Wall clock time and date at job start Mon Mar 30 2020 01:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39711 * 119.99387 * 277.13705 * 3 2 1 5 5 C 1.37605 * 120.00484 * 180.02562 * 4 3 2 6 6 C 1.39750 * 119.99238 * 0.02562 * 5 4 3 7 7 C 1.47686 * 119.99956 * 180.02562 * 6 5 4 8 8 O 1.21565 * 120.00120 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99721 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47551 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47115 * 65.00068 * 11 10 9 13 13 C 1.53003 * 109.47495 * 184.99999 * 11 10 9 14 14 N 1.46499 * 109.47066 * 305.00566 * 11 10 9 15 15 C 1.36938 * 120.00054 * 155.00265 * 14 11 10 16 16 H 1.08003 * 120.00114 * 359.97438 * 15 14 11 17 17 C 1.38815 * 120.00272 * 180.02562 * 15 14 11 18 18 N 1.31610 * 120.00434 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99525 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46993 * 90.00289 * 19 17 15 21 21 H 1.48502 * 109.46766 * 210.00462 * 19 17 15 22 22 H 1.48501 * 109.47337 * 330.00062 * 19 17 15 23 23 C 1.39743 * 119.99220 * 0.27534 * 6 5 4 24 24 C 1.37599 * 119.99493 * 359.44080 * 23 6 5 25 25 H 4.51940 * 14.06521 * 0.02562 * 4 2 1 26 26 H 1.08002 * 119.99805 * 0.02562 * 4 3 2 27 27 H 1.07995 * 120.00492 * 179.97438 * 5 4 3 28 28 H 0.96999 * 120.00047 * 0.02562 * 9 7 6 29 29 H 1.09000 * 109.47024 * 300.00478 * 10 9 7 30 30 H 1.09004 * 109.46875 * 60.00324 * 10 9 7 31 31 H 1.08998 * 109.46914 * 179.97438 * 13 11 10 32 32 H 1.08994 * 109.47229 * 300.00382 * 13 11 10 33 33 H 1.08998 * 109.46376 * 59.99941 * 13 11 10 34 34 H 0.96999 * 120.00202 * 334.99029 * 14 11 10 35 35 H 0.96996 * 120.00842 * 179.97438 * 18 17 15 36 36 H 1.07993 * 120.00228 * 179.72591 * 23 6 5 37 37 H 1.08004 * 119.99536 * 180.25468 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3046 -0.1494 1.2006 5 6 4.6806 -0.1483 1.2010 6 6 5.3794 0.0035 0.0002 7 6 6.8562 0.0041 0.0003 8 8 7.4641 -0.1269 1.0449 9 7 7.5301 0.1500 -1.1577 10 6 8.9950 0.1512 -1.1577 11 6 9.5050 0.3318 -2.5888 12 1 9.2159 1.3165 -2.9560 13 6 11.0299 0.2085 -2.6063 14 7 8.9217 -0.7007 -3.4490 15 6 8.7931 -0.4789 -4.7942 16 1 9.1213 0.4574 -5.2209 17 6 8.2399 -1.4569 -5.6092 18 7 8.1158 -1.2436 -6.9020 19 14 7.6715 -3.0761 -4.8710 20 1 6.2481 -2.9617 -4.4636 21 1 7.8124 -4.1566 -5.8799 22 1 8.5022 -3.3971 -3.6827 23 6 4.6805 0.1598 -1.1997 24 6 3.3045 0.1528 -1.2004 25 1 -1.0499 -0.0005 0.0001 26 1 2.7645 -0.2662 2.1286 27 1 5.2205 -0.2638 2.1291 28 1 7.0450 0.2549 -1.9912 29 1 9.3576 0.9706 -0.5370 30 1 9.3591 -0.7956 -0.7587 31 1 11.3931 0.3368 -3.6259 32 1 11.4639 0.9767 -1.9663 33 1 11.3190 -0.7762 -2.2391 34 1 8.6267 -1.5415 -3.0658 35 1 7.7296 -1.9271 -7.4716 36 1 5.2203 0.2815 -2.1271 37 1 2.7644 0.2695 -2.1283 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265806885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:58 Heat of formation + Delta-G solvation = 33.009504 kcal Electronic energy + Delta-G solvation = -19702.322376 eV Core-core repulsion = 16638.477053 eV Total energy + Delta-G solvation = -3063.845323 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.31006 -39.60730 -38.04339 -35.36554 -34.82608 -33.78981 -32.12193 -31.62919 -30.96975 -27.51099 -25.54989 -24.87906 -23.58972 -21.84416 -21.63288 -20.00736 -19.89464 -18.75476 -17.37594 -17.03758 -16.60139 -16.19584 -16.15150 -15.81772 -15.56790 -15.02238 -14.71025 -14.56001 -14.32132 -14.15160 -13.79193 -13.45145 -13.30324 -13.26996 -12.87177 -12.50404 -12.43771 -12.15939 -12.13178 -11.80200 -11.71629 -11.46744 -11.13666 -10.99650 -10.18001 -10.13494 -9.61487 -9.35223 -8.00611 -5.34245 -0.56463 0.28082 1.38353 1.40070 1.45105 1.46546 1.73797 2.14305 2.25612 2.47945 2.94526 3.25427 3.31369 3.54364 3.69316 3.77027 3.86653 3.93704 4.22352 4.32635 4.40309 4.52446 4.60209 4.71097 4.79617 4.90085 4.92944 5.01368 5.20822 5.23437 5.28395 5.31542 5.34226 5.55454 5.73119 5.81038 6.22632 6.47144 6.53227 7.08083 7.10345 7.83235 8.01853 9.20579 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015651 B = 0.005113 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.570543 B = 5475.274859 C = 6773.410355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.209 4.209 3 C 0.030 3.970 4 C -0.104 4.104 5 C -0.062 4.062 6 C -0.143 4.143 7 C 0.554 3.446 8 O -0.576 6.576 9 N -0.711 5.711 10 C 0.119 3.881 11 C 0.162 3.838 12 H 0.062 0.938 13 C -0.157 4.157 14 N -0.749 5.749 15 C -0.223 4.223 16 H 0.064 0.936 17 C -0.053 4.053 18 N -0.980 5.980 19 Si 0.941 3.059 20 H -0.274 1.274 21 H -0.301 1.301 22 H -0.261 1.261 23 C -0.084 4.084 24 C -0.110 4.110 25 H 0.264 0.736 26 H 0.156 0.844 27 H 0.144 0.856 28 H 0.410 0.590 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.363 0.637 35 H 0.256 0.744 36 H 0.138 0.862 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.711 3.482 16.456 20.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.209 4.209 3 C 0.029 3.971 4 C -0.122 4.122 5 C -0.080 4.080 6 C -0.146 4.146 7 C 0.342 3.658 8 O -0.458 6.458 9 N -0.362 5.362 10 C -0.005 4.005 11 C 0.055 3.945 12 H 0.080 0.920 13 C -0.217 4.217 14 N -0.394 5.394 15 C -0.354 4.354 16 H 0.082 0.918 17 C -0.245 4.245 18 N -0.631 5.631 19 Si 0.769 3.231 20 H -0.200 1.200 21 H -0.229 1.229 22 H -0.187 1.187 23 C -0.103 4.103 24 C -0.128 4.128 25 H 0.280 0.720 26 H 0.173 0.827 27 H 0.162 0.838 28 H 0.248 0.752 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.196 0.804 35 H 0.066 0.934 36 H 0.156 0.844 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.214 3.520 16.970 20.643 hybrid contribution -0.384 -1.098 -0.743 1.381 sum -11.598 2.421 16.227 20.092 Atomic orbital electron populations 1.25873 0.96502 0.95723 0.96533 1.20273 0.92473 1.04173 1.03968 1.16386 0.87665 0.99042 0.93987 1.21374 0.93212 0.99521 0.98094 1.21277 0.93962 0.95263 0.97545 1.20078 0.92171 1.06781 0.95548 1.18496 0.87816 0.76052 0.83424 1.90718 1.70639 1.51997 1.32399 1.45991 1.08106 1.72378 1.09766 1.21701 0.79009 1.02581 0.97189 1.20671 0.93145 0.92679 0.88049 0.91972 1.22217 0.96200 1.01832 1.01421 1.42848 1.75177 1.16973 1.04358 1.18998 1.32124 1.00690 0.83548 0.91782 1.25304 1.02407 1.01307 0.95476 1.69847 1.52618 1.35868 1.04750 0.85634 0.78994 0.80789 0.77672 1.20019 1.22864 1.18662 1.21423 0.94703 0.96767 0.97400 1.21344 0.93537 0.99640 0.98239 0.72034 0.82661 0.83809 0.75199 0.89368 0.91911 0.93924 0.90457 0.93090 0.80370 0.93450 0.84432 0.83661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 19.25 74.32 1.43 -0.36 16 2 C -0.21 -4.14 13.23 30.02 0.40 -3.74 16 3 C 0.03 0.66 5.73 -21.32 -0.12 0.53 16 4 C -0.10 -2.15 9.73 22.48 0.22 -1.93 16 5 C -0.06 -1.47 9.58 22.49 0.22 -1.26 16 6 C -0.14 -3.91 5.88 -20.05 -0.12 -4.03 16 7 C 0.55 17.50 7.77 86.74 0.67 18.17 16 8 O -0.58 -21.00 16.33 -3.92 -0.06 -21.06 16 9 N -0.71 -21.73 5.34 -466.15 -2.49 -24.22 16 10 C 0.12 3.57 5.23 86.38 0.45 4.03 16 11 C 0.16 5.50 3.05 44.99 0.14 5.63 16 12 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 13 C -0.16 -4.83 9.49 71.98 0.68 -4.15 16 14 N -0.75 -31.85 4.37 -322.94 -1.41 -33.26 16 15 C -0.22 -11.73 10.41 84.03 0.87 -10.85 16 16 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 17 C -0.05 -2.97 5.50 84.86 0.47 -2.50 16 18 N -0.98 -60.39 13.97 21.65 0.30 -60.09 16 19 Si 0.94 44.03 27.74 68.60 1.90 45.94 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 22 H -0.26 -11.41 6.52 99.48 0.65 -10.76 16 23 C -0.08 -2.13 9.52 22.48 0.21 -1.92 16 24 C -0.11 -2.53 9.73 22.47 0.22 -2.31 16 25 H 0.26 1.07 7.80 -4.42 -0.03 1.04 16 26 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 27 H 0.14 3.28 7.64 -2.91 -0.02 3.26 16 28 H 0.41 12.47 6.15 -92.71 -0.57 11.90 16 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.36 15.40 5.66 -92.71 -0.52 14.88 16 35 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.14 3.39 6.38 -2.91 -0.02 3.37 16 37 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -68.55 327.48 3.92 -64.63 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: -0.07 Total: 32.75 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 5.74 Total: -4.68 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -3.60 Total: -117.57 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.06 Total: -21.06 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.90 Total: 45.94 kcal Total: -68.55 3.92 -64.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265806885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.636 kcal (2) G-P(sol) polarization free energy of solvation -68.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds