Wall clock time and date at job start Mon Mar 30 2020 01:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46609 * 2 1 4 4 C 1.52994 * 109.47047 * 240.00405 * 2 1 3 5 5 C 1.47206 * 109.47146 * 174.99809 * 4 2 1 6 6 N 3.43550 * 154.82488 * 248.43993 * 2 1 3 7 7 N 1.46499 * 109.47208 * 120.00027 * 2 1 3 8 8 C 1.34769 * 120.00027 * 275.00504 * 7 2 1 9 9 O 1.21284 * 120.00626 * 359.97438 * 8 7 2 10 10 C 1.50703 * 119.99732 * 179.97438 * 8 7 2 11 11 H 1.08998 * 109.47281 * 59.99883 * 10 8 7 12 12 C 1.50699 * 109.47134 * 299.99400 * 10 8 7 13 13 H 1.08006 * 119.99745 * 125.77058 * 12 10 8 14 14 C 1.37874 * 120.00468 * 305.77403 * 12 10 8 15 15 N 1.31519 * 119.99779 * 5.08231 * 14 12 10 16 16 Si 1.86794 * 120.00243 * 185.08720 * 14 12 10 17 17 H 1.48504 * 109.47326 * 90.00042 * 16 14 12 18 18 H 1.48500 * 109.47032 * 209.99655 * 16 14 12 19 19 H 1.48496 * 109.47345 * 329.99934 * 16 14 12 20 20 C 1.50706 * 109.47041 * 179.97438 * 10 8 7 21 21 C 1.38228 * 119.99809 * 294.80700 * 20 10 8 22 22 C 1.38238 * 119.99766 * 179.79058 * 21 20 10 23 23 C 1.38236 * 119.99774 * 0.43685 * 22 21 20 24 24 C 1.38230 * 120.00396 * 359.81545 * 23 22 21 25 25 C 1.38237 * 119.99686 * 115.07955 * 20 10 8 26 26 H 1.09005 * 109.46971 * 59.99653 * 1 2 3 27 27 H 1.08995 * 109.47126 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47323 * 299.99972 * 1 2 3 29 29 H 1.08992 * 109.47498 * 295.00238 * 4 2 1 30 30 H 1.09005 * 109.47365 * 55.00172 * 4 2 1 31 31 H 0.96996 * 119.99203 * 94.99788 * 7 2 1 32 32 H 0.96994 * 120.00000 * 179.97438 * 15 14 12 33 33 H 1.08002 * 120.00581 * 359.97438 * 21 20 10 34 34 H 1.08000 * 120.00388 * 180.27352 * 22 21 20 35 35 H 1.08000 * 119.99757 * 179.83467 * 23 22 21 36 36 H 1.07997 * 120.00853 * 179.97438 * 24 23 22 37 37 H 1.08000 * 120.00218 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 3.5071 -0.6172 -1.3113 6 7 4.6392 -0.5370 -1.3592 7 7 2.0184 -0.6906 1.1961 8 6 2.1470 -0.0183 2.3571 9 8 1.8589 1.1585 2.4116 10 6 2.6488 -0.7290 3.5877 11 1 3.6479 -1.1215 3.3985 12 6 1.7184 -1.8651 3.9261 13 1 2.1078 -2.8660 4.0411 14 6 0.3702 -1.6271 4.0890 15 7 -0.1195 -0.4298 3.8514 16 14 -0.7608 -3.0049 4.6471 17 1 -0.8364 -3.0133 6.1301 18 1 -2.1179 -2.7902 4.0836 19 1 -0.2275 -4.3066 4.1712 20 6 2.7001 0.2395 4.7412 21 6 3.5731 1.3107 4.7059 22 6 3.6171 2.2015 5.7621 23 6 2.7945 2.0159 6.8575 24 6 1.9252 0.9418 6.8950 25 6 1.8782 0.0534 5.8369 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.7516 -1.7713 -1.2058 30 1 1.6054 -0.2615 -2.1370 31 1 2.2490 -1.6317 1.1525 32 1 -1.0681 -0.2624 3.9656 33 1 4.2187 1.4534 3.8520 34 1 4.2960 3.0409 5.7327 35 1 2.8308 2.7104 7.6838 36 1 1.2828 0.7965 7.7509 37 1 1.1990 -0.7858 5.8662 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293255438.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:11 Heat of formation + Delta-G solvation = -7.811858 kcal Electronic energy + Delta-G solvation = -20986.138466 eV Core-core repulsion = 17920.522996 eV Total energy + Delta-G solvation = -3065.615470 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.72729 -39.37790 -37.88855 -36.16327 -35.49150 -32.74479 -32.04743 -31.32976 -29.08601 -28.73886 -25.80479 -23.22553 -22.90373 -21.74541 -20.88848 -18.94413 -18.42632 -17.46753 -17.15667 -16.76453 -16.52766 -15.69235 -15.45820 -15.20161 -14.96378 -14.56111 -14.39197 -14.16658 -14.05886 -13.85741 -13.75447 -13.21554 -13.03443 -12.94454 -12.67819 -12.50266 -12.47416 -12.42399 -12.14856 -11.78688 -11.73466 -11.43714 -11.14675 -10.49423 -10.08879 -9.56620 -9.45181 -9.10633 -8.03281 -6.21506 0.81868 0.91740 1.45321 1.51291 1.57226 1.82525 1.89079 2.39886 2.54286 2.85894 3.16205 3.22785 3.34297 3.98624 4.28400 4.33178 4.34262 4.47857 4.54770 4.62073 4.74278 4.83839 4.88972 4.96767 5.01658 5.06815 5.14721 5.31381 5.41708 5.55688 5.59316 5.74576 5.84831 5.94742 5.99481 6.12499 6.41826 6.51651 6.67343 6.80439 7.17685 7.45386 8.06069 8.95738 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.007978 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.914479 B = 3508.796113 C = 4752.698197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.151 3.849 3 H 0.060 0.940 4 C -0.022 4.022 5 C 0.233 3.767 6 N -0.502 5.502 7 N -0.728 5.728 8 C 0.560 3.440 9 O -0.586 6.586 10 C 0.044 3.956 11 H 0.054 0.946 12 C -0.537 4.537 13 H 0.066 0.934 14 C 0.047 3.953 15 N -0.865 5.865 16 Si 0.938 3.062 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.263 1.263 20 C -0.040 4.040 21 C -0.133 4.133 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.154 4.154 25 C -0.085 4.085 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.024 0.976 29 H 0.145 0.855 30 H 0.165 0.835 31 H 0.402 0.598 32 H 0.258 0.742 33 H 0.098 0.902 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.124 0.876 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.531 -1.588 -5.764 6.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.044 3.956 3 H 0.079 0.921 4 C -0.062 4.062 5 C -0.083 4.083 6 N -0.180 5.180 7 N -0.380 5.380 8 C 0.349 3.651 9 O -0.466 6.466 10 C 0.023 3.977 11 H 0.072 0.928 12 C -0.575 4.575 13 H 0.085 0.915 14 C -0.158 4.158 15 N -0.499 5.499 16 Si 0.764 3.236 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.188 1.188 20 C -0.041 4.041 21 C -0.151 4.151 22 C -0.160 4.160 23 C -0.158 4.158 24 C -0.172 4.172 25 C -0.103 4.103 26 H 0.110 0.890 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.163 0.837 30 H 0.183 0.817 31 H 0.237 0.763 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.142 0.858 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.787 -0.509 -5.829 5.904 hybrid contribution -1.128 -0.944 0.530 1.564 sum -0.341 -1.453 -5.299 5.505 Atomic orbital electron populations 1.21998 0.93954 1.02634 1.01877 1.20756 0.94900 0.96336 0.83571 0.92141 1.19956 0.79480 1.06491 1.00246 1.29786 0.95897 0.91428 0.91215 1.81207 1.15080 1.10867 1.10822 1.45828 1.69046 1.13978 1.09196 1.20682 0.74643 0.85640 0.84121 1.90494 1.52108 1.18790 1.85178 1.18026 0.96754 0.93756 0.89205 0.92778 1.20844 0.91856 0.93465 1.51360 0.91535 1.25454 0.99029 0.96734 0.94576 1.70222 1.13290 1.21192 1.45210 0.85872 0.78468 0.80849 0.78394 1.20899 1.21579 1.18768 1.20013 0.93684 0.94982 0.95450 1.21018 1.00054 0.95933 0.98131 1.21177 1.00905 0.99540 0.94391 1.21198 0.97193 0.98405 0.98955 1.21373 1.00344 0.96425 0.99100 1.21387 0.96919 0.99199 0.92783 0.89020 0.91551 0.95649 0.83724 0.81732 0.76289 0.93234 0.88406 0.84895 0.84248 0.85823 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.48 71.98 0.68 -3.31 16 2 C 0.15 4.19 2.55 44.99 0.11 4.31 16 3 H 0.06 2.00 7.58 -2.38 -0.02 1.98 16 4 C -0.02 -0.36 5.25 28.79 0.15 -0.20 16 5 C 0.23 5.85 15.14 89.44 1.35 7.21 16 6 N -0.50 -16.29 18.54 20.01 0.37 -15.92 16 7 N -0.73 -26.23 4.68 -442.54 -2.07 -28.30 16 8 C 0.56 25.98 5.33 87.66 0.47 26.45 16 9 O -0.59 -31.37 14.82 -3.04 -0.05 -31.41 16 10 C 0.04 2.09 2.67 -13.03 -0.03 2.05 16 11 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 12 C -0.54 -25.66 7.62 25.60 0.19 -25.46 16 13 H 0.07 3.10 7.82 -2.91 -0.02 3.08 16 14 C 0.05 2.25 3.19 84.65 0.27 2.52 16 15 N -0.87 -44.94 10.42 21.45 0.22 -44.72 16 16 Si 0.94 38.82 29.54 68.60 2.03 40.85 16 17 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 20 C -0.04 -1.96 4.50 -19.86 -0.09 -2.05 16 21 C -0.13 -6.00 8.75 22.27 0.19 -5.81 16 22 C -0.14 -5.56 10.05 22.27 0.22 -5.34 16 23 C -0.14 -5.21 10.05 22.27 0.22 -4.98 16 24 C -0.15 -6.39 10.05 22.27 0.22 -6.17 16 25 C -0.08 -4.07 8.00 22.27 0.18 -3.89 16 26 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.15 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.17 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.40 13.05 8.49 -92.71 -0.79 12.26 16 32 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 33 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 34 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 35 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 36 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.12 5.99 4.97 -2.91 -0.01 5.97 16 Total: -1.00 -69.04 320.19 4.96 -64.08 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.30 Total: 30.12 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 4.16 Total: -14.69 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -1.47 Total: -88.94 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.05 Total: -31.41 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -69.04 4.96 -64.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293255438.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.269 kcal (2) G-P(sol) polarization free energy of solvation -69.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds