Wall clock time and date at job start Mon Mar 30 2020 01:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99686 * 2 1 4 4 C 1.38734 * 120.05067 * 180.02562 * 3 2 1 5 5 C 1.38145 * 119.94237 * 179.74240 * 4 3 2 6 6 C 1.38264 * 120.05437 * 0.25588 * 5 4 3 7 7 C 1.50706 * 119.94244 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47061 * 90.00518 * 7 6 5 9 9 C 1.34942 * 126.04259 * 124.99985 * 8 7 6 10 10 C 1.35313 * 107.74807 * 179.97438 * 9 8 7 11 11 C 1.50702 * 126.03984 * 180.02562 * 10 9 8 12 12 C 1.50691 * 109.47555 * 89.99577 * 11 10 9 13 13 H 1.08002 * 120.00005 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00251 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99915 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99813 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47405 * 89.99756 * 16 14 12 18 18 H 1.48502 * 109.47007 * 209.99986 * 16 14 12 19 19 H 1.48500 * 109.47199 * 329.99747 * 16 14 12 20 20 C 1.39865 * 107.92178 * 359.97438 * 10 9 8 21 21 N 1.30832 * 108.20258 * 359.74056 * 20 10 9 22 22 C 1.38268 * 120.11230 * 359.97438 * 6 5 4 23 23 C 1.38137 * 120.05792 * 359.97438 * 22 6 5 24 24 H 1.09000 * 109.46994 * 59.99845 * 1 2 3 25 25 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47195 * 300.00308 * 1 2 3 27 27 H 1.08002 * 120.03267 * 0.02580 * 4 3 2 28 28 H 1.07999 * 119.97318 * 180.27444 * 5 4 3 29 29 H 1.09006 * 109.46840 * 210.00137 * 7 6 5 30 30 H 1.08995 * 109.47647 * 330.00094 * 7 6 5 31 31 H 1.07999 * 126.12668 * 359.95275 * 9 8 7 32 32 H 1.09003 * 109.47307 * 209.99858 * 11 10 9 33 33 H 1.09006 * 109.47160 * 329.99543 * 11 10 9 34 34 H 0.96998 * 119.99694 * 179.97438 * 15 14 12 35 35 H 1.08007 * 125.89592 * 180.02562 * 20 10 9 36 36 H 1.08007 * 119.96697 * 180.02562 * 22 6 5 37 37 H 1.08000 * 120.03391 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 -0.0059 6 6 3.3019 3.6758 -0.0054 7 6 3.9861 5.0186 -0.0107 8 7 4.2025 5.4509 -1.3936 9 6 3.7921 6.6171 -1.9343 10 6 4.1877 6.6338 -3.2282 11 6 3.9443 7.7459 -4.2156 12 6 5.0888 8.7247 -4.1621 13 1 5.9106 8.5580 -3.4814 14 6 5.0868 9.8332 -4.9821 15 7 4.0864 10.0360 -5.8113 16 14 6.5059 11.0462 -4.9161 17 1 7.5522 10.6373 -5.8875 18 1 6.0132 12.4038 -5.2616 19 1 7.0806 11.0617 -3.5469 20 6 4.8636 5.4369 -3.4870 21 7 4.8783 4.7296 -2.3864 22 6 1.9211 3.6048 -0.0001 23 6 1.2915 2.3752 0.0042 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 4.0209 0.3800 -0.0014 28 1 5.1345 2.5750 -0.0108 29 1 3.3600 5.7474 0.5041 30 1 4.9459 4.9394 0.4996 31 1 3.2454 7.3974 -1.4256 32 1 3.8688 7.3298 -5.2202 33 1 3.0158 8.2585 -3.9639 34 1 4.0849 10.8161 -6.3878 35 1 5.3021 5.1486 -4.4310 36 1 1.3342 4.5115 -0.0001 37 1 0.2129 2.3202 0.0080 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250054435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:15 Heat of formation + Delta-G solvation = 41.853944 kcal Electronic energy + Delta-G solvation = -19415.393850 eV Core-core repulsion = 16351.932050 eV Total energy + Delta-G solvation = -3063.461799 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.94427 -41.04051 -38.66054 -35.54480 -34.45506 -32.26710 -32.05126 -31.28154 -28.88697 -28.17123 -26.50036 -24.60619 -23.69277 -22.69096 -21.36963 -20.80508 -19.13893 -18.41775 -17.66946 -17.26596 -16.70058 -16.63155 -16.40823 -15.63536 -15.40689 -14.88340 -14.68452 -14.46950 -14.30818 -14.10629 -13.90836 -13.52605 -13.10759 -13.02157 -12.92192 -12.69919 -12.54457 -12.44648 -12.00876 -11.85353 -11.73524 -11.46750 -11.18400 -10.51209 -10.13397 -9.98872 -9.22228 -8.98851 -8.09672 -6.22721 0.26045 0.36431 1.13212 1.43173 1.44165 1.55055 1.87283 2.11480 2.33605 2.49243 2.81141 3.18986 3.59146 3.78972 3.88333 3.99361 4.20856 4.24949 4.33429 4.36528 4.37774 4.52738 4.56062 4.70528 4.71411 4.89568 4.94173 5.04379 5.21519 5.25717 5.31682 5.46253 5.58367 5.74899 5.81337 5.85157 5.92414 6.29838 6.38555 6.39986 6.90497 6.94345 7.45279 8.97740 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.040872 B = 0.003180 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.893542 B = 8803.325745 C = 9015.603954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.122 3.878 4 C -0.170 4.170 5 C -0.052 4.052 6 C -0.151 4.151 7 C 0.175 3.825 8 N -0.370 5.370 9 C 0.042 3.958 10 C -0.219 4.219 11 C 0.097 3.903 12 C -0.520 4.520 13 H 0.050 0.950 14 C 0.003 3.997 15 N -0.932 5.932 16 Si 0.961 3.039 17 H -0.275 1.275 18 H -0.280 1.280 19 H -0.267 1.267 20 C 0.030 3.970 21 N -0.313 5.313 22 C -0.066 4.066 23 C -0.216 4.216 24 H 0.059 0.941 25 H 0.120 0.880 26 H 0.068 0.932 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.099 0.901 31 H 0.190 0.810 32 H -0.003 1.003 33 H 0.002 0.998 34 H 0.263 0.737 35 H 0.179 0.821 36 H 0.140 0.860 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.783 -16.519 16.131 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.076 3.924 4 C -0.188 4.188 5 C -0.071 4.071 6 C -0.152 4.152 7 C 0.056 3.944 8 N -0.154 5.154 9 C -0.103 4.103 10 C -0.230 4.230 11 C 0.059 3.941 12 C -0.559 4.559 13 H 0.068 0.932 14 C -0.195 4.195 15 N -0.573 5.573 16 Si 0.786 3.214 17 H -0.201 1.201 18 H -0.206 1.206 19 H -0.192 1.192 20 C -0.155 4.155 21 N -0.135 5.135 22 C -0.085 4.085 23 C -0.234 4.234 24 H 0.078 0.922 25 H 0.138 0.862 26 H 0.086 0.914 27 H 0.156 0.844 28 H 0.153 0.847 29 H 0.148 0.852 30 H 0.117 0.883 31 H 0.207 0.793 32 H 0.016 0.984 33 H 0.021 0.979 34 H 0.072 0.928 35 H 0.196 0.804 36 H 0.158 0.842 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.419 -17.724 16.722 25.198 hybrid contribution 0.128 1.623 -0.940 1.880 sum -6.291 -16.100 15.782 23.407 Atomic orbital electron populations 1.23349 0.76430 1.05639 1.02215 1.86046 1.23518 1.26811 1.88532 1.19268 0.92660 0.84747 0.95690 1.20608 0.91839 0.99032 1.07362 1.20989 1.00392 0.90951 0.94763 1.19855 0.94092 0.94798 1.06440 1.20767 1.02271 0.94375 0.76967 1.48742 1.43164 1.13290 1.10163 1.22469 1.02443 0.91064 0.94276 1.20604 1.07639 0.98342 0.96432 1.17324 0.95325 0.90016 0.91468 1.21482 1.06190 1.07209 1.20977 0.93189 1.25880 0.98639 0.99902 0.95030 1.70079 1.32912 1.29433 1.24881 0.85513 0.79232 0.78032 0.78637 1.20107 1.20592 1.19152 1.23846 1.00322 0.93547 0.97783 1.77081 1.18555 1.20687 0.97203 1.21103 0.93773 0.98121 0.95457 1.21430 1.01134 0.91822 1.09055 0.92227 0.86172 0.91367 0.84391 0.84724 0.85223 0.88261 0.79349 0.98448 0.97924 0.92780 0.80417 0.84189 0.83374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.88 10.50 -92.47 -0.97 -7.85 16 3 C 0.12 2.74 6.69 22.51 0.15 2.89 16 4 C -0.17 -3.89 9.99 22.37 0.22 -3.67 16 5 C -0.05 -1.22 9.69 22.25 0.22 -1.00 16 6 C -0.15 -3.46 5.32 -19.85 -0.11 -3.57 16 7 C 0.18 3.94 6.63 85.64 0.57 4.50 16 8 N -0.37 -12.09 3.67 -351.80 -1.29 -13.38 16 9 C 0.04 1.55 11.36 83.54 0.95 2.50 16 10 C -0.22 -9.82 5.29 -20.15 -0.11 -9.93 16 11 C 0.10 5.21 5.46 29.10 0.16 5.37 16 12 C -0.52 -29.86 9.09 25.60 0.23 -29.62 16 13 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 14 C 0.00 0.17 5.46 84.66 0.46 0.63 16 15 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 16 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 C 0.03 1.25 11.96 85.24 1.02 2.27 16 21 N -0.31 -11.96 12.41 -57.02 -0.71 -12.66 16 22 C -0.07 -1.40 9.69 22.25 0.22 -1.18 16 23 C -0.22 -4.37 9.04 22.36 0.20 -4.16 16 24 H 0.06 0.67 7.67 -2.39 -0.02 0.65 16 25 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 0.63 7.65 -2.39 -0.02 0.61 16 27 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 28 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 29 H 0.13 2.08 8.01 -2.38 -0.02 2.06 16 30 H 0.10 1.97 8.08 -2.39 -0.02 1.95 16 31 H 0.19 5.81 8.06 -2.91 -0.02 5.78 16 32 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 34 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 35 H 0.18 6.93 8.06 -2.91 -0.02 6.91 16 36 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 37 H 0.15 2.24 6.30 -2.91 -0.02 2.22 16 Total: -1.00 -71.60 324.69 5.70 -65.90 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 1.06 Total: 11.15 kcal Atomic # 6 Polarization: -38.94 SS G_CDS: 5.30 Total: -33.64 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -1.71 Total: -82.17 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.97 Total: -7.85 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -71.60 5.70 -65.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250054435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.751 kcal (2) G-P(sol) polarization free energy of solvation -71.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds