Wall clock time and date at job start Mon Mar 30 2020 01:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39716 * 119.99525 * 78.08229 * 3 2 1 5 5 C 1.37603 * 120.00476 * 179.97438 * 4 3 2 6 6 C 1.39743 * 119.99390 * 0.02562 * 5 4 3 7 7 C 1.47684 * 120.00362 * 179.97438 * 6 5 4 8 8 O 1.21579 * 120.00006 * 359.97438 * 7 6 5 9 9 N 1.34784 * 120.00450 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00075 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47049 * 324.99133 * 10 9 7 12 12 C 1.52997 * 109.47188 * 85.00024 * 10 9 7 13 13 C 1.53006 * 109.46631 * 204.99770 * 10 9 7 14 14 N 1.46501 * 109.47084 * 55.00356 * 13 10 9 15 15 C 1.36935 * 119.99826 * 179.97438 * 14 13 10 16 16 H 1.08001 * 120.00278 * 359.97438 * 15 14 13 17 17 C 1.38810 * 120.00042 * 179.97438 * 15 14 13 18 18 N 1.31619 * 120.00004 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00253 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46948 * 90.00189 * 19 17 15 21 21 H 1.48497 * 109.47019 * 210.00161 * 19 17 15 22 22 H 1.48494 * 109.46941 * 330.00403 * 19 17 15 23 23 C 1.39741 * 119.99361 * 0.27291 * 6 5 4 24 24 C 1.37599 * 119.99643 * 359.46602 * 23 6 5 25 25 H 4.51950 * 14.06471 * 359.97438 * 4 2 1 26 26 H 1.08004 * 119.99982 * 359.97438 * 4 3 2 27 27 H 1.08001 * 120.00176 * 179.97438 * 5 4 3 28 28 H 0.96996 * 119.99132 * 359.97438 * 9 7 6 29 29 H 1.09002 * 109.47153 * 299.99573 * 12 10 9 30 30 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 31 31 H 1.09004 * 109.47261 * 59.99745 * 12 10 9 32 32 H 1.08995 * 109.46750 * 174.99769 * 13 10 9 33 33 H 1.09001 * 109.47326 * 295.00148 * 13 10 9 34 34 H 0.96999 * 119.99782 * 359.97438 * 14 13 10 35 35 H 0.97009 * 120.00509 * 180.02562 * 18 17 15 36 36 H 1.08004 * 120.00614 * 179.72767 * 23 6 5 37 37 H 1.08002 * 119.99850 * 180.23214 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3046 -0.2489 -1.1840 5 6 4.6806 -0.2478 -1.1843 6 6 5.3793 0.0024 -0.0002 7 6 6.8561 0.0030 -0.0002 8 8 7.4641 -0.2146 -1.0303 9 7 7.5300 0.2449 1.1417 10 6 8.9950 0.2461 1.1415 11 1 9.3588 -0.5044 0.4398 12 6 9.5038 1.6264 0.7214 13 6 9.5053 -0.0797 2.5467 14 7 8.9223 -1.3461 2.9966 15 6 9.2366 -1.8436 4.2331 16 1 9.9147 -1.3025 4.8765 17 6 8.6838 -3.0432 4.6596 18 7 7.8578 -3.7029 3.8754 19 14 9.1132 -3.7223 6.3461 20 1 8.1460 -3.2067 7.3482 21 1 9.0489 -5.2055 6.3135 22 1 10.4858 -3.2943 6.7172 23 6 4.6804 0.2458 1.1852 24 6 3.3044 0.2500 1.1840 25 1 -1.0500 -0.0005 0.0000 26 1 2.7646 -0.4427 -2.0990 27 1 5.2206 -0.4412 -2.0994 28 1 7.0449 0.4189 1.9635 29 1 9.1402 1.8585 -0.2796 30 1 10.5938 1.6274 0.7217 31 1 9.1399 2.3769 1.4232 32 1 10.5917 -0.1664 2.5276 33 1 9.2164 0.7172 3.2321 34 1 8.3136 -1.8322 2.4186 35 1 7.4712 -4.5411 4.1736 36 1 5.2202 0.4349 2.1013 37 1 2.7643 0.4418 2.0994 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268697985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:52 Heat of formation + Delta-G solvation = 30.132396 kcal Electronic energy + Delta-G solvation = -19686.015015 eV Core-core repulsion = 16622.044931 eV Total energy + Delta-G solvation = -3063.970084 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.33640 -39.63831 -37.68273 -35.50072 -34.85785 -33.22583 -32.14845 -31.81640 -30.71937 -27.42787 -25.71436 -24.48176 -23.66968 -22.39264 -21.53730 -19.94835 -19.38128 -18.73665 -17.49316 -16.76480 -16.52749 -16.24537 -15.88206 -15.86360 -15.31565 -15.21923 -14.86368 -14.53115 -14.15935 -13.94428 -13.66524 -13.51960 -13.26212 -13.06433 -12.77290 -12.65173 -12.42693 -12.16284 -12.11552 -11.89303 -11.70727 -11.44466 -11.08405 -10.93050 -10.14425 -10.10030 -9.58455 -9.01388 -7.93712 -5.23844 -0.52708 0.31469 1.48873 1.49058 1.50312 1.58745 1.75769 2.14303 2.30750 2.56696 2.97568 3.27834 3.40627 3.65710 3.77739 3.88114 3.89778 4.05425 4.25213 4.29891 4.42865 4.51143 4.54764 4.79657 4.85744 4.90694 4.94231 4.94660 5.10903 5.24641 5.30046 5.32072 5.33495 5.50970 5.55107 5.76108 6.26422 6.51784 6.55209 7.16598 7.33896 8.07179 8.30937 9.29231 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014820 B = 0.004721 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.906995 B = 5930.022488 C = 7347.530237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.208 4.208 3 C 0.027 3.973 4 C -0.106 4.106 5 C -0.066 4.066 6 C -0.142 4.142 7 C 0.554 3.446 8 O -0.580 6.580 9 N -0.701 5.701 10 C 0.138 3.862 11 H 0.061 0.939 12 C -0.146 4.146 13 C 0.145 3.855 14 N -0.745 5.745 15 C -0.245 4.245 16 H 0.080 0.920 17 C -0.073 4.073 18 N -0.968 5.968 19 Si 0.973 3.027 20 H -0.285 1.285 21 H -0.300 1.300 22 H -0.269 1.269 23 C -0.079 4.079 24 C -0.107 4.107 25 H 0.264 0.736 26 H 0.154 0.846 27 H 0.139 0.861 28 H 0.408 0.592 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.043 0.957 34 H 0.373 0.627 35 H 0.250 0.750 36 H 0.142 0.858 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.505 12.267 -7.094 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.208 4.208 3 C 0.027 3.973 4 C -0.124 4.124 5 C -0.085 4.085 6 C -0.145 4.145 7 C 0.343 3.657 8 O -0.461 6.461 9 N -0.351 5.351 10 C 0.034 3.966 11 H 0.079 0.921 12 C -0.205 4.205 13 C 0.018 3.982 14 N -0.388 5.388 15 C -0.376 4.376 16 H 0.098 0.902 17 C -0.265 4.265 18 N -0.619 5.619 19 Si 0.802 3.198 20 H -0.212 1.212 21 H -0.227 1.227 22 H -0.194 1.194 23 C -0.098 4.098 24 C -0.125 4.125 25 H 0.280 0.720 26 H 0.171 0.829 27 H 0.157 0.843 28 H 0.245 0.755 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.205 0.795 35 H 0.059 0.941 36 H 0.160 0.840 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.910 12.137 -7.622 18.012 hybrid contribution -0.152 -0.944 0.988 1.375 sum -11.063 11.193 -6.635 17.079 Atomic orbital electron populations 1.25866 0.96467 0.95808 0.96528 1.20255 0.92425 1.04133 1.03962 1.16388 0.87731 0.99008 0.94156 1.21349 0.93094 0.99651 0.98302 1.21258 0.94109 0.95581 0.97586 1.20085 0.92100 1.06291 0.95999 1.18547 0.87911 0.75821 0.83413 1.90710 1.70713 1.51473 1.33245 1.45900 1.07503 1.70538 1.11182 1.21171 0.79288 0.98896 0.97293 0.92082 1.22009 1.02324 0.94690 1.01437 1.21152 0.96708 0.88180 0.92144 1.42557 1.55527 1.23310 1.17409 1.19643 1.21595 1.02994 0.93415 0.90187 1.25552 1.00429 0.98452 1.02064 1.69840 1.36297 1.17460 1.38310 0.85149 0.78132 0.76688 0.79808 1.21167 1.22697 1.19426 1.21404 0.94664 0.96595 0.97111 1.21351 0.93439 0.99530 0.98196 0.71963 0.82860 0.84335 0.75456 0.92948 0.89902 0.90755 0.94170 0.93935 0.79457 0.94146 0.84021 0.83193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 19.25 74.32 1.43 -0.48 16 2 C -0.21 -4.36 13.23 30.01 0.40 -3.96 16 3 C 0.03 0.66 5.73 -21.32 -0.12 0.54 16 4 C -0.11 -2.48 9.73 22.48 0.22 -2.26 16 5 C -0.07 -1.83 9.57 22.48 0.22 -1.61 16 6 C -0.14 -4.31 5.88 -20.05 -0.12 -4.43 16 7 C 0.55 19.68 7.73 86.74 0.67 20.35 16 8 O -0.58 -23.93 15.99 -3.96 -0.06 -23.99 16 9 N -0.70 -23.24 4.47 -445.55 -1.99 -25.23 16 10 C 0.14 4.66 2.73 44.99 0.12 4.78 16 11 H 0.06 2.40 7.58 -2.39 -0.02 2.39 16 12 C -0.15 -3.80 9.48 71.98 0.68 -3.11 16 13 C 0.14 5.45 5.82 86.38 0.50 5.96 16 14 N -0.74 -36.81 5.43 -343.45 -1.87 -38.67 16 15 C -0.24 -13.28 9.99 84.03 0.84 -12.45 16 16 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 17 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 18 N -0.97 -59.10 13.06 21.65 0.28 -58.82 16 19 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 C -0.08 -2.10 9.52 22.48 0.21 -1.88 16 24 C -0.11 -2.56 9.73 22.47 0.22 -2.34 16 25 H 0.26 1.24 7.80 -4.42 -0.03 1.21 16 26 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 27 H 0.14 3.76 7.64 -2.91 -0.02 3.74 16 28 H 0.41 12.55 6.62 -92.71 -0.61 11.94 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.37 20.21 7.33 -92.71 -0.68 19.54 16 35 H 0.25 14.87 8.31 -92.70 -0.77 14.10 16 36 H 0.14 3.43 6.38 -2.91 -0.02 3.41 16 37 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -70.80 330.05 3.93 -66.87 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: -0.20 Total: 36.89 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 5.74 Total: -4.54 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -3.57 Total: -122.72 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.06 Total: -23.99 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -70.80 3.93 -66.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268697985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.007 kcal (2) G-P(sol) polarization free energy of solvation -70.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds