Wall clock time and date at job start Mon Mar 30 2020 01:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47264 * 2 1 4 4 N 1.46498 * 109.46935 * 120.00173 * 2 1 3 5 5 C 1.34851 * 125.89559 * 274.99997 * 4 2 1 6 6 C 1.36468 * 107.60469 * 179.97438 * 5 4 2 7 7 C 1.48440 * 126.22259 * 180.02562 * 6 5 4 8 8 C 1.39381 * 120.05339 * 359.72451 * 7 6 5 9 9 C 1.37871 * 119.95033 * 179.76478 * 8 7 6 10 10 C 1.38973 * 120.05092 * 0.53006 * 9 8 7 11 11 O 1.35727 * 119.95471 * 179.72078 * 10 9 8 12 12 C 1.34812 * 117.00323 * 174.43654 * 11 10 9 13 13 H 1.08003 * 119.99588 * 5.04781 * 12 11 10 14 14 C 1.38629 * 120.00161 * 185.05771 * 12 11 10 15 15 N 1.31570 * 119.99598 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00301 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46921 * 59.99580 * 16 14 12 18 18 H 1.48494 * 109.47325 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46857 * 300.00351 * 16 14 12 20 20 C 1.38973 * 120.09717 * 359.69990 * 10 9 8 21 21 C 1.37878 * 120.04629 * 0.04493 * 20 10 9 22 22 C 1.40858 * 107.54797 * 359.97438 * 6 5 4 23 23 N 1.30674 * 108.10149 * 359.75415 * 22 6 5 24 24 H 1.09001 * 109.47017 * 59.99617 * 1 2 3 25 25 H 1.08997 * 109.46890 * 300.00012 * 1 2 3 26 26 H 1.08995 * 109.47372 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46975 * 239.99815 * 2 1 3 28 28 H 1.09000 * 109.47267 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47146 * 299.99661 * 3 2 1 30 30 H 1.08997 * 109.47177 * 60.00163 * 3 2 1 31 31 H 1.08009 * 126.19774 * 359.94124 * 5 4 2 32 32 H 1.07996 * 120.02235 * 0.02562 * 8 7 6 33 33 H 1.07999 * 119.97365 * 180.23152 * 9 8 7 34 34 H 0.97006 * 119.99468 * 180.02562 * 15 14 12 35 35 H 1.07999 * 119.97982 * 180.02562 * 20 10 9 36 36 H 1.08001 * 120.01970 * 180.02562 * 21 20 10 37 37 H 1.08003 * 125.94603 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1920 -0.1368 2.4133 6 6 2.6586 -1.1111 3.2473 7 6 2.9899 -0.9502 4.6853 8 6 2.8372 0.2903 5.3022 9 6 3.1410 0.4362 6.6391 10 6 3.6096 -0.6497 7.3689 11 8 3.9134 -0.5025 8.6835 12 6 4.2521 -1.6171 9.3620 13 1 4.3520 -2.5575 8.8402 14 6 4.4720 -1.5563 10.7294 15 7 4.3506 -0.4107 11.3648 16 14 4.9406 -3.1009 11.6697 17 1 6.2107 -3.6452 11.1259 18 1 5.1190 -2.7707 13.1064 19 1 3.8651 -4.1145 11.5239 20 6 3.7672 -1.8864 6.7546 21 6 3.4596 -2.0381 5.4192 22 6 2.7673 -2.2973 2.4956 23 7 2.3786 -2.0413 1.2746 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.9977 0.8917 2.6798 32 1 2.4772 1.1355 4.7345 33 1 3.0192 1.3963 7.1185 34 1 4.5049 -0.3681 12.3216 35 1 4.1311 -2.7291 7.3236 36 1 3.5819 -2.9994 4.9424 37 1 3.1080 -3.2532 2.8653 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:29 Heat of formation + Delta-G solvation = 47.942631 kcal Electronic energy + Delta-G solvation = -19510.181184 eV Core-core repulsion = 16446.983410 eV Total energy + Delta-G solvation = -3063.197774 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.18379 -40.58018 -38.18016 -36.56647 -34.29821 -32.29094 -31.92157 -31.03487 -28.79587 -28.15227 -27.25711 -24.35422 -23.61134 -22.83907 -21.21606 -20.70552 -19.65789 -18.89130 -17.94578 -16.38607 -16.27134 -16.14736 -16.03213 -15.57613 -15.44867 -15.13245 -14.79780 -14.45208 -14.09096 -13.88289 -13.79761 -13.44356 -13.20410 -13.07630 -13.01661 -12.66473 -12.58119 -12.29692 -12.27819 -12.11303 -12.02982 -11.54700 -11.10709 -10.84738 -10.35222 -9.96326 -9.75251 -8.44339 -8.30162 -6.10166 0.43159 0.65708 1.07963 1.37031 1.46726 1.53010 1.60304 2.04167 2.20699 2.94979 3.30960 3.50586 3.57530 3.90716 3.93013 4.00717 4.12598 4.18713 4.24105 4.37143 4.51730 4.61511 4.66082 4.71551 4.82077 4.83588 4.93509 4.94685 5.12418 5.18514 5.21887 5.24216 5.36528 5.52640 5.75013 5.78943 5.86946 6.06567 6.18394 6.25202 6.77420 7.01012 7.82889 8.79146 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.044921 B = 0.003271 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.163952 B = 8559.295728 C = 9010.546461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 C -0.161 4.161 4 N -0.364 5.364 5 C 0.065 3.935 6 C -0.196 4.196 7 C -0.075 4.075 8 C -0.067 4.067 9 C -0.196 4.196 10 C 0.106 3.894 11 O -0.232 6.232 12 C -0.413 4.413 13 H 0.102 0.898 14 C -0.023 4.023 15 N -0.922 5.922 16 Si 1.017 2.983 17 H -0.257 1.257 18 H -0.272 1.272 19 H -0.258 1.258 20 C -0.235 4.235 21 C -0.069 4.069 22 C 0.047 3.953 23 N -0.327 5.327 24 H 0.103 0.897 25 H 0.062 0.938 26 H 0.047 0.953 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.199 0.801 32 H 0.151 0.849 33 H 0.117 0.883 34 H 0.272 0.728 35 H 0.120 0.880 36 H 0.139 0.861 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 1.209 -22.367 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.046 3.954 3 C -0.219 4.219 4 N -0.147 5.147 5 C -0.082 4.082 6 C -0.207 4.207 7 C -0.077 4.077 8 C -0.085 4.085 9 C -0.215 4.215 10 C 0.056 3.944 11 O -0.139 6.139 12 C -0.489 4.489 13 H 0.119 0.881 14 C -0.220 4.220 15 N -0.560 5.560 16 Si 0.836 3.164 17 H -0.182 1.182 18 H -0.197 1.197 19 H -0.182 1.182 20 C -0.254 4.254 21 C -0.088 4.088 22 C -0.138 4.138 23 N -0.147 5.147 24 H 0.121 0.879 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.120 0.880 28 H 0.077 0.923 29 H 0.125 0.875 30 H 0.092 0.908 31 H 0.216 0.784 32 H 0.168 0.832 33 H 0.135 0.865 34 H 0.081 0.919 35 H 0.138 0.862 36 H 0.157 0.843 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -6.281 1.083 -23.365 24.219 hybrid contribution 0.475 -0.328 1.805 1.895 sum -5.807 0.755 -21.561 22.342 Atomic orbital electron populations 1.22221 0.92702 1.02529 1.04326 1.21612 0.95541 0.93707 0.84574 1.22212 1.01859 0.92580 1.05210 1.48987 1.49919 1.06594 1.09151 1.22750 1.00048 1.00333 0.85045 1.18871 1.13919 0.94355 0.93582 1.17893 1.04982 0.93600 0.91257 1.20938 0.98004 0.97267 0.92267 1.20379 1.08284 0.97531 0.95278 1.19980 0.94261 0.95175 0.84985 1.83925 1.76669 1.35330 1.17960 1.21787 1.48110 0.87742 0.91267 0.88112 1.26560 0.96698 1.02431 0.96354 1.70187 1.48352 1.27359 1.10119 0.84669 0.79497 0.75443 0.76761 1.18175 1.19669 1.18211 1.21179 1.10130 0.97405 0.96725 1.20999 0.96725 0.98958 0.92077 1.24187 0.99308 0.99904 0.90410 1.77118 1.21992 0.94740 1.20883 0.87862 0.91933 0.93410 0.87979 0.92280 0.87534 0.90826 0.78429 0.83152 0.86489 0.91896 0.86208 0.84331 0.78834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.52 71.98 0.69 -1.14 16 2 C 0.15 2.01 3.92 44.99 0.18 2.19 16 3 C -0.16 -1.42 8.83 71.98 0.64 -0.79 16 4 N -0.36 -7.97 3.52 -326.61 -1.15 -9.12 16 5 C 0.07 1.47 9.97 83.82 0.84 2.31 16 6 C -0.20 -5.49 6.04 -20.33 -0.12 -5.62 16 7 C -0.08 -2.50 5.88 -20.01 -0.12 -2.62 16 8 C -0.07 -2.23 9.56 22.46 0.21 -2.02 16 9 C -0.20 -8.29 9.98 22.36 0.22 -8.07 16 10 C 0.11 5.34 6.65 22.62 0.15 5.49 16 11 O -0.23 -14.09 9.75 -22.30 -0.22 -14.31 16 12 C -0.41 -24.28 9.48 67.91 0.64 -23.63 16 13 H 0.10 5.43 5.19 -2.91 -0.02 5.41 16 14 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 15 N -0.92 -57.01 13.67 21.61 0.30 -56.71 16 16 Si 1.02 43.21 29.55 68.60 2.03 45.23 16 17 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 18 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 19 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 20 C -0.24 -10.41 9.15 22.36 0.20 -10.21 16 21 C -0.07 -2.49 9.57 22.46 0.21 -2.27 16 22 C 0.05 1.28 11.42 85.51 0.98 2.26 16 23 N -0.33 -8.85 12.54 -56.45 -0.71 -9.56 16 24 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.10 1.37 8.14 -2.38 -0.02 1.36 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.59 7.14 -2.39 -0.02 0.57 16 31 H 0.20 3.16 6.47 -2.91 -0.02 3.14 16 32 H 0.15 3.71 7.01 -2.91 -0.02 3.69 16 33 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 34 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 35 H 0.12 5.36 5.62 -2.91 -0.02 5.35 16 36 H 0.14 4.05 7.04 -2.91 -0.02 4.03 16 37 H 0.19 4.37 7.34 -2.91 -0.02 4.35 16 Total: -1.00 -75.07 316.86 6.52 -68.56 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 1.08 Total: 20.88 kcal Atomic # 6 Polarization: -50.17 SS G_CDS: 5.19 Total: -44.99 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -1.56 Total: -75.38 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.22 Total: -14.31 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -75.07 6.52 -68.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.502 kcal (2) G-P(sol) polarization free energy of solvation -75.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds