Wall clock time and date at job start Mon Mar 30 2020 02:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30839 * 1 3 3 Si 1.86801 * 120.00428 * 2 1 4 4 H 1.48502 * 109.47131 * 239.99890 * 3 2 1 5 5 H 1.48497 * 109.47176 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47049 * 120.00298 * 3 2 1 7 7 C 1.39957 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99850 * 162.18201 * 7 2 1 9 9 C 1.41015 * 119.99765 * 341.90536 * 7 2 1 10 10 C 1.40934 * 120.11821 * 335.27468 * 9 7 2 11 11 C 1.36227 * 119.88208 * 179.78457 * 10 9 7 12 12 C 1.39963 * 120.11644 * 0.49610 * 11 10 9 13 13 C 1.47978 * 119.88279 * 179.71792 * 12 11 10 14 14 C 1.36908 * 126.95461 * 0.02562 * 13 12 11 15 15 N 1.35085 * 106.00057 * 180.02562 * 14 13 12 16 16 C 1.46501 * 125.71423 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47357 * 124.99919 * 16 15 14 18 18 C 1.52998 * 109.47530 * 180.02562 * 17 16 15 19 19 N 1.46898 * 109.47140 * 179.97438 * 18 17 16 20 20 N 1.28629 * 108.57554 * 0.02562 * 15 14 13 21 21 N 1.28604 * 110.58664 * 359.71757 * 20 15 14 22 22 C 1.39959 * 120.23236 * 359.73407 * 12 11 10 23 23 C 1.36229 * 120.12150 * 0.02562 * 22 12 11 24 24 H 0.97002 * 119.99285 * 359.97438 * 1 2 3 25 25 H 1.08008 * 120.06370 * 0.02641 * 10 9 7 26 26 H 1.08001 * 119.94392 * 180.23462 * 11 10 9 27 27 H 1.08000 * 127.00192 * 359.97438 * 14 13 12 28 28 H 1.08993 * 109.47318 * 245.00288 * 16 15 14 29 29 H 1.09006 * 109.46855 * 5.00196 * 16 15 14 30 30 H 1.09004 * 109.47047 * 300.00862 * 17 16 15 31 31 H 1.09004 * 109.47293 * 59.99931 * 17 16 15 32 32 H 1.08993 * 109.47144 * 300.00368 * 18 17 16 33 33 H 1.09006 * 109.46856 * 60.00170 * 18 17 16 34 34 H 1.00894 * 111.00059 * 179.97438 * 19 18 17 35 35 H 1.00893 * 111.00531 * 303.95854 * 19 18 17 36 36 H 1.08003 * 119.93780 * 179.97438 * 22 12 11 37 37 H 1.07998 * 120.05649 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0963 1.6963 -1.2125 5 1 1.2776 2.7464 0.0006 6 1 3.0963 1.6962 1.2125 7 6 2.0081 -1.2121 -0.0005 8 1 3.0492 -1.2344 -0.2867 9 6 1.3552 -2.4032 0.3782 10 6 0.2298 -2.3543 1.2251 11 6 -0.3999 -3.5076 1.5844 12 6 0.0752 -4.7404 1.1225 13 6 -0.6091 -5.9905 1.5212 14 6 -1.7089 -6.1054 2.3283 15 7 -1.9743 -7.4274 2.4101 16 6 -3.0691 -8.0344 3.1711 17 6 -3.9093 -8.9139 2.2429 18 6 -5.0530 -9.5473 3.0375 19 7 -5.8600 -10.3912 2.1461 20 7 -1.1041 -8.0642 1.7087 21 7 -0.2785 -7.2449 1.1599 22 6 1.1954 -4.7951 0.2852 23 6 1.8295 -3.6473 -0.0841 24 1 -0.4849 0.8401 0.0004 25 1 -0.1353 -1.4038 1.5855 26 1 -1.2648 -3.4709 2.2303 27 1 -2.2531 -5.3027 2.8035 28 1 -2.6580 -8.6441 3.9756 29 1 -3.6963 -7.2496 3.5941 30 1 -4.3203 -8.3041 1.4383 31 1 -3.2821 -9.6986 1.8198 32 1 -4.6423 -10.1569 3.8423 33 1 -5.6801 -8.7623 3.4602 34 1 -6.6223 -10.8216 2.6478 35 1 -6.1991 -9.8625 1.3566 36 1 1.5582 -5.7490 -0.0681 37 1 2.6940 -3.6907 -0.7299 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254149299.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:41 Heat of formation + Delta-G solvation = 82.191621 kcal Electronic energy + Delta-G solvation = -19274.340921 eV Core-core repulsion = 16244.921046 eV Total energy + Delta-G solvation = -3029.419875 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.00446 -39.40151 -37.47460 -35.81863 -35.00664 -33.00774 -31.57035 -31.21923 -30.49904 -27.20693 -26.46661 -23.88379 -23.44893 -22.62270 -21.74532 -21.29254 -19.26072 -18.42485 -17.40060 -17.12332 -16.94414 -16.33354 -16.00166 -15.85886 -15.49852 -15.14432 -14.80652 -14.39818 -13.88083 -13.76622 -13.74009 -13.27611 -13.12356 -12.90721 -12.72728 -12.68636 -12.47963 -12.18500 -12.01283 -11.78342 -11.58165 -11.20894 -11.17862 -10.90942 -10.44242 -9.63161 -9.45909 -8.93555 -8.66833 -6.31749 0.46129 0.85271 1.21340 1.40263 1.45088 1.53048 1.54427 2.00168 2.21484 2.81509 3.38387 3.51168 3.76535 3.79017 3.95169 4.11977 4.13393 4.32377 4.34129 4.36097 4.50148 4.54977 4.65799 4.73846 4.96452 5.04011 5.13891 5.14756 5.24589 5.35453 5.43521 5.70808 5.79147 6.00867 6.08248 6.20551 6.20986 6.34263 6.56214 6.64566 6.89097 7.00065 7.62948 8.27457 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.041412 B = 0.003093 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.964695 B = 9051.230555 C = 9490.116834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.037 3.963 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.487 4.487 8 H 0.078 0.922 9 C 0.090 3.910 10 C -0.190 4.190 11 C -0.069 4.069 12 C -0.162 4.162 13 C 0.041 3.959 14 C -0.058 4.058 15 N -0.278 5.278 16 C 0.110 3.890 17 C -0.126 4.126 18 C 0.071 3.929 19 N -0.867 5.867 20 N -0.115 5.115 21 N -0.318 5.318 22 C -0.062 4.062 23 C -0.248 4.248 24 H 0.293 0.707 25 H 0.112 0.888 26 H 0.125 0.875 27 H 0.223 0.777 28 H 0.116 0.884 29 H 0.140 0.860 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.355 0.645 35 H 0.345 0.655 36 H 0.100 0.900 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.744 -8.659 9.184 17.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.516 4.516 8 H 0.096 0.904 9 C 0.087 3.913 10 C -0.210 4.210 11 C -0.088 4.088 12 C -0.166 4.166 13 C -0.095 4.095 14 C -0.208 4.208 15 N -0.074 5.074 16 C -0.009 4.009 17 C -0.165 4.165 18 C -0.060 4.060 19 N -0.399 5.399 20 N -0.093 5.093 21 N -0.184 5.184 22 C -0.081 4.081 23 C -0.268 4.268 24 H 0.104 0.896 25 H 0.130 0.870 26 H 0.143 0.857 27 H 0.239 0.761 28 H 0.134 0.866 29 H 0.158 0.842 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.070 0.930 34 H 0.169 0.831 35 H 0.158 0.842 36 H 0.118 0.882 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.861 -10.401 8.625 17.979 hybrid contribution -0.599 2.204 0.152 2.289 sum -12.460 -8.196 8.777 17.305 Atomic orbital electron populations 1.69860 1.08985 1.31102 1.33617 1.26812 0.95556 1.04556 0.91029 0.85213 0.78836 0.75375 0.80098 1.18533 1.18838 1.18382 1.19864 0.98574 0.92522 1.40601 0.90368 1.18059 0.91800 0.92723 0.88737 1.20966 1.00295 0.97353 1.02359 1.20599 0.98593 0.90980 0.98660 1.17320 1.00828 0.89025 1.09413 1.20723 0.96757 0.92186 0.99866 1.23894 1.01944 0.87779 1.07175 1.47420 1.21951 1.05355 1.32628 1.22481 0.84948 0.99873 0.93617 1.21765 0.97499 0.98829 0.98366 1.21629 0.93666 0.95840 0.94870 1.58606 1.29877 1.38148 1.13268 1.77948 0.99997 1.22319 1.09047 1.75235 1.21089 1.00567 1.21496 1.20501 0.94746 0.96786 0.96083 1.20832 1.04872 0.93031 1.08033 0.89635 0.87030 0.85702 0.76058 0.86596 0.84158 0.92217 0.91859 0.89746 0.93039 0.83098 0.84240 0.88200 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.57 10.97 21.83 0.24 -40.33 16 2 C 0.04 1.82 5.13 85.26 0.44 2.26 16 3 Si 0.98 36.68 29.60 68.60 2.03 38.71 16 4 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 5 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 6 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.49 -25.91 9.03 23.37 0.21 -25.70 16 8 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 9 C 0.09 4.87 5.57 -21.28 -0.12 4.75 16 10 C -0.19 -9.73 8.63 22.46 0.19 -9.54 16 11 C -0.07 -3.10 9.51 22.22 0.21 -2.89 16 12 C -0.16 -7.52 5.90 -19.86 -0.12 -7.64 16 13 C 0.04 1.69 6.98 40.98 0.29 1.97 16 14 C -0.06 -1.75 10.96 83.88 0.92 -0.83 16 15 N -0.28 -7.67 3.43 -346.61 -1.19 -8.85 16 16 C 0.11 1.63 6.44 86.38 0.56 2.19 16 17 C -0.13 -1.96 5.60 30.59 0.17 -1.79 16 18 C 0.07 0.72 6.79 86.30 0.59 1.30 16 19 N -0.87 -10.06 9.62 -186.72 -1.80 -11.86 16 20 N -0.11 -4.18 12.87 37.02 0.48 -3.70 16 21 N -0.32 -13.70 12.15 -49.33 -0.60 -14.30 16 22 C -0.06 -3.06 9.64 22.22 0.21 -2.85 16 23 C -0.25 -12.88 9.73 22.46 0.22 -12.66 16 24 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 25 H 0.11 5.79 6.17 -2.91 -0.02 5.77 16 26 H 0.13 4.54 7.09 -2.91 -0.02 4.52 16 27 H 0.22 4.80 7.39 -2.91 -0.02 4.78 16 28 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.14 1.05 8.06 -2.38 -0.02 1.03 16 30 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.06 1.36 8.11 -2.38 -0.02 1.34 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.35 2.69 9.08 -89.70 -0.81 1.88 16 35 H 0.34 3.70 8.99 -89.70 -0.81 2.89 16 36 H 0.10 4.77 7.88 -2.91 -0.02 4.74 16 37 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -68.80 319.47 2.42 -66.38 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: -0.51 Total: 25.37 kcal Atomic # 6 Polarization: -55.19 SS G_CDS: 3.77 Total: -51.42 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -2.87 Total: -79.04 kcal Atomic # 14 Polarization: 36.68 SS G_CDS: 2.03 Total: 38.71 kcal Total: -68.80 2.42 -66.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254149299.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.575 kcal (2) G-P(sol) polarization free energy of solvation -68.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds