Wall clock time and date at job start Mon Mar 30 2020 01:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38734 * 120.05067 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94237 * 179.74240 * 4 3 2 6 6 C 1.38264 * 120.05437 * 0.25588 * 5 4 3 7 7 C 1.50706 * 119.94244 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47061 * 90.00518 * 7 6 5 9 9 C 1.34942 * 126.04259 * 124.99985 * 8 7 6 10 10 C 1.35313 * 107.74807 * 179.97438 * 9 8 7 11 11 C 1.50702 * 126.03984 * 180.02562 * 10 9 8 12 12 C 1.50691 * 109.47555 * 89.99577 * 11 10 9 13 13 H 1.08002 * 120.00005 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00251 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99915 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99813 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47405 * 89.99756 * 16 14 12 18 18 H 1.48502 * 109.47007 * 209.99986 * 16 14 12 19 19 H 1.48500 * 109.47199 * 329.99747 * 16 14 12 20 20 C 1.39865 * 107.92178 * 359.97438 * 10 9 8 21 21 N 1.30832 * 108.20258 * 359.74056 * 20 10 9 22 22 C 1.38268 * 120.11230 * 359.97438 * 6 5 4 23 23 C 1.38137 * 120.05792 * 359.97438 * 22 6 5 24 24 H 1.09000 * 109.46994 * 59.99845 * 1 2 3 25 25 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47195 * 300.00308 * 1 2 3 27 27 H 1.08002 * 120.03267 * 0.02580 * 4 3 2 28 28 H 1.07999 * 119.97318 * 180.27444 * 5 4 3 29 29 H 1.09006 * 109.46840 * 210.00137 * 7 6 5 30 30 H 1.08995 * 109.47647 * 330.00094 * 7 6 5 31 31 H 1.07999 * 126.12668 * 359.95275 * 9 8 7 32 32 H 1.09003 * 109.47307 * 209.99858 * 11 10 9 33 33 H 1.09006 * 109.47160 * 329.99543 * 11 10 9 34 34 H 0.96998 * 119.99694 * 179.97438 * 15 14 12 35 35 H 1.08007 * 125.89592 * 180.02562 * 20 10 9 36 36 H 1.08007 * 119.96697 * 180.02562 * 22 6 5 37 37 H 1.08000 * 120.03391 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0059 6 6 3.3019 3.6758 -0.0054 7 6 3.9861 5.0186 -0.0107 8 7 4.2025 5.4509 -1.3936 9 6 3.7921 6.6171 -1.9343 10 6 4.1877 6.6338 -3.2282 11 6 3.9443 7.7459 -4.2156 12 6 5.0888 8.7247 -4.1621 13 1 5.9106 8.5580 -3.4814 14 6 5.0868 9.8332 -4.9821 15 7 4.0864 10.0360 -5.8113 16 14 6.5059 11.0462 -4.9161 17 1 7.5522 10.6373 -5.8875 18 1 6.0132 12.4038 -5.2616 19 1 7.0806 11.0617 -3.5469 20 6 4.8636 5.4369 -3.4870 21 7 4.8783 4.7296 -2.3864 22 6 1.9211 3.6048 -0.0001 23 6 1.2915 2.3752 0.0042 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 4.0209 0.3800 -0.0014 28 1 5.1345 2.5750 -0.0108 29 1 3.3600 5.7474 0.5041 30 1 4.9459 4.9394 0.4996 31 1 3.2454 7.3974 -1.4256 32 1 3.8688 7.3298 -5.2202 33 1 3.0158 8.2585 -3.9639 34 1 4.0849 10.8161 -6.3878 35 1 5.3021 5.1486 -4.4310 36 1 1.3342 4.5115 -0.0001 37 1 0.2129 2.3202 0.0080 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250054435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:15 Heat of formation + Delta-G solvation = 61.114979 kcal Electronic energy + Delta-G solvation = -19414.558629 eV Core-core repulsion = 16351.932050 eV Total energy + Delta-G solvation = -3062.626578 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.56747 -40.09806 -37.80425 -33.83998 -32.86355 -31.24600 -30.40412 -30.09862 -27.89395 -26.77694 -25.21018 -22.84840 -22.64349 -21.65512 -20.03712 -19.22944 -18.33861 -16.53179 -16.34450 -16.05083 -15.94099 -15.66916 -14.58547 -14.47877 -14.36206 -13.80572 -13.57939 -13.39613 -12.80619 -12.58795 -12.35178 -12.25357 -12.10742 -11.70339 -11.60783 -11.27372 -11.13042 -10.95796 -10.74775 -10.55556 -9.97580 -9.45565 -9.31010 -9.11384 -8.67512 -8.32963 -8.31595 -7.35144 -5.94077 -3.96886 1.18478 1.23919 2.63075 3.03849 3.11245 3.35225 3.41191 3.44829 3.74865 3.79615 4.52130 4.53177 4.67343 4.69996 4.80535 4.86024 4.97353 5.15880 5.20628 5.36615 5.39525 5.42548 5.55379 5.64425 5.78712 5.89777 6.08349 6.18027 6.42002 6.53719 6.59780 6.64855 6.97800 7.17888 7.47262 7.64306 7.79404 7.89328 8.02941 8.47910 8.49719 9.08951 9.66405 11.15165 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.040872 B = 0.003180 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.893542 B = 8803.325745 C = 9015.603954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.130 3.870 4 C -0.156 4.156 5 C -0.044 4.044 6 C -0.137 4.137 7 C 0.185 3.815 8 N -0.385 5.385 9 C 0.024 3.976 10 C -0.178 4.178 11 C 0.084 3.916 12 C -0.505 4.505 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.044 3.956 21 N -0.308 5.308 22 C -0.060 4.060 23 C -0.212 4.212 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.025 0.975 33 H 0.022 0.978 34 H 0.260 0.740 35 H 0.174 0.826 36 H 0.125 0.875 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.668 -16.406 14.360 22.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.084 3.916 4 C -0.174 4.174 5 C -0.063 4.063 6 C -0.138 4.138 7 C 0.064 3.936 8 N -0.170 5.170 9 C -0.118 4.118 10 C -0.189 4.189 11 C 0.046 3.954 12 C -0.544 4.544 13 H 0.072 0.928 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.142 4.142 21 N -0.129 5.129 22 C -0.078 4.078 23 C -0.231 4.231 24 H 0.074 0.926 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.181 0.819 32 H 0.044 0.956 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.191 0.809 36 H 0.143 0.857 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.304 -17.575 14.924 23.903 hybrid contribution 0.197 1.717 -0.481 1.794 sum -6.108 -15.858 14.443 22.302 Atomic orbital electron populations 1.23052 0.78425 1.03858 1.01449 1.86062 1.21392 1.27102 1.88722 1.19070 0.92419 0.84047 0.96029 1.20407 0.91281 0.98675 1.07060 1.20856 1.00053 0.90700 0.94682 1.19825 0.93633 0.95016 1.05301 1.20288 1.00553 0.93293 0.79496 1.48365 1.45244 1.14330 1.09026 1.22208 1.04043 0.90324 0.95240 1.20895 1.04177 0.98316 0.95469 1.17653 0.96791 0.89238 0.91702 1.21184 1.05740 1.06448 1.21032 0.92765 1.25014 0.95984 0.97978 0.95525 1.69958 1.30973 1.28647 1.24130 0.86600 0.82634 0.80491 0.78314 1.20697 1.21314 1.19999 1.23769 0.99812 0.93728 0.96908 1.77121 1.18180 1.20493 0.97143 1.20841 0.93835 0.97219 0.95954 1.21163 0.99944 0.92261 1.09714 0.92551 0.88291 0.92672 0.85179 0.85069 0.88460 0.89818 0.81950 0.95637 0.95961 0.93034 0.80876 0.85729 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.50 10.50 -19.44 -0.20 -3.71 16 3 C 0.13 1.54 6.69 -39.22 -0.26 1.28 16 4 C -0.16 -1.85 9.99 -39.43 -0.39 -2.25 16 5 C -0.04 -0.54 9.69 -39.61 -0.38 -0.93 16 6 C -0.14 -1.71 5.32 -104.60 -0.56 -2.26 16 7 C 0.19 2.34 6.63 -5.19 -0.03 2.30 16 8 N -0.38 -6.67 3.67 -62.55 -0.23 -6.90 16 9 C 0.02 0.46 11.36 -17.23 -0.20 0.27 16 10 C -0.18 -3.96 5.29 -105.06 -0.56 -4.51 16 11 C 0.08 2.19 5.46 -29.04 -0.16 2.04 16 12 C -0.51 -14.31 9.09 -34.44 -0.31 -14.62 16 13 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 16 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.04 0.91 11.96 -17.37 -0.21 0.70 16 21 N -0.31 -6.02 12.41 30.62 0.38 -5.63 16 22 C -0.06 -0.70 9.69 -39.61 -0.38 -1.08 16 23 C -0.21 -2.36 9.04 -39.44 -0.36 -2.71 16 24 H 0.06 0.37 7.67 -51.93 -0.40 -0.02 16 25 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 27 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 28 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.10 0.97 8.01 -51.93 -0.42 0.55 16 30 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 31 H 0.16 2.71 8.06 -52.49 -0.42 2.28 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.17 3.27 8.06 -52.48 -0.42 2.85 16 36 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 37 H 0.13 1.12 6.30 -52.49 -0.33 0.79 16 LS Contribution 324.69 15.07 4.89 4.89 Total: -1.00 -33.24 324.69 -7.24 -40.48 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -4.89 Total: -0.74 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -2.91 Total: -19.11 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.89 Total: -38.55 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: -0.20 Total: -3.71 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.24 -7.24 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250054435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.594 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds