Wall clock time and date at job start Mon Mar 30 2020 01:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47347 * 2 1 4 4 C 1.52997 * 109.47701 * 120.00212 * 2 1 3 5 5 C 1.47195 * 109.47527 * 185.00337 * 4 2 1 6 6 N 3.43555 * 154.82709 * 111.56723 * 2 1 3 7 7 N 1.46503 * 109.47285 * 240.00350 * 2 1 3 8 8 C 1.34775 * 119.99956 * 84.99399 * 7 2 1 9 9 O 1.21278 * 120.00386 * 0.02562 * 8 7 2 10 10 C 1.50701 * 119.99701 * 180.02562 * 8 7 2 11 11 H 1.08999 * 109.47166 * 60.00075 * 10 8 7 12 12 C 1.50699 * 109.47227 * 299.99935 * 10 8 7 13 13 H 1.07996 * 120.00315 * 324.88802 * 12 10 8 14 14 C 1.37880 * 119.99878 * 144.87994 * 12 10 8 15 15 N 1.31515 * 120.00193 * 5.19301 * 14 12 10 16 16 Si 1.86801 * 119.99880 * 185.19452 * 14 12 10 17 17 H 1.48500 * 109.47127 * 60.00239 * 16 14 12 18 18 H 1.48504 * 109.46910 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47405 * 300.00470 * 16 14 12 20 20 C 1.50699 * 109.46898 * 180.02562 * 10 8 7 21 21 C 1.38232 * 120.00136 * 66.01500 * 20 10 8 22 22 C 1.38238 * 120.00087 * 179.79054 * 21 20 10 23 23 C 1.38235 * 119.99614 * 0.43511 * 22 21 20 24 24 C 1.38227 * 120.00284 * 359.81325 * 23 22 21 25 25 C 1.38238 * 119.99785 * 246.28473 * 20 10 8 26 26 H 1.09002 * 109.46761 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46720 * 299.99738 * 1 2 3 28 28 H 1.08991 * 109.47480 * 59.99742 * 1 2 3 29 29 H 1.08999 * 109.47078 * 64.99774 * 4 2 1 30 30 H 1.09007 * 109.46903 * 304.99991 * 4 2 1 31 31 H 0.97003 * 119.99532 * 265.00362 * 7 2 1 32 32 H 0.96999 * 119.99899 * 179.97438 * 15 14 12 33 33 H 1.08004 * 119.99944 * 359.97438 * 21 20 10 34 34 H 1.07993 * 120.00159 * 180.27470 * 22 21 20 35 35 H 1.07998 * 119.99779 * 179.83798 * 23 22 21 36 36 H 1.08007 * 120.00286 * 179.97438 * 24 23 22 37 37 H 1.08003 * 120.00216 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5071 -0.6173 1.3112 6 7 4.6393 -0.5372 1.3590 7 7 2.0184 -0.6905 -1.1962 8 6 2.1470 -0.0181 -2.3572 9 8 1.8589 1.1587 -2.4115 10 6 2.6488 -0.7287 -3.5878 11 1 1.9760 -1.5505 -3.8326 12 6 4.0302 -1.2713 -3.3263 13 1 4.7174 -0.7205 -2.7013 14 6 4.4167 -2.4711 -3.8851 15 7 3.6194 -3.0916 -4.7270 16 14 6.0729 -3.2153 -3.4461 17 1 6.1311 -3.4654 -1.9834 18 1 6.2485 -4.4970 -4.1753 19 1 7.1559 -2.2749 -3.8308 20 6 2.7001 0.2399 -4.7412 21 6 3.5850 1.3014 -4.7135 22 6 3.6351 2.1874 -5.7734 23 6 2.7939 2.0169 -6.8570 24 6 1.9054 0.9583 -6.8824 25 6 1.8582 0.0699 -5.8244 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.7518 -1.7715 1.2055 30 1 1.6055 -0.2617 2.1370 31 1 2.2490 -1.6317 -1.1526 32 1 3.8915 -3.9354 -5.1204 33 1 4.2394 1.4370 -3.8650 34 1 4.3296 3.0142 -5.7538 35 1 2.8312 2.7105 -7.6839 36 1 1.2478 0.8253 -7.7289 37 1 1.1640 -0.7573 -5.8442 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001293255439.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:14 Heat of formation + Delta-G solvation = -1.263995 kcal Electronic energy + Delta-G solvation = -20552.313986 eV Core-core repulsion = 17486.982453 eV Total energy + Delta-G solvation = -3065.331533 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.35580 -37.99472 -36.71530 -35.01986 -33.65161 -31.27630 -30.82668 -29.91420 -28.13348 -27.22718 -24.00722 -22.02435 -21.56122 -20.48569 -19.41446 -17.70463 -16.78465 -16.09392 -16.01804 -15.67298 -14.56200 -14.33315 -14.11557 -13.90901 -13.72048 -13.43918 -13.12385 -12.86064 -12.46953 -12.37438 -12.22966 -12.02944 -11.70235 -11.65028 -11.53650 -11.39197 -11.03851 -11.00273 -10.83292 -10.39732 -10.25370 -9.99478 -9.43103 -8.78384 -8.62938 -8.45677 -7.92339 -7.58757 -6.27664 -4.33769 2.39964 2.42611 2.93543 2.97648 3.22257 3.26618 3.31035 3.67176 3.91866 4.09359 4.29204 4.83126 4.85427 5.08780 5.16963 5.31075 5.47938 5.59250 5.74019 5.75976 5.81547 5.91231 6.03286 6.23202 6.31412 6.38578 6.51641 6.61944 6.86593 6.99075 7.12491 7.19992 7.39083 7.46761 7.63369 7.75793 7.76869 7.96843 8.08261 8.31668 8.70458 9.20218 9.32782 10.80290 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012544 B = 0.007960 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.633518 B = 3516.617676 C = 4893.105711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.090 0.910 4 C -0.033 4.033 5 C 0.203 3.797 6 N -0.429 5.429 7 N -0.729 5.729 8 C 0.531 3.469 9 O -0.565 6.565 10 C 0.051 3.949 11 H 0.089 0.911 12 C -0.514 4.514 13 H 0.060 0.940 14 C 0.076 3.924 15 N -0.877 5.877 16 Si 0.894 3.106 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.009 4.009 21 C -0.085 4.085 22 C -0.135 4.135 23 C -0.149 4.149 24 C -0.132 4.132 25 C -0.118 4.118 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.405 0.595 32 H 0.267 0.733 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.363 2.360 6.558 10.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.108 0.892 4 C -0.073 4.073 5 C -0.116 4.116 6 N -0.105 5.105 7 N -0.383 5.383 8 C 0.321 3.679 9 O -0.443 6.443 10 C 0.030 3.970 11 H 0.107 0.893 12 C -0.552 4.552 13 H 0.079 0.921 14 C -0.129 4.129 15 N -0.513 5.513 16 Si 0.722 3.278 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.200 1.200 20 C -0.010 4.010 21 C -0.103 4.103 22 C -0.153 4.153 23 C -0.167 4.167 24 C -0.150 4.150 25 C -0.136 4.136 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.240 0.760 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.881 3.142 6.474 9.293 hybrid contribution 0.715 -1.017 0.052 1.244 sum -5.166 2.125 6.526 8.590 Atomic orbital electron populations 1.22163 0.94536 1.02411 1.02752 1.20752 0.94276 0.97755 0.83446 0.89241 1.19661 0.82401 1.04545 1.00694 1.29005 0.95220 0.93798 0.93540 1.81217 1.12959 1.08127 1.08226 1.46050 1.68689 1.14530 1.08993 1.21650 0.74221 0.86812 0.85251 1.90581 1.51167 1.16823 1.85756 1.18108 0.99305 0.93480 0.86084 0.89293 1.20634 0.97201 1.05352 1.31998 0.92143 1.24933 0.97305 0.96644 0.94028 1.69904 1.36777 1.16836 1.27737 0.86597 0.83960 0.78505 0.78781 1.19938 1.21049 1.19981 1.20015 0.92124 0.93066 0.95780 1.20817 0.98016 0.94169 0.97344 1.20947 0.99805 0.99627 0.94888 1.20784 0.98468 0.99000 0.98453 1.20894 0.99661 0.96061 0.98395 1.20975 0.99523 0.98722 0.94364 0.92106 0.91861 0.91395 0.86965 0.86373 0.75952 0.92311 0.87274 0.87669 0.87760 0.87592 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.48 37.16 0.35 -1.31 16 2 C 0.14 1.81 2.55 -67.93 -0.17 1.64 16 3 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 4 C -0.03 -0.29 5.25 -29.52 -0.16 -0.45 16 5 C 0.20 2.85 15.14 -20.76 -0.31 2.53 16 6 N -0.43 -7.67 18.54 42.15 0.78 -6.89 16 7 N -0.73 -12.16 4.68 -53.81 -0.25 -12.41 16 8 C 0.53 11.23 7.01 -10.99 -0.08 11.16 16 9 O -0.56 -13.10 15.08 5.56 0.08 -13.02 16 10 C 0.05 1.20 2.38 -94.08 -0.22 0.97 16 11 H 0.09 2.17 7.13 -51.93 -0.37 1.80 16 12 C -0.51 -12.95 7.47 -34.44 -0.26 -13.20 16 13 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 14 C 0.08 1.94 5.45 -17.82 -0.10 1.84 16 15 N -0.88 -23.06 12.84 55.43 0.71 -22.35 16 16 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.01 -0.21 4.30 -104.62 -0.45 -0.66 16 21 C -0.09 -1.95 8.30 -39.58 -0.33 -2.28 16 22 C -0.13 -2.71 10.05 -39.58 -0.40 -3.11 16 23 C -0.15 -2.81 10.05 -39.59 -0.40 -3.20 16 24 C -0.13 -2.56 10.05 -39.59 -0.40 -2.96 16 25 C -0.12 -2.57 9.67 -39.58 -0.38 -2.95 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.41 6.50 8.49 -40.82 -0.35 6.16 16 32 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.11 2.57 7.89 -52.48 -0.41 2.15 16 34 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.11 2.33 7.96 -52.48 -0.42 1.91 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -31.56 329.19 -6.90 -38.46 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -4.87 Total: 7.68 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -3.30 Total: -11.98 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 1.24 Total: -41.64 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.08 Total: -13.02 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.56 -6.90 -38.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293255439.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.196 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds