Wall clock time and date at job start Mon Mar 30 2020 01:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47347 * 2 1 4 4 C 1.52997 * 109.47701 * 120.00212 * 2 1 3 5 5 C 1.47195 * 109.47527 * 185.00337 * 4 2 1 6 6 N 3.43555 * 154.82709 * 111.56723 * 2 1 3 7 7 N 1.46503 * 109.47285 * 240.00350 * 2 1 3 8 8 C 1.34775 * 119.99956 * 84.99399 * 7 2 1 9 9 O 1.21278 * 120.00386 * 0.02562 * 8 7 2 10 10 C 1.50701 * 119.99701 * 180.02562 * 8 7 2 11 11 H 1.08999 * 109.47166 * 60.00075 * 10 8 7 12 12 C 1.50699 * 109.47227 * 299.99935 * 10 8 7 13 13 H 1.07996 * 120.00315 * 324.88802 * 12 10 8 14 14 C 1.37880 * 119.99878 * 144.87994 * 12 10 8 15 15 N 1.31515 * 120.00193 * 5.19301 * 14 12 10 16 16 Si 1.86801 * 119.99880 * 185.19452 * 14 12 10 17 17 H 1.48500 * 109.47127 * 60.00239 * 16 14 12 18 18 H 1.48504 * 109.46910 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47405 * 300.00470 * 16 14 12 20 20 C 1.50699 * 109.46898 * 180.02562 * 10 8 7 21 21 C 1.38232 * 120.00136 * 66.01500 * 20 10 8 22 22 C 1.38238 * 120.00087 * 179.79054 * 21 20 10 23 23 C 1.38235 * 119.99614 * 0.43511 * 22 21 20 24 24 C 1.38227 * 120.00284 * 359.81325 * 23 22 21 25 25 C 1.38238 * 119.99785 * 246.28473 * 20 10 8 26 26 H 1.09002 * 109.46761 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46720 * 299.99738 * 1 2 3 28 28 H 1.08991 * 109.47480 * 59.99742 * 1 2 3 29 29 H 1.08999 * 109.47078 * 64.99774 * 4 2 1 30 30 H 1.09007 * 109.46903 * 304.99991 * 4 2 1 31 31 H 0.97003 * 119.99532 * 265.00362 * 7 2 1 32 32 H 0.96999 * 119.99899 * 179.97438 * 15 14 12 33 33 H 1.08004 * 119.99944 * 359.97438 * 21 20 10 34 34 H 1.07993 * 120.00159 * 180.27470 * 22 21 20 35 35 H 1.07998 * 119.99779 * 179.83798 * 23 22 21 36 36 H 1.08007 * 120.00286 * 179.97438 * 24 23 22 37 37 H 1.08003 * 120.00216 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5071 -0.6173 1.3112 6 7 4.6393 -0.5372 1.3590 7 7 2.0184 -0.6905 -1.1962 8 6 2.1470 -0.0181 -2.3572 9 8 1.8589 1.1587 -2.4115 10 6 2.6488 -0.7287 -3.5878 11 1 1.9760 -1.5505 -3.8326 12 6 4.0302 -1.2713 -3.3263 13 1 4.7174 -0.7205 -2.7013 14 6 4.4167 -2.4711 -3.8851 15 7 3.6194 -3.0916 -4.7270 16 14 6.0729 -3.2153 -3.4461 17 1 6.1311 -3.4654 -1.9834 18 1 6.2485 -4.4970 -4.1753 19 1 7.1559 -2.2749 -3.8308 20 6 2.7001 0.2399 -4.7412 21 6 3.5850 1.3014 -4.7135 22 6 3.6351 2.1874 -5.7734 23 6 2.7939 2.0169 -6.8570 24 6 1.9054 0.9583 -6.8824 25 6 1.8582 0.0699 -5.8244 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.7518 -1.7715 1.2055 30 1 1.6055 -0.2617 2.1370 31 1 2.2490 -1.6317 -1.1526 32 1 3.8915 -3.9354 -5.1204 33 1 4.2394 1.4370 -3.8650 34 1 4.3296 3.0142 -5.7538 35 1 2.8312 2.7105 -7.6839 36 1 1.2478 0.8253 -7.7289 37 1 1.1640 -0.7573 -5.8442 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001293255439.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:14 Heat of formation + Delta-G solvation = -20.643020 kcal Electronic energy + Delta-G solvation = -20553.154324 eV Core-core repulsion = 17486.982453 eV Total energy + Delta-G solvation = -3066.171871 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.92875 -39.50395 -37.99827 -36.30603 -35.53196 -32.99232 -32.21335 -31.53690 -29.15859 -28.80837 -25.86672 -23.38144 -23.16356 -21.87145 -20.99480 -18.91452 -18.57500 -17.66604 -17.52214 -17.05674 -16.35877 -15.90522 -15.55978 -15.34297 -15.04867 -14.72449 -14.47704 -14.31900 -14.05420 -13.97962 -13.52098 -13.36924 -13.25297 -13.02468 -12.91245 -12.79860 -12.55548 -12.48854 -12.21440 -11.96343 -11.80002 -11.67066 -11.29836 -10.71222 -10.38719 -9.86552 -9.55932 -9.25474 -8.25177 -6.35250 0.75532 0.80680 1.35353 1.37752 1.44668 1.82248 1.88913 1.99919 2.38349 2.58260 3.04252 3.14407 3.26944 3.89849 4.21982 4.29530 4.31094 4.39759 4.44598 4.50198 4.59430 4.77367 4.85712 4.87768 4.97516 4.98506 5.11002 5.20457 5.37536 5.44303 5.48191 5.61439 5.77919 5.78873 5.84713 5.94582 6.23678 6.40514 6.67024 6.69939 6.82482 7.31542 7.60549 8.82279 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012544 B = 0.007960 C = 0.005721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.633518 B = 3516.617676 C = 4893.105711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.139 3.861 3 H 0.065 0.935 4 C -0.023 4.023 5 C 0.226 3.774 6 N -0.506 5.506 7 N -0.720 5.720 8 C 0.529 3.471 9 O -0.591 6.591 10 C 0.052 3.948 11 H 0.071 0.929 12 C -0.514 4.514 13 H 0.040 0.960 14 C 0.043 3.957 15 N -0.897 5.897 16 Si 0.942 3.058 17 H -0.272 1.272 18 H -0.276 1.276 19 H -0.284 1.284 20 C -0.037 4.037 21 C -0.114 4.114 22 C -0.137 4.137 23 C -0.143 4.143 24 C -0.128 4.128 25 C -0.139 4.139 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.033 0.967 29 H 0.148 0.852 30 H 0.172 0.828 31 H 0.408 0.592 32 H 0.268 0.732 33 H 0.087 0.913 34 H 0.132 0.868 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.710 2.452 6.852 11.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.033 3.967 3 H 0.083 0.917 4 C -0.063 4.063 5 C -0.090 4.090 6 N -0.184 5.184 7 N -0.372 5.372 8 C 0.317 3.683 9 O -0.472 6.472 10 C 0.031 3.969 11 H 0.089 0.911 12 C -0.552 4.552 13 H 0.058 0.942 14 C -0.160 4.160 15 N -0.534 5.534 16 Si 0.768 3.232 17 H -0.198 1.198 18 H -0.200 1.200 19 H -0.210 1.210 20 C -0.038 4.038 21 C -0.132 4.132 22 C -0.155 4.155 23 C -0.161 4.161 24 C -0.146 4.146 25 C -0.158 4.158 26 H 0.099 0.901 27 H 0.119 0.881 28 H 0.052 0.948 29 H 0.165 0.835 30 H 0.190 0.810 31 H 0.244 0.756 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.150 0.850 35 H 0.165 0.835 36 H 0.160 0.840 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.239 3.211 6.804 10.441 hybrid contribution 1.066 -0.974 -0.055 1.445 sum -6.173 2.237 6.750 9.417 Atomic orbital electron populations 1.22089 0.92100 1.03772 1.02936 1.21040 0.96069 0.96565 0.83005 0.91690 1.20056 0.78939 1.06742 1.00563 1.29996 0.96212 0.91501 0.91314 1.81237 1.15585 1.10838 1.10772 1.46039 1.67396 1.14590 1.09194 1.21256 0.74465 0.86440 0.86097 1.90548 1.52635 1.17698 1.86343 1.18005 0.97912 0.93303 0.87689 0.91069 1.20607 0.97817 1.05280 1.31457 0.94215 1.25418 0.99540 0.96982 0.94074 1.69974 1.37834 1.17129 1.28454 0.85865 0.80818 0.77901 0.78575 1.19773 1.20037 1.21045 1.20142 0.93395 0.93785 0.96450 1.20806 0.98645 0.95638 0.98123 1.21297 1.00355 0.99503 0.94332 1.21255 0.96924 0.99098 0.98829 1.21320 0.99758 0.95118 0.98371 1.21148 0.99811 0.99773 0.95023 0.90137 0.88070 0.94801 0.83475 0.81044 0.75597 0.92219 0.89500 0.85039 0.83549 0.84044 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.48 71.98 0.68 -2.05 16 2 C 0.14 3.27 2.55 44.99 0.11 3.38 16 3 H 0.06 1.89 7.58 -2.39 -0.02 1.87 16 4 C -0.02 -0.34 5.25 28.79 0.15 -0.19 16 5 C 0.23 6.12 15.14 89.44 1.35 7.47 16 6 N -0.51 -18.38 18.54 20.00 0.37 -18.01 16 7 N -0.72 -24.14 4.68 -442.54 -2.07 -26.21 16 8 C 0.53 23.24 7.01 87.66 0.61 23.86 16 9 O -0.59 -28.55 15.08 -3.02 -0.05 -28.60 16 10 C 0.05 2.54 2.38 -13.03 -0.03 2.51 16 11 H 0.07 3.65 7.13 -2.39 -0.02 3.63 16 12 C -0.51 -26.90 7.47 25.60 0.19 -26.71 16 13 H 0.04 2.20 7.82 -2.91 -0.02 2.18 16 14 C 0.04 2.22 5.45 84.66 0.46 2.68 16 15 N -0.90 -47.97 12.84 21.45 0.28 -47.70 16 16 Si 0.94 42.87 29.54 68.60 2.03 44.89 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 20 C -0.04 -1.78 4.30 -19.87 -0.09 -1.87 16 21 C -0.11 -5.38 8.30 22.27 0.18 -5.19 16 22 C -0.14 -5.40 10.05 22.27 0.22 -5.17 16 23 C -0.14 -5.02 10.05 22.27 0.22 -4.79 16 24 C -0.13 -4.72 10.05 22.27 0.22 -4.49 16 25 C -0.14 -6.14 9.67 22.27 0.22 -5.92 16 26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.10 1.10 8.14 -2.38 -0.02 1.09 16 28 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.15 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.17 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.41 13.07 8.49 -92.71 -0.79 12.28 16 32 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 33 H 0.09 4.35 7.89 -2.91 -0.02 4.33 16 34 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 35 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 36 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 37 H 0.11 4.74 7.96 -2.91 -0.02 4.71 16 Total: -1.00 -73.54 329.19 5.37 -68.16 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.29 Total: 23.96 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 4.52 Total: -16.49 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -1.42 Total: -91.92 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.05 Total: -28.60 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -73.54 5.37 -68.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001293255439.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.519 kcal (2) G-P(sol) polarization free energy of solvation -73.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds