Wall clock time and date at job start Mon Mar 30 2020 01:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39716 * 119.99525 * 78.08229 * 3 2 1 5 5 C 1.37603 * 120.00476 * 179.97438 * 4 3 2 6 6 C 1.39743 * 119.99390 * 0.02562 * 5 4 3 7 7 C 1.47684 * 120.00362 * 179.97438 * 6 5 4 8 8 O 1.21579 * 120.00006 * 359.97438 * 7 6 5 9 9 N 1.34784 * 120.00450 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00075 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47049 * 324.99133 * 10 9 7 12 12 C 1.52997 * 109.47188 * 85.00024 * 10 9 7 13 13 C 1.53006 * 109.46631 * 204.99770 * 10 9 7 14 14 N 1.46501 * 109.47084 * 55.00356 * 13 10 9 15 15 C 1.36935 * 119.99826 * 179.97438 * 14 13 10 16 16 H 1.08001 * 120.00278 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00042 * 179.97438 * 15 14 13 18 18 N 1.31619 * 120.00004 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00253 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46948 * 90.00189 * 19 17 15 21 21 H 1.48497 * 109.47019 * 210.00161 * 19 17 15 22 22 H 1.48494 * 109.46941 * 330.00403 * 19 17 15 23 23 C 1.39741 * 119.99361 * 0.27291 * 6 5 4 24 24 C 1.37599 * 119.99643 * 359.46602 * 23 6 5 25 25 H 4.51950 * 14.06471 * 359.97438 * 4 2 1 26 26 H 1.08004 * 119.99982 * 359.97438 * 4 3 2 27 27 H 1.08001 * 120.00176 * 179.97438 * 5 4 3 28 28 H 0.96996 * 119.99132 * 359.97438 * 9 7 6 29 29 H 1.09002 * 109.47153 * 299.99573 * 12 10 9 30 30 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 31 31 H 1.09004 * 109.47261 * 59.99745 * 12 10 9 32 32 H 1.08995 * 109.46750 * 174.99769 * 13 10 9 33 33 H 1.09001 * 109.47326 * 295.00148 * 13 10 9 34 34 H 0.96999 * 119.99782 * 359.97438 * 14 13 10 35 35 H 0.97009 * 120.00509 * 180.02562 * 18 17 15 36 36 H 1.08004 * 120.00614 * 179.72767 * 23 6 5 37 37 H 1.08002 * 119.99850 * 180.23214 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3046 -0.2489 -1.1840 5 6 4.6806 -0.2478 -1.1843 6 6 5.3793 0.0024 -0.0002 7 6 6.8561 0.0030 -0.0002 8 8 7.4641 -0.2146 -1.0303 9 7 7.5300 0.2449 1.1417 10 6 8.9950 0.2461 1.1415 11 1 9.3588 -0.5044 0.4398 12 6 9.5038 1.6264 0.7214 13 6 9.5053 -0.0797 2.5467 14 7 8.9223 -1.3461 2.9966 15 6 9.2366 -1.8436 4.2331 16 1 9.9147 -1.3025 4.8765 17 6 8.6838 -3.0432 4.6596 18 7 7.8578 -3.7029 3.8754 19 14 9.1132 -3.7223 6.3461 20 1 8.1460 -3.2067 7.3482 21 1 9.0489 -5.2055 6.3135 22 1 10.4858 -3.2943 6.7172 23 6 4.6804 0.2458 1.1852 24 6 3.3044 0.2500 1.1840 25 1 -1.0500 -0.0005 0.0000 26 1 2.7646 -0.4427 -2.0990 27 1 5.2206 -0.4412 -2.0994 28 1 7.0449 0.4189 1.9635 29 1 9.1402 1.8585 -0.2796 30 1 10.5938 1.6274 0.7217 31 1 9.1399 2.3769 1.4232 32 1 10.5917 -0.1664 2.5276 33 1 9.2164 0.7172 3.2321 34 1 8.3136 -1.8322 2.4186 35 1 7.4712 -4.5411 4.1736 36 1 5.2202 0.4349 2.1013 37 1 2.7643 0.4418 2.0994 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268697985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:52 Heat of formation + Delta-G solvation = 50.594215 kcal Electronic energy + Delta-G solvation = -19685.127724 eV Core-core repulsion = 16622.044931 eV Total energy + Delta-G solvation = -3063.082793 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.12457 -38.50952 -36.15101 -33.99498 -33.65648 -31.77381 -30.96287 -30.42610 -29.53179 -25.72299 -24.58521 -22.80124 -22.53856 -21.08285 -20.21101 -19.08220 -17.87955 -17.01306 -16.19152 -15.71598 -15.06498 -14.92063 -14.69821 -14.50339 -13.76248 -13.66199 -13.53609 -13.32966 -13.10307 -12.40550 -12.29421 -12.20151 -12.10003 -11.61709 -11.49684 -11.22392 -10.91288 -10.85062 -10.63012 -10.46522 -10.07160 -9.76143 -9.68857 -9.12233 -8.94085 -8.81581 -8.56540 -6.98245 -5.79465 -3.09813 0.48348 1.29415 2.52414 2.52842 3.33935 3.40873 3.44913 3.46884 3.48621 3.97879 4.03750 4.55536 4.75342 4.80590 4.89993 5.21960 5.27272 5.38680 5.40701 5.48231 5.52949 5.65012 5.78772 5.88846 6.00387 6.08569 6.16359 6.20981 6.27690 6.30125 6.39459 6.45801 6.68044 6.71644 6.92573 7.29948 7.66331 7.82929 8.37951 8.48577 9.49882 10.05594 10.41022 11.42635 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014820 B = 0.004721 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.906995 B = 5930.022488 C = 7347.530237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.147 4.147 3 C 0.025 3.975 4 C -0.106 4.106 5 C -0.061 4.061 6 C -0.117 4.117 7 C 0.557 3.443 8 O -0.544 6.544 9 N -0.704 5.704 10 C 0.133 3.867 11 H 0.088 0.912 12 C -0.157 4.157 13 C 0.144 3.856 14 N -0.732 5.732 15 C -0.245 4.245 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C -0.078 4.078 24 C -0.101 4.101 25 H 0.225 0.775 26 H 0.131 0.869 27 H 0.141 0.859 28 H 0.403 0.597 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.035 0.965 33 H 0.025 0.975 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.136 0.864 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.210 11.085 -7.925 17.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.147 4.147 3 C 0.024 3.976 4 C -0.124 4.124 5 C -0.080 4.080 6 C -0.120 4.120 7 C 0.344 3.656 8 O -0.423 6.423 9 N -0.355 5.355 10 C 0.028 3.972 11 H 0.107 0.893 12 C -0.216 4.216 13 C 0.016 3.984 14 N -0.377 5.377 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.207 4.207 18 N -0.578 5.578 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.097 4.097 24 C -0.119 4.119 25 H 0.241 0.759 26 H 0.149 0.851 27 H 0.159 0.841 28 H 0.239 0.761 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.154 0.846 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.642 10.900 -8.474 16.840 hybrid contribution -0.443 -0.631 1.282 1.496 sum -10.086 10.270 -7.192 16.091 Atomic orbital electron populations 1.24885 0.95747 0.99234 0.99421 1.20065 0.92041 1.01389 1.01238 1.16157 0.86608 1.00557 0.94239 1.21129 0.93774 1.00224 0.97278 1.21179 0.93310 0.95449 0.98020 1.20165 0.93475 1.03672 0.94668 1.18162 0.86848 0.76685 0.83877 1.90745 1.69794 1.49667 1.32134 1.45927 1.07642 1.70868 1.11044 1.21285 0.78899 0.97614 0.99388 0.89349 1.22103 1.01348 0.96687 1.01479 1.20995 0.96711 0.90044 0.90689 1.42369 1.55490 1.21682 1.18186 1.19212 1.22590 1.03170 0.92587 0.91126 1.24752 0.99816 0.97712 0.98436 1.69671 1.34547 1.17154 1.36421 0.86195 0.77870 0.78175 0.83948 1.21712 1.21767 1.20749 1.21321 0.94076 0.96803 0.97486 1.21121 0.93832 0.99702 0.97257 0.75870 0.85077 0.84110 0.76059 0.92374 0.91563 0.92552 0.94759 0.95767 0.77970 0.93451 0.84641 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 19.25 29.55 0.57 -1.02 16 2 C -0.15 -1.69 13.23 -38.84 -0.51 -2.20 16 3 C 0.02 0.31 5.73 -106.87 -0.61 -0.31 16 4 C -0.11 -1.26 9.73 -39.26 -0.38 -1.64 16 5 C -0.06 -0.81 9.57 -39.25 -0.38 -1.19 16 6 C -0.12 -1.72 5.88 -104.92 -0.62 -2.34 16 7 C 0.56 9.52 7.73 -12.40 -0.10 9.43 16 8 O -0.54 -10.74 15.99 5.30 0.08 -10.66 16 9 N -0.70 -11.47 4.47 -54.80 -0.24 -11.72 16 10 C 0.13 2.23 2.73 -67.93 -0.19 2.05 16 11 H 0.09 1.68 7.58 -51.93 -0.39 1.29 16 12 C -0.16 -2.14 9.48 37.16 0.35 -1.79 16 13 C 0.14 2.76 5.82 -4.04 -0.02 2.74 16 14 N -0.73 -18.03 5.43 -59.91 -0.33 -18.36 16 15 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 18 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 19 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.08 -1.03 9.52 -39.25 -0.37 -1.40 16 24 C -0.10 -1.23 9.73 -39.26 -0.38 -1.61 16 25 H 0.22 1.09 7.80 -54.09 -0.42 0.67 16 26 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 27 H 0.14 1.82 7.64 -52.49 -0.40 1.42 16 28 H 0.40 6.15 6.62 -40.82 -0.27 5.88 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.39 10.21 7.33 -40.82 -0.30 9.91 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.14 1.62 6.38 -52.48 -0.34 1.29 16 37 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 330.05 15.07 4.97 4.97 Total: -1.00 -32.63 330.05 -7.32 -39.95 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -4.63 Total: 12.43 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -2.89 Total: -6.54 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.15 Total: -57.25 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.63 -7.32 -39.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268697985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.544 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds