Wall clock time and date at job start Mon Mar 30 2020 02:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00137 * 2 1 4 4 N 1.46506 * 109.47152 * 179.97438 * 3 2 1 5 5 C 1.34826 * 125.88994 * 0.02562 * 4 3 2 6 6 C 1.36436 * 107.60518 * 179.97438 * 5 4 3 7 7 C 1.48481 * 126.21931 * 180.02562 * 6 5 4 8 8 C 1.39321 * 120.11675 * 359.73183 * 7 6 5 9 9 C 1.38010 * 119.87764 * 179.78883 * 8 7 6 10 10 C 1.38338 * 120.11884 * 0.45902 * 9 8 7 11 11 C 1.38298 * 120.23672 * 359.79112 * 10 9 8 12 12 C 1.50693 * 119.94263 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47346 * 269.98173 * 12 11 10 14 14 H 1.08000 * 119.99700 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00214 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00150 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99977 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47190 * 89.99942 * 17 15 13 19 19 H 1.48506 * 109.47042 * 209.99735 * 17 15 13 20 20 H 1.48492 * 109.47204 * 329.99374 * 17 15 13 21 21 C 1.38054 * 120.11400 * 359.97438 * 11 10 9 22 22 C 1.40845 * 107.55649 * 0.02562 * 6 5 4 23 23 N 1.30663 * 108.09680 * 359.75693 * 22 6 5 24 24 H 1.09001 * 109.46459 * 300.00527 * 1 2 3 25 25 H 1.08994 * 109.46942 * 59.99884 * 1 2 3 26 26 H 1.08997 * 109.46916 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47678 * 60.00187 * 3 2 1 28 28 H 1.08998 * 109.47532 * 300.00132 * 3 2 1 29 29 H 1.07997 * 126.19837 * 359.97438 * 5 4 3 30 30 H 1.08001 * 120.06120 * 359.97438 * 8 7 6 31 31 H 1.07993 * 119.94071 * 180.23045 * 9 8 7 32 32 H 1.08001 * 119.88523 * 179.76158 * 10 9 8 33 33 H 1.09000 * 109.47523 * 29.97533 * 12 11 10 34 34 H 1.09001 * 109.47183 * 149.97934 * 12 11 10 35 35 H 0.96997 * 120.00083 * 180.02562 * 16 15 13 36 36 H 1.07999 * 120.05409 * 179.97438 * 21 11 10 37 37 H 1.08002 * 125.94962 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 7 3.4708 1.1897 0.0006 5 6 4.1724 0.0384 0.0006 6 6 5.4977 0.3628 0.0007 7 6 6.6347 -0.5921 0.0002 8 6 6.3949 -1.9646 0.0052 9 6 7.4554 -2.8477 0.0003 10 6 8.7546 -2.3725 0.0001 11 6 8.9982 -1.0111 0.0003 12 6 10.4160 -0.5007 0.0006 13 6 10.8884 -0.3303 1.4215 14 1 10.2277 -0.5675 2.2423 15 6 12.1635 0.1294 1.6737 16 7 12.9679 0.4187 0.6743 17 14 12.7487 0.3412 3.4350 18 1 13.3784 -0.9198 3.9024 19 1 13.7421 1.4433 3.4974 20 1 11.5909 0.6686 4.3053 21 6 7.9446 -0.1190 0.0003 22 6 5.5910 1.7681 0.0014 23 7 4.3787 2.2555 -0.0036 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.6888 1.8464 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 3.7602 -0.9598 0.0006 30 1 5.3810 -2.3366 0.0099 31 1 7.2707 -3.9118 0.0005 32 1 9.5817 -3.0670 0.0001 33 1 11.0595 -1.2151 -0.5129 34 1 10.4565 0.4597 -0.5134 35 1 13.8651 0.7418 0.8517 36 1 8.1359 0.9439 0.0010 37 1 6.5055 2.3428 0.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245220645.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:27 Heat of formation + Delta-G solvation = 34.872438 kcal Electronic energy + Delta-G solvation = -19378.070952 eV Core-core repulsion = 16314.306411 eV Total energy + Delta-G solvation = -3063.764540 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.27480 -39.86091 -38.96187 -35.52319 -33.98065 -33.13287 -32.24265 -30.13967 -28.71887 -27.98721 -26.30150 -25.22407 -23.69068 -22.63746 -21.48960 -20.61138 -18.70922 -18.45598 -17.50861 -17.38627 -17.04654 -16.54041 -15.83381 -15.67896 -15.59431 -15.50502 -14.52112 -14.48891 -14.10769 -13.94164 -13.79857 -13.64273 -13.21923 -13.18162 -12.76407 -12.60236 -12.47858 -12.26483 -12.12276 -11.56465 -11.55996 -11.26024 -11.16142 -10.58956 -10.53996 -10.33880 -9.40673 -8.63249 -8.18074 -6.31310 0.29661 0.74687 0.92200 1.12702 1.40316 1.41522 1.53228 1.94813 2.41873 2.71353 3.12205 3.24368 3.59906 3.91211 3.94641 4.05274 4.16793 4.26462 4.30747 4.46027 4.49114 4.52995 4.59437 4.64201 4.76532 4.86178 5.03199 5.14080 5.30211 5.39744 5.41817 5.48323 5.69664 5.76909 5.80173 5.88682 5.96890 6.17058 6.17535 6.35657 6.64933 6.81412 7.36999 8.91128 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027140 B = 0.003560 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.448700 B = 7862.655052 C = 8358.062955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.418 6.418 3 C 0.313 3.687 4 N -0.383 5.383 5 C 0.098 3.902 6 C -0.215 4.215 7 C 0.000 4.000 8 C -0.140 4.140 9 C -0.106 4.106 10 C -0.148 4.148 11 C -0.059 4.059 12 C 0.057 3.943 13 C -0.526 4.526 14 H 0.053 0.947 15 C 0.004 3.996 16 N -0.931 5.931 17 Si 0.965 3.035 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.267 1.267 21 C -0.136 4.136 22 C 0.060 3.940 23 N -0.310 5.310 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.109 0.891 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.202 0.798 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.111 0.889 33 H 0.003 0.997 34 H 0.002 0.998 35 H 0.265 0.735 36 H 0.109 0.891 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.522 -2.174 -1.521 26.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.337 6.337 3 C 0.154 3.846 4 N -0.165 5.165 5 C -0.049 4.049 6 C -0.226 4.226 7 C -0.002 4.002 8 C -0.158 4.158 9 C -0.124 4.124 10 C -0.167 4.167 11 C -0.059 4.059 12 C 0.020 3.980 13 C -0.564 4.564 14 H 0.071 0.929 15 C -0.194 4.194 16 N -0.571 5.571 17 Si 0.789 3.211 18 H -0.196 1.196 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.154 4.154 22 C -0.126 4.126 23 N -0.131 5.131 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.128 0.872 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.219 0.781 30 H 0.165 0.835 31 H 0.167 0.833 32 H 0.129 0.871 33 H 0.021 0.979 34 H 0.020 0.980 35 H 0.074 0.926 36 H 0.127 0.873 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -27.192 -1.182 -1.568 27.262 hybrid contribution 1.439 -0.132 0.638 1.580 sum -25.752 -1.314 -0.929 25.802 Atomic orbital electron populations 1.23047 0.75761 1.05185 1.02056 1.87693 1.23854 1.26244 1.95871 1.22246 0.72982 0.85799 1.03584 1.48726 1.06788 1.04224 1.56782 1.22752 0.90615 0.93520 0.98052 1.19021 0.92586 0.92915 1.18127 1.18118 0.90365 0.92801 0.98882 1.21224 0.99865 0.91373 1.03298 1.21257 0.91373 1.00709 0.99050 1.21152 0.97785 0.94544 1.03191 1.20280 0.95971 0.94300 0.95308 1.18098 0.88843 0.94831 0.96259 1.21373 0.98596 1.43981 0.92451 0.92876 1.25924 0.96809 0.94910 1.01769 1.70083 1.08115 1.45867 1.33034 0.85446 0.78163 0.78118 0.79345 1.19588 1.20429 1.19135 1.20950 0.91762 0.99148 1.03559 1.24273 0.96136 0.94188 0.98037 1.77191 0.98749 1.10445 1.26753 0.91969 0.91882 0.87245 0.88979 0.88849 0.78089 0.83458 0.83268 0.87058 0.97877 0.97989 0.92584 0.87303 0.78936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.42 -5.84 9.84 -148.98 -1.47 -7.31 16 3 C 0.31 4.79 7.65 127.77 0.98 5.76 16 4 N -0.38 -9.31 4.00 -462.85 -1.85 -11.16 16 5 C 0.10 2.46 10.25 83.81 0.86 3.32 16 6 C -0.22 -6.62 6.04 -20.33 -0.12 -6.74 16 7 C 0.00 -0.01 5.88 -20.04 -0.12 -0.13 16 8 C -0.14 -4.16 9.57 22.48 0.21 -3.95 16 9 C -0.11 -3.34 10.03 22.24 0.22 -3.12 16 10 C -0.15 -5.96 9.69 22.31 0.22 -5.74 16 11 C -0.06 -2.71 5.07 -19.90 -0.10 -2.81 16 12 C 0.06 3.15 5.10 29.10 0.15 3.30 16 13 C -0.53 -30.99 9.09 25.60 0.23 -30.76 16 14 H 0.05 3.10 7.74 -2.91 -0.02 3.07 16 15 C 0.00 0.22 5.46 84.65 0.46 0.68 16 16 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 17 Si 0.97 45.36 29.54 68.60 2.03 47.38 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 C -0.14 -5.65 9.23 22.48 0.21 -5.45 16 22 C 0.06 1.84 11.42 85.50 0.98 2.82 16 23 N -0.31 -9.06 12.54 -56.46 -0.71 -9.77 16 24 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 25 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 26 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.20 3.90 7.00 -2.91 -0.02 3.88 16 30 H 0.15 3.22 7.02 -2.91 -0.02 3.20 16 31 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 32 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 33 H 0.00 0.17 8.08 -2.39 -0.02 0.15 16 34 H 0.00 0.11 8.08 -2.39 -0.02 0.09 16 35 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.11 4.54 7.05 -2.91 -0.02 4.52 16 37 H 0.19 5.57 7.35 -2.91 -0.02 5.55 16 Total: -1.00 -73.17 323.47 4.77 -68.39 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.06 Total: 10.85 kcal Atomic # 6 Polarization: -46.79 SS G_CDS: 5.43 Total: -41.37 kcal Atomic # 7 Polarization: -75.67 SS G_CDS: -2.28 Total: -77.94 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -1.47 Total: -7.31 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -73.17 4.77 -68.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245220645.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.266 kcal (2) G-P(sol) polarization free energy of solvation -73.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds