Wall clock time and date at job start Mon Mar 30 2020 01:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47264 * 2 1 4 4 N 1.46498 * 109.46935 * 120.00173 * 2 1 3 5 5 C 1.34851 * 125.89559 * 274.99997 * 4 2 1 6 6 C 1.36468 * 107.60469 * 179.97438 * 5 4 2 7 7 C 1.48440 * 126.22259 * 180.02562 * 6 5 4 8 8 C 1.39381 * 120.05339 * 359.72451 * 7 6 5 9 9 C 1.37871 * 119.95033 * 179.76478 * 8 7 6 10 10 C 1.38973 * 120.05092 * 0.53006 * 9 8 7 11 11 O 1.35727 * 119.95471 * 179.72078 * 10 9 8 12 12 C 1.34812 * 117.00323 * 174.43654 * 11 10 9 13 13 H 1.08003 * 119.99588 * 5.04781 * 12 11 10 14 14 C 1.38629 * 120.00161 * 185.05771 * 12 11 10 15 15 N 1.31570 * 119.99598 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00301 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46921 * 59.99580 * 16 14 12 18 18 H 1.48494 * 109.47325 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46857 * 300.00351 * 16 14 12 20 20 C 1.38973 * 120.09717 * 359.69990 * 10 9 8 21 21 C 1.37878 * 120.04629 * 0.04493 * 20 10 9 22 22 C 1.40858 * 107.54797 * 359.97438 * 6 5 4 23 23 N 1.30674 * 108.10149 * 359.75415 * 22 6 5 24 24 H 1.09001 * 109.47017 * 59.99617 * 1 2 3 25 25 H 1.08997 * 109.46890 * 300.00012 * 1 2 3 26 26 H 1.08995 * 109.47372 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46975 * 239.99815 * 2 1 3 28 28 H 1.09000 * 109.47267 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47146 * 299.99661 * 3 2 1 30 30 H 1.08997 * 109.47177 * 60.00163 * 3 2 1 31 31 H 1.08009 * 126.19774 * 359.94124 * 5 4 2 32 32 H 1.07996 * 120.02235 * 0.02562 * 8 7 6 33 33 H 1.07999 * 119.97365 * 180.23152 * 9 8 7 34 34 H 0.97006 * 119.99468 * 180.02562 * 15 14 12 35 35 H 1.07999 * 119.97982 * 180.02562 * 20 10 9 36 36 H 1.08001 * 120.01970 * 180.02562 * 21 20 10 37 37 H 1.08003 * 125.94603 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1920 -0.1368 2.4133 6 6 2.6586 -1.1111 3.2473 7 6 2.9899 -0.9502 4.6853 8 6 2.8372 0.2903 5.3022 9 6 3.1410 0.4362 6.6391 10 6 3.6096 -0.6497 7.3689 11 8 3.9134 -0.5025 8.6835 12 6 4.2521 -1.6171 9.3620 13 1 4.3520 -2.5575 8.8402 14 6 4.4720 -1.5563 10.7294 15 7 4.3506 -0.4107 11.3648 16 14 4.9406 -3.1009 11.6697 17 1 6.2107 -3.6452 11.1259 18 1 5.1190 -2.7707 13.1064 19 1 3.8651 -4.1145 11.5239 20 6 3.7672 -1.8864 6.7546 21 6 3.4596 -2.0381 5.4192 22 6 2.7673 -2.2973 2.4956 23 7 2.3786 -2.0413 1.2746 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.9977 0.8917 2.6798 32 1 2.4772 1.1355 4.7345 33 1 3.0192 1.3963 7.1185 34 1 4.5049 -0.3681 12.3216 35 1 4.1311 -2.7291 7.3236 36 1 3.5819 -2.9994 4.9424 37 1 3.1080 -3.2532 2.8653 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:29 Heat of formation + Delta-G solvation = 67.273490 kcal Electronic energy + Delta-G solvation = -19509.342935 eV Core-core repulsion = 16446.983410 eV Total energy + Delta-G solvation = -3062.359525 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09349 -38.85859 -36.58699 -35.68116 -32.35238 -30.88119 -30.50331 -29.86999 -27.74629 -27.24608 -25.35373 -23.19195 -22.15103 -21.49946 -19.93139 -19.63925 -17.89148 -17.33586 -16.59658 -15.41365 -14.94560 -14.68224 -14.44782 -14.36276 -14.12133 -13.60501 -13.39760 -13.14207 -12.93265 -12.70291 -12.54830 -12.45705 -12.29357 -11.77349 -11.64105 -11.53234 -11.35420 -11.07656 -10.91601 -10.66607 -10.42323 -10.33362 -9.30556 -9.29922 -9.04075 -8.45253 -8.17280 -6.76918 -6.44019 -4.01283 1.78414 2.25964 2.28595 2.50611 3.12874 3.14706 3.18258 3.39285 3.98127 4.25424 4.56757 4.71846 4.73488 4.86106 4.99240 5.12178 5.12577 5.24768 5.31424 5.33537 5.46416 5.58098 5.63789 5.69795 5.79887 5.84776 5.89509 6.01069 6.22273 6.49154 6.69865 6.74505 6.95706 7.05725 7.17027 7.31302 7.42708 7.46252 7.83716 7.87409 8.01210 9.01659 9.72199 10.73896 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.044921 B = 0.003271 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.163952 B = 8559.295728 C = 9010.546461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.157 3.843 3 C -0.165 4.165 4 N -0.371 5.371 5 C 0.042 3.958 6 C -0.157 4.157 7 C -0.105 4.105 8 C -0.071 4.071 9 C -0.189 4.189 10 C 0.151 3.849 11 O -0.177 6.177 12 C -0.391 4.391 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.863 5.863 16 Si 0.941 3.059 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.270 1.270 20 C -0.229 4.229 21 C -0.063 4.063 22 C 0.050 3.950 23 N -0.304 5.304 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.169 0.831 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.270 0.730 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 1.358 -19.071 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 C -0.223 4.223 4 N -0.154 5.154 5 C -0.103 4.103 6 C -0.168 4.168 7 C -0.107 4.107 8 C -0.089 4.089 9 C -0.208 4.208 10 C 0.097 3.903 11 O -0.080 6.080 12 C -0.467 4.467 13 H 0.110 0.890 14 C -0.165 4.165 15 N -0.498 5.498 16 Si 0.765 3.235 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.195 1.195 20 C -0.248 4.248 21 C -0.082 4.082 22 C -0.136 4.136 23 N -0.124 5.124 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.117 0.883 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.186 0.814 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.080 0.920 35 H 0.146 0.854 36 H 0.126 0.874 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.387 1.243 -19.970 20.721 hybrid contribution 0.358 -0.470 1.331 1.457 sum -5.028 0.773 -18.638 19.320 Atomic orbital electron populations 1.22247 0.93896 1.03239 1.02948 1.21171 0.94630 0.92688 0.85975 1.22197 1.02426 0.94137 1.03556 1.48536 1.51491 1.07171 1.08226 1.22300 1.03051 0.99587 0.85359 1.18953 1.10436 0.92862 0.94517 1.17565 1.08784 0.94239 0.90091 1.20540 0.99157 0.95701 0.93518 1.20113 1.08525 0.98191 0.93971 1.19429 0.92080 0.93082 0.85710 1.83962 1.73541 1.34643 1.15878 1.21293 1.47819 0.87153 0.90464 0.89045 1.25284 0.96893 0.98696 0.95651 1.70039 1.45376 1.24612 1.09774 0.85785 0.79281 0.79966 0.78442 1.19487 1.20305 1.19471 1.21095 1.09962 0.98416 0.95375 1.20681 0.97201 0.97005 0.93315 1.23903 0.99809 0.99360 0.90515 1.77124 1.21196 0.93301 1.20781 0.90710 0.91803 0.91686 0.88312 0.91426 0.90169 0.91399 0.81398 0.87354 0.86493 0.91979 0.85447 0.87391 0.80241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 9.52 37.16 0.35 -0.89 16 2 C 0.16 1.38 3.92 -67.93 -0.27 1.11 16 3 C -0.16 -1.09 8.83 37.16 0.33 -0.76 16 4 N -0.37 -4.70 3.52 -54.59 -0.19 -4.89 16 5 C 0.04 0.56 9.97 -16.86 -0.17 0.39 16 6 C -0.16 -2.45 6.04 -105.34 -0.64 -3.09 16 7 C -0.10 -1.86 5.88 -104.84 -0.62 -2.48 16 8 C -0.07 -1.26 9.56 -39.29 -0.38 -1.64 16 9 C -0.19 -3.96 9.98 -39.44 -0.39 -4.36 16 10 C 0.15 3.64 6.65 -39.04 -0.26 3.38 16 11 O -0.18 -5.04 9.75 0.17 0.00 -5.04 16 12 C -0.39 -10.90 9.48 30.88 0.29 -10.61 16 13 H 0.09 2.35 5.19 -52.48 -0.27 2.07 16 14 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 15 N -0.86 -25.28 13.67 55.48 0.76 -24.52 16 16 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 17 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 20 C -0.23 -4.97 9.15 -39.44 -0.36 -5.33 16 21 C -0.06 -1.18 9.57 -39.29 -0.38 -1.56 16 22 C 0.05 0.75 11.42 -17.05 -0.19 0.55 16 23 N -0.30 -4.52 12.54 30.81 0.39 -4.13 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.44 7.14 -51.93 -0.37 0.07 16 31 H 0.17 1.81 6.47 -52.48 -0.34 1.47 16 32 H 0.11 1.57 7.01 -52.49 -0.37 1.21 16 33 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 34 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.13 2.75 5.62 -52.49 -0.30 2.45 16 36 H 0.11 1.69 7.04 -52.49 -0.37 1.32 16 37 H 0.18 2.26 7.34 -52.48 -0.39 1.87 16 LS Contribution 316.86 15.07 4.77 4.77 Total: -1.00 -32.25 316.86 -6.56 -38.81 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.50 Total: 3.86 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -2.77 Total: -24.31 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.95 Total: -33.54 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: 0.00 Total: -5.04 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.25 -6.56 -38.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.086 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds