21 16 12 C -0.06 -1.78 10.03 22.30 0.22 -1.56 16 13 C -0.24 -9.72 9.13 22.36 0.20 -9.52 16 14 C 0.15 6.71 6.64 22.85 0.15 6.86 16 15 O -0.23 -12.24 7.63 -21.34 -0.16 -12.41 16 16 C -0.39 -22.74 9.90 67.92 0.67 -22.06 16 17 H 0.09 5.21 5.53 -2.91 -0.02 5.19 16 18 C 0.02 1.27 5.49 84.83 0.47 1.74 16 19 N -0.92 -54.24 13.96 21.61 0.30 -53.93 16 20 Si 0.96 47.09 28.62 68.60 1.96 49.06 16 21 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.28 -14.35 7.11 99.48 0.71 -13.64 16 24 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.11 2.41 5.91 -2.39 -0.01 2.39 16 30 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.21 5.56 8.06 -2.91 -0.02 5.54 16 32 H 0.13 5.51 8.06 -2.91 -0.02 5.49 16 33 H 0.15 3.26 7.48 -2.91 -0.02 3.23 16 34 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 35 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.12 5.18 5.72 -2.91 -0.02 5.16 16 37 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -69.75 317.67 6.19 -63.56 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 1.07 Total: 19.21 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 4.97 Total: -39.07 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -1.64 Total: -80.35 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.16 Total: -12.41 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.96 Total: 49.06 kcal Total: -69.75 6.19 -63.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242844512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.579 kcal (2) G-P(sol) polarization free energy of solvation -69.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds