Wall clock time and date at job start Mon Mar 30 2020 01:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46609 * 2 1 4 4 C 1.52994 * 109.47047 * 240.00405 * 2 1 3 5 5 C 1.47206 * 109.47146 * 174.99809 * 4 2 1 6 6 N 3.43550 * 154.82488 * 248.43993 * 2 1 3 7 7 N 1.46499 * 109.47208 * 120.00027 * 2 1 3 8 8 C 1.34769 * 120.00027 * 275.00504 * 7 2 1 9 9 O 1.21284 * 120.00626 * 359.97438 * 8 7 2 10 10 C 1.50703 * 119.99732 * 179.97438 * 8 7 2 11 11 H 1.08998 * 109.47281 * 59.99883 * 10 8 7 12 12 C 1.50699 * 109.47134 * 299.99400 * 10 8 7 13 13 H 1.08006 * 119.99745 * 125.77058 * 12 10 8 14 14 C 1.37874 * 120.00468 * 305.77403 * 12 10 8 15 15 N 1.31519 * 119.99779 * 5.08231 * 14 12 10 16 16 Si 1.86794 * 120.00243 * 185.08720 * 14 12 10 17 17 H 1.48504 * 109.47326 * 90.00042 * 16 14 12 18 18 H 1.48500 * 109.47032 * 209.99655 * 16 14 12 19 19 H 1.48496 * 109.47345 * 329.99934 * 16 14 12 20 20 C 1.50706 * 109.47041 * 179.97438 * 10 8 7 21 21 C 1.38228 * 119.99809 * 294.80700 * 20 10 8 22 22 C 1.38238 * 119.99766 * 179.79058 * 21 20 10 23 23 C 1.38236 * 119.99774 * 0.43685 * 22 21 20 24 24 C 1.38230 * 120.00396 * 359.81545 * 23 22 21 25 25 C 1.38237 * 119.99686 * 115.07955 * 20 10 8 26 26 H 1.09005 * 109.46971 * 59.99653 * 1 2 3 27 27 H 1.08995 * 109.47126 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47323 * 299.99972 * 1 2 3 29 29 H 1.08992 * 109.47498 * 295.00238 * 4 2 1 30 30 H 1.09005 * 109.47365 * 55.00172 * 4 2 1 31 31 H 0.96996 * 119.99203 * 94.99788 * 7 2 1 32 32 H 0.96994 * 120.00000 * 179.97438 * 15 14 12 33 33 H 1.08002 * 120.00581 * 359.97438 * 21 20 10 34 34 H 1.08000 * 120.00388 * 180.27352 * 22 21 20 35 35 H 1.08000 * 119.99757 * 179.83467 * 23 22 21 36 36 H 1.07997 * 120.00853 * 179.97438 * 24 23 22 37 37 H 1.08000 * 120.00218 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 3.5071 -0.6172 -1.3113 6 7 4.6392 -0.5370 -1.3592 7 7 2.0184 -0.6906 1.1961 8 6 2.1470 -0.0183 2.3571 9 8 1.8589 1.1585 2.4116 10 6 2.6488 -0.7290 3.5877 11 1 3.6479 -1.1215 3.3985 12 6 1.7184 -1.8651 3.9261 13 1 2.1078 -2.8660 4.0411 14 6 0.3702 -1.6271 4.0890 15 7 -0.1195 -0.4298 3.8514 16 14 -0.7608 -3.0049 4.6471 17 1 -0.8364 -3.0133 6.1301 18 1 -2.1179 -2.7902 4.0836 19 1 -0.2275 -4.3066 4.1712 20 6 2.7001 0.2395 4.7412 21 6 3.5731 1.3107 4.7059 22 6 3.6171 2.2015 5.7621 23 6 2.7945 2.0159 6.8575 24 6 1.9252 0.9418 6.8950 25 6 1.8782 0.0534 5.8369 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.7516 -1.7713 -1.2058 30 1 1.6054 -0.2615 -2.1370 31 1 2.2490 -1.6317 1.1525 32 1 -1.0681 -0.2624 3.9656 33 1 4.2187 1.4534 3.8520 34 1 4.2960 3.0409 5.7327 35 1 2.8308 2.7104 7.6838 36 1 1.2828 0.7965 7.7509 37 1 1.1990 -0.7858 5.8662 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293255438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:12 Heat of formation + Delta-G solvation = 10.208821 kcal Electronic energy + Delta-G solvation = -20985.357031 eV Core-core repulsion = 17920.522996 eV Total energy + Delta-G solvation = -3064.834035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.07642 -37.84498 -36.58561 -34.80659 -33.68307 -31.01572 -30.60196 -29.64803 -27.90187 -27.13767 -24.01056 -21.79235 -21.23594 -20.23902 -19.23506 -17.65248 -16.84875 -15.94650 -15.66321 -15.12564 -14.83982 -14.15074 -13.88324 -13.78328 -13.58570 -13.23648 -13.01913 -12.54220 -12.36751 -12.25757 -12.19686 -12.00115 -11.54455 -11.53112 -11.37155 -11.16777 -10.96617 -10.78075 -10.56987 -10.37199 -10.07523 -9.72845 -9.38144 -8.65442 -8.28944 -8.02472 -7.76791 -7.41048 -6.19016 -4.32884 2.49473 2.59245 2.90687 2.92949 3.16590 3.26335 3.27362 4.08841 4.12264 4.22514 4.42806 5.00562 5.03389 5.06788 5.28846 5.48221 5.80326 5.82981 5.85101 5.93154 6.02198 6.08390 6.31079 6.40312 6.60669 6.63615 6.81781 6.85232 6.89158 7.08598 7.21915 7.49965 7.54523 7.61462 7.68887 7.71056 7.79854 8.13880 8.26013 8.60067 8.80462 9.31774 9.74781 10.81559 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.007978 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.914479 B = 3508.796113 C = 4752.698197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.154 3.846 3 H 0.084 0.916 4 C -0.036 4.036 5 C 0.212 3.788 6 N -0.443 5.443 7 N -0.735 5.735 8 C 0.561 3.439 9 O -0.547 6.547 10 C 0.054 3.946 11 H 0.053 0.947 12 C -0.537 4.537 13 H 0.067 0.933 14 C 0.073 3.927 15 N -0.843 5.843 16 Si 0.885 3.115 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.017 4.017 21 C -0.114 4.114 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.148 4.148 25 C -0.059 4.059 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.395 0.605 32 H 0.266 0.734 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.039 -1.222 -5.139 5.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.102 0.898 4 C -0.077 4.077 5 C -0.106 4.106 6 N -0.119 5.119 7 N -0.389 5.389 8 C 0.350 3.650 9 O -0.423 6.423 10 C 0.033 3.967 11 H 0.071 0.929 12 C -0.575 4.575 13 H 0.085 0.915 14 C -0.134 4.134 15 N -0.476 5.476 16 Si 0.712 3.288 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.018 4.018 21 C -0.133 4.133 22 C -0.161 4.161 23 C -0.162 4.162 24 C -0.167 4.167 25 C -0.077 4.077 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.228 0.772 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.343 -0.100 -5.174 5.347 hybrid contribution -1.323 -1.092 0.313 1.744 sum 0.020 -1.192 -4.862 5.006 Atomic orbital electron populations 1.22123 0.94539 1.02238 1.02608 1.20590 0.94532 0.97081 0.83086 0.89784 1.19761 0.81993 1.04675 1.01260 1.29154 0.95307 0.93226 0.92921 1.81181 1.13069 1.08773 1.08923 1.45887 1.70178 1.13682 1.09107 1.20808 0.74954 0.86115 0.83110 1.90532 1.50179 1.17228 1.84331 1.17915 0.96756 0.93543 0.88472 0.92856 1.20745 0.91613 0.93458 1.51658 0.91520 1.25025 0.98176 0.95447 0.94766 1.70071 1.13807 1.19645 1.44038 0.86696 0.80222 0.82570 0.79293 1.20369 1.21169 1.19698 1.19844 0.92790 0.94032 0.95130 1.20884 0.99818 0.95387 0.97186 1.20779 1.00723 0.99435 0.95125 1.20789 0.98582 0.98602 0.98184 1.21066 0.99849 0.96575 0.99166 1.21422 0.96322 0.98501 0.91474 0.92966 0.92588 0.90309 0.87037 0.86539 0.77179 0.92389 0.88147 0.88018 0.88117 0.88000 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.48 37.16 0.35 -1.91 16 2 C 0.15 2.25 2.55 -67.93 -0.17 2.08 16 3 H 0.08 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.04 -0.36 5.25 -29.52 -0.16 -0.51 16 5 C 0.21 2.85 15.14 -20.76 -0.31 2.53 16 6 N -0.44 -7.29 18.54 42.15 0.78 -6.51 16 7 N -0.74 -13.30 4.68 -53.81 -0.25 -13.55 16 8 C 0.56 12.70 5.33 -10.99 -0.06 12.64 16 9 O -0.55 -14.13 14.82 5.55 0.08 -14.05 16 10 C 0.05 1.26 2.67 -94.07 -0.25 1.01 16 11 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 12 C -0.54 -12.64 7.62 -34.44 -0.26 -12.90 16 13 H 0.07 1.55 7.82 -52.48 -0.41 1.13 16 14 C 0.07 1.74 3.19 -17.82 -0.06 1.68 16 15 N -0.84 -21.38 10.42 55.43 0.58 -20.80 16 16 Si 0.89 18.86 29.54 -169.99 -5.02 13.84 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 20 C -0.02 -0.40 4.50 -104.62 -0.47 -0.87 16 21 C -0.11 -2.55 8.75 -39.58 -0.35 -2.90 16 22 C -0.14 -2.88 10.05 -39.58 -0.40 -3.28 16 23 C -0.14 -2.83 10.05 -39.59 -0.40 -3.23 16 24 C -0.15 -3.13 10.05 -39.58 -0.40 -3.53 16 25 C -0.06 -1.40 8.00 -39.58 -0.32 -1.72 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.39 6.55 8.49 -40.82 -0.35 6.20 16 32 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 35 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.14 3.37 4.97 -52.49 -0.26 3.11 16 LS Contribution 320.19 15.07 4.83 4.83 Total: -1.00 -30.13 320.19 -7.03 -37.16 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.77 Total: 10.01 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -3.25 Total: -10.92 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 1.11 Total: -40.87 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.08 Total: -14.05 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.13 -7.03 -37.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293255438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.365 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds