Wall clock time and date at job start Mon Mar 30 2020 01:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39715 * 119.99177 * 272.63959 * 3 2 1 5 5 C 1.37609 * 119.99921 * 179.72076 * 4 3 2 6 6 C 1.39742 * 119.99576 * 0.57784 * 5 4 3 7 7 C 1.47685 * 120.00571 * 179.67392 * 6 5 4 8 8 O 1.21575 * 119.99898 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99726 * 0.02562 * 7 6 5 10 10 C 1.46505 * 119.99571 * 179.97438 * 9 7 6 11 11 C 1.53008 * 109.46689 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.46582 * 294.99731 * 11 10 9 13 13 C 1.52995 * 109.46735 * 175.00083 * 11 10 9 14 14 N 1.46494 * 109.47162 * 54.99831 * 11 10 9 15 15 C 1.36937 * 120.00301 * 204.99993 * 14 11 10 16 16 H 1.08003 * 119.99438 * 0.02562 * 15 14 11 17 17 C 1.38812 * 120.00165 * 180.02562 * 15 14 11 18 18 N 1.31611 * 120.00196 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99797 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47113 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46867 * 119.99836 * 19 17 15 22 22 H 1.48498 * 109.46990 * 239.99855 * 19 17 15 23 23 C 1.39748 * 119.99057 * 359.69664 * 6 5 4 24 24 C 1.37594 * 119.99835 * 0.02562 * 23 6 5 25 25 H 4.51939 * 14.06589 * 359.97438 * 4 2 1 26 26 H 1.07995 * 120.00261 * 359.97438 * 4 3 2 27 27 H 1.07994 * 120.00264 * 180.24852 * 5 4 3 28 28 H 0.96997 * 119.99920 * 359.97438 * 9 7 6 29 29 H 1.08995 * 109.47378 * 299.99551 * 10 9 7 30 30 H 1.09003 * 109.46744 * 60.00137 * 10 9 7 31 31 H 1.09003 * 109.47351 * 60.00136 * 13 11 10 32 32 H 1.09005 * 109.46756 * 180.02562 * 13 11 10 33 33 H 1.09000 * 109.47316 * 299.99966 * 13 11 10 34 34 H 0.97010 * 120.00038 * 25.00114 * 14 11 10 35 35 H 0.96995 * 120.00183 * 180.02562 * 18 17 15 36 36 H 1.08000 * 119.99942 * 180.02562 * 23 6 5 37 37 H 1.08004 * 119.99739 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3044 -0.0548 1.2088 5 6 4.6805 -0.0600 1.2087 6 6 5.3793 0.0024 0.0002 7 6 6.8561 0.0041 0.0002 8 8 7.4639 0.0588 -1.0513 9 7 7.5300 -0.0550 1.1659 10 6 8.9950 -0.0539 1.1659 11 6 9.5051 -0.1265 2.6066 12 1 9.2160 0.7789 3.1404 13 6 11.0299 -0.2510 2.6021 14 7 8.9218 -1.2936 3.2729 15 6 8.7931 -1.3106 4.6361 16 1 9.1214 -0.4634 5.2200 17 6 8.2409 -2.4166 5.2674 18 7 7.8405 -3.4488 4.5557 19 14 8.0661 -2.4400 7.1271 20 1 8.5867 -1.1680 7.6892 21 1 6.6334 -2.5903 7.4877 22 1 8.8386 -3.5802 7.6825 23 6 4.6804 0.0636 -1.2085 24 6 3.3045 0.0630 -1.2083 25 1 -1.0500 0.0005 0.0001 26 1 2.7644 -0.0977 2.1430 27 1 5.2204 -0.1069 2.1428 28 1 7.0450 -0.0983 2.0048 29 1 9.3591 -0.9162 0.6074 30 1 9.3576 0.8615 0.6982 31 1 11.4639 0.6174 2.1064 32 1 11.3932 -0.3032 3.6285 33 1 11.3190 -1.1563 2.0682 34 1 8.6266 -2.0544 2.7483 35 1 7.4543 -4.2215 4.9968 36 1 5.2203 0.1114 -2.1426 37 1 2.7644 0.1107 -2.1424 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265806886.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:00 Heat of formation + Delta-G solvation = 30.193543 kcal Electronic energy + Delta-G solvation = -19606.095999 eV Core-core repulsion = 16542.128566 eV Total energy + Delta-G solvation = -3063.967432 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.26940 -39.56604 -37.89484 -35.30941 -34.80438 -33.66685 -32.07156 -31.47231 -30.47528 -27.48256 -25.76859 -24.93645 -23.57049 -21.76634 -21.56696 -19.95496 -19.44837 -18.71903 -17.35673 -16.91393 -16.56693 -16.25341 -15.98325 -15.79011 -15.48876 -15.16129 -14.73145 -14.44327 -14.19933 -13.83781 -13.66272 -13.41058 -13.27657 -13.06890 -12.81184 -12.50416 -12.41406 -12.14008 -12.11964 -11.70950 -11.64850 -11.44915 -11.10837 -10.95369 -10.13330 -10.10761 -9.58613 -9.02321 -7.90838 -5.20178 -0.53710 0.30646 1.47896 1.49746 1.51706 1.60153 1.75593 2.18644 2.29191 2.58327 2.96950 3.27462 3.43664 3.70884 3.79616 3.88454 3.90293 4.00035 4.24890 4.38943 4.42931 4.54624 4.64123 4.73611 4.82892 4.92665 4.94916 5.07341 5.24026 5.26053 5.30397 5.33601 5.38541 5.57900 5.58698 5.75543 6.29660 6.52135 6.54951 7.14048 7.37237 8.08980 8.33773 9.32006 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014915 B = 0.004793 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.851940 B = 5840.519954 C = 7440.597970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.208 4.208 3 C 0.029 3.971 4 C -0.109 4.109 5 C -0.081 4.081 6 C -0.142 4.142 7 C 0.552 3.448 8 O -0.580 6.580 9 N -0.705 5.705 10 C 0.122 3.878 11 C 0.159 3.841 12 H 0.061 0.939 13 C -0.155 4.155 14 N -0.733 5.733 15 C -0.234 4.234 16 H 0.079 0.921 17 C -0.068 4.068 18 N -0.966 5.966 19 Si 0.965 3.035 20 H -0.266 1.266 21 H -0.295 1.295 22 H -0.301 1.301 23 C -0.063 4.063 24 C -0.105 4.105 25 H 0.264 0.736 26 H 0.146 0.854 27 H 0.136 0.864 28 H 0.410 0.590 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.042 0.958 34 H 0.373 0.627 35 H 0.249 0.751 36 H 0.143 0.857 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.927 9.640 -8.777 17.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.208 4.208 3 C 0.029 3.971 4 C -0.126 4.126 5 C -0.100 4.100 6 C -0.145 4.145 7 C 0.340 3.660 8 O -0.463 6.463 9 N -0.356 5.356 10 C -0.003 4.003 11 C 0.050 3.950 12 H 0.079 0.921 13 C -0.215 4.215 14 N -0.374 5.374 15 C -0.365 4.365 16 H 0.097 0.903 17 C -0.261 4.261 18 N -0.617 5.617 19 Si 0.795 3.205 20 H -0.190 1.190 21 H -0.223 1.223 22 H -0.228 1.228 23 C -0.082 4.082 24 C -0.122 4.122 25 H 0.280 0.720 26 H 0.164 0.836 27 H 0.153 0.847 28 H 0.248 0.752 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.205 0.795 35 H 0.058 0.942 36 H 0.161 0.839 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -10.429 9.766 -9.296 17.046 hybrid contribution -0.213 -0.857 1.342 1.607 sum -10.642 8.909 -7.953 15.996 Atomic orbital electron populations 1.25866 0.96475 0.95749 0.96544 1.20254 0.92429 1.04156 1.03965 1.16380 0.87713 0.99171 0.93878 1.21330 0.93419 0.99638 0.98250 1.21394 0.94721 0.96505 0.97356 1.20074 0.92110 1.06831 0.95460 1.18543 0.87930 0.75977 0.83541 1.90706 1.70728 1.52665 1.32165 1.45937 1.08019 1.72715 1.08919 1.21654 0.79136 1.01924 0.97563 1.20697 0.93044 0.90932 0.90315 0.92070 1.22236 0.96636 1.01338 1.01329 1.42634 1.73550 1.17415 1.03804 1.19612 1.32009 1.00599 0.84324 0.90318 1.25427 1.02600 0.96633 1.01450 1.69818 1.49079 1.07379 1.35436 0.85195 0.76684 0.77317 0.81267 1.19022 1.22253 1.22842 1.21268 0.94036 0.95396 0.97505 1.21363 0.93124 0.99623 0.98117 0.71967 0.83601 0.84659 0.75213 0.92853 0.89720 0.90718 0.93557 0.93902 0.79547 0.94231 0.83936 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 19.25 74.32 1.43 -0.47 16 2 C -0.21 -4.35 13.23 30.02 0.40 -3.95 16 3 C 0.03 0.69 5.73 -21.32 -0.12 0.56 16 4 C -0.11 -2.69 9.73 22.48 0.22 -2.47 16 5 C -0.08 -2.24 9.52 22.48 0.21 -2.03 16 6 C -0.14 -4.26 5.88 -20.05 -0.12 -4.38 16 7 C 0.55 19.26 7.77 86.74 0.67 19.93 16 8 O -0.58 -23.09 16.33 -3.95 -0.06 -23.15 16 9 N -0.71 -23.99 5.34 -466.10 -2.49 -26.48 16 10 C 0.12 4.07 5.23 86.38 0.45 4.52 16 11 C 0.16 5.71 3.05 44.99 0.14 5.85 16 12 H 0.06 2.14 8.08 -2.38 -0.02 2.12 16 13 C -0.16 -5.06 9.49 71.98 0.68 -4.38 16 14 N -0.73 -33.87 4.56 -322.94 -1.47 -35.35 16 15 C -0.23 -11.97 9.93 84.03 0.83 -11.13 16 16 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 17 C -0.07 -3.71 5.50 84.86 0.47 -3.25 16 18 N -0.97 -56.70 13.06 21.65 0.28 -56.42 16 19 Si 0.97 44.16 29.55 68.60 2.03 46.19 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 23 C -0.06 -1.66 9.57 22.48 0.22 -1.44 16 24 C -0.10 -2.34 9.73 22.47 0.22 -2.12 16 25 H 0.26 1.24 7.80 -4.42 -0.03 1.20 16 26 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 27 H 0.14 3.73 6.38 -2.91 -0.02 3.71 16 28 H 0.41 13.98 6.15 -92.71 -0.57 13.41 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.37 19.10 7.80 -92.70 -0.72 18.38 16 35 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 36 H 0.14 3.60 7.64 -2.91 -0.02 3.57 16 37 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -65.81 330.60 3.78 -62.03 By element: Atomic # 1 Polarization: 38.14 SS G_CDS: -0.20 Total: 37.94 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 5.70 Total: -4.76 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -3.68 Total: -118.24 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.06 Total: -23.15 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -65.81 3.78 -62.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265806886.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.221 kcal (2) G-P(sol) polarization free energy of solvation -65.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds