Wall clock time and date at job start Mon Mar 30 2020 01:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46733 * 2 1 4 4 C 1.46495 * 120.00476 * 89.99762 * 3 2 1 5 5 C 1.50700 * 109.47004 * 86.77510 * 4 3 2 6 6 C 1.41383 * 126.58126 * 84.32833 * 5 4 3 7 7 C 1.34511 * 106.84336 * 179.97438 * 6 5 4 8 8 O 1.34304 * 108.42097 * 359.97438 * 7 6 5 9 9 C 1.34306 * 109.47639 * 359.76614 * 8 7 6 10 10 C 1.38823 * 119.99842 * 269.99256 * 3 2 1 11 11 C 1.39808 * 119.58376 * 9.62996 * 10 3 2 12 12 C 1.38588 * 119.49119 * 179.97438 * 11 10 3 13 13 C 1.38393 * 118.68257 * 0.02562 * 12 11 10 14 14 C 1.40551 * 119.14856 * 359.97438 * 13 12 11 15 15 C 1.41322 * 119.78554 * 180.02562 * 14 13 12 16 16 H 1.07994 * 119.99848 * 336.39978 * 15 14 13 17 17 C 1.40021 * 119.99779 * 156.39893 * 15 14 13 18 18 N 1.30747 * 119.99721 * 165.73694 * 17 15 14 19 19 Si 1.86801 * 120.00577 * 345.73850 * 17 15 14 20 20 H 1.48503 * 109.46760 * 94.65481 * 19 17 15 21 21 H 1.48494 * 109.47255 * 214.65693 * 19 17 15 22 22 H 1.48501 * 109.46715 * 334.66065 * 19 17 15 23 23 N 1.31956 * 119.58871 * 189.36046 * 10 3 2 24 24 H 1.09011 * 109.47133 * 60.00636 * 1 2 3 25 25 H 1.09007 * 109.47324 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47995 * 300.00487 * 1 2 3 27 27 H 1.08997 * 109.46909 * 119.99308 * 2 1 3 28 28 H 1.08993 * 109.47541 * 239.99646 * 2 1 3 29 29 H 1.08997 * 109.47734 * 206.77417 * 4 3 2 30 30 H 1.08996 * 109.46795 * 326.77983 * 4 3 2 31 31 H 1.07999 * 126.57503 * 359.97438 * 6 5 4 32 32 H 1.08000 * 125.79287 * 180.02562 * 7 6 5 33 33 H 1.07996 * 125.79278 * 180.23776 * 9 8 7 34 34 H 1.08002 * 120.24904 * 359.97339 * 11 10 3 35 35 H 1.07996 * 120.66201 * 180.02562 * 12 11 10 36 36 H 1.08000 * 120.42444 * 179.97438 * 13 12 11 37 37 H 0.97007 * 120.00146 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2623 2.0720 1.2686 5 6 3.6604 1.7708 1.7436 6 6 4.8446 2.4381 1.3546 7 6 5.8581 1.8511 2.0160 8 8 5.3534 0.8694 2.7812 9 6 4.0204 0.8197 2.6242 10 6 2.2497 2.0356 -1.2023 11 6 1.8271 1.4500 -2.3994 12 6 2.0587 2.1051 -3.5984 13 6 2.7065 3.3278 -3.5730 14 6 3.1070 3.8647 -2.3373 15 6 3.7690 5.1126 -2.2956 16 1 4.3004 5.4712 -3.1647 17 6 3.7359 5.8839 -1.1275 18 7 4.5611 6.8878 -0.9834 19 14 2.5130 5.4788 0.2251 20 1 3.1632 4.6053 1.2349 21 1 2.0598 6.7346 0.8752 22 1 1.3438 4.7741 -0.3595 23 7 2.8610 3.2050 -1.2004 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3635 0.5139 0.8899 27 1 1.8933 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 2.1512 3.1467 1.1246 30 1 1.5439 1.7290 2.0131 31 1 4.9207 3.2613 0.6597 32 1 6.9007 2.1234 1.9447 33 1 3.3515 0.1311 3.1187 34 1 1.3241 0.4943 -2.3897 35 1 1.7400 1.6702 -4.5342 36 1 2.9018 3.8625 -4.4908 37 1 4.5380 7.4225 -0.1743 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320363734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:20 Heat of formation + Delta-G solvation = 52.467600 kcal Electronic energy + Delta-G solvation = -21231.577053 eV Core-core repulsion = 18168.575497 eV Total energy + Delta-G solvation = -3063.001557 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.12468 -38.91923 -36.40900 -33.56520 -33.06752 -31.32126 -30.51744 -29.85650 -28.42851 -26.22957 -24.87858 -22.85664 -21.50748 -21.06074 -20.39412 -19.47075 -17.60024 -17.16797 -16.55512 -15.63636 -15.13868 -14.88930 -14.66239 -14.37482 -13.91599 -13.55157 -13.43140 -13.16056 -12.54503 -12.40209 -12.33828 -12.11860 -11.94637 -11.72573 -11.48928 -10.99851 -10.78367 -10.73973 -10.48745 -10.32590 -9.92629 -9.37611 -9.26823 -8.85650 -8.24242 -8.19765 -7.78631 -6.85225 -6.68858 -4.60319 2.10225 2.68040 2.85972 2.99104 3.36705 3.44424 3.48887 3.54703 3.86474 4.30293 4.63134 5.10536 5.18957 5.28218 5.35712 5.49732 5.58214 5.64225 5.83388 5.90635 5.95665 6.00230 6.18977 6.24033 6.32799 6.42928 6.51931 6.54524 6.56236 6.70551 6.74287 7.01480 7.12803 7.36406 7.49580 7.62750 7.71107 7.87753 8.19065 8.31895 8.70606 8.76564 9.74700 10.09813 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.010107 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.091203 B = 2769.746897 C = 3991.352428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.613 5.613 4 C 0.188 3.812 5 C -0.177 4.177 6 C -0.170 4.170 7 C -0.066 4.066 8 O -0.186 6.186 9 C -0.054 4.054 10 C 0.432 3.568 11 C -0.354 4.354 12 C -0.024 4.024 13 C -0.297 4.297 14 C 0.285 3.715 15 C -0.425 4.425 16 H 0.095 0.905 17 C 0.093 3.907 18 N -0.806 5.806 19 Si 0.964 3.036 20 H -0.255 1.255 21 H -0.325 1.325 22 H -0.264 1.264 23 N -0.600 5.600 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.157 0.843 32 H 0.197 0.803 33 H 0.194 0.806 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.560 -10.430 6.494 12.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.009 3.991 3 N -0.330 5.330 4 C 0.064 3.936 5 C -0.180 4.180 6 C -0.190 4.190 7 C -0.132 4.132 8 O -0.082 6.082 9 C -0.123 4.123 10 C 0.196 3.804 11 C -0.380 4.380 12 C -0.048 4.048 13 C -0.320 4.320 14 C 0.160 3.840 15 C -0.456 4.456 16 H 0.113 0.887 17 C -0.129 4.129 18 N -0.430 5.430 19 Si 0.797 3.203 20 H -0.181 1.181 21 H -0.257 1.257 22 H -0.189 1.189 23 N -0.326 5.326 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.082 0.918 31 H 0.175 0.825 32 H 0.214 0.786 33 H 0.210 0.790 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.013 -10.091 7.574 12.972 hybrid contribution -0.704 -0.316 -0.453 0.895 sum -3.717 -10.407 7.122 13.147 Atomic orbital electron populations 1.22259 0.97065 1.01114 1.02576 1.21163 0.93362 0.82742 1.01861 1.46194 1.71689 1.12596 1.02488 1.19800 0.89483 0.99496 0.84803 1.21038 0.98109 0.98720 1.00173 1.22050 0.91464 1.02954 1.02493 1.23964 0.99658 0.92089 0.97521 1.83984 1.21483 1.47025 1.55732 1.23715 0.81914 1.02895 1.03758 1.18138 0.88635 0.89260 0.84369 1.20598 1.20538 1.04725 0.92113 1.20720 0.94444 0.93769 0.95916 1.21513 1.12569 0.99566 0.98344 1.18245 0.87514 0.92104 0.86159 1.19385 1.27290 0.99358 0.99606 0.88724 1.26213 0.94843 0.92650 0.99149 1.69674 1.30675 1.15103 1.27589 0.85397 0.81408 0.74235 0.79277 1.18122 1.25652 1.18946 1.66784 1.25525 1.09582 1.30667 0.91917 0.92472 0.92944 0.91869 0.90908 0.88669 0.91767 0.82535 0.78581 0.78969 0.88184 0.88270 0.87901 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.09 37.16 0.37 -1.78 16 2 C 0.13 1.91 5.73 -4.04 -0.02 1.88 16 3 N -0.61 -11.44 2.57 -175.18 -0.45 -11.89 16 4 C 0.19 3.40 5.90 -5.20 -0.03 3.37 16 5 C -0.18 -3.17 5.75 -104.74 -0.60 -3.77 16 6 C -0.17 -3.30 10.28 -39.70 -0.41 -3.71 16 7 C -0.07 -1.07 12.09 29.41 0.36 -0.71 16 8 O -0.19 -2.94 10.65 5.70 0.06 -2.88 16 9 C -0.05 -0.81 12.01 29.42 0.35 -0.46 16 10 C 0.43 9.63 7.34 -155.32 -1.14 8.49 16 11 C -0.35 -7.45 8.91 -38.87 -0.35 -7.80 16 12 C -0.02 -0.52 10.15 -39.40 -0.40 -0.92 16 13 C -0.30 -7.07 9.83 -38.65 -0.38 -7.45 16 14 C 0.28 7.41 5.95 -85.00 -0.51 6.90 16 15 C -0.42 -11.60 9.65 -37.74 -0.36 -11.97 16 16 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 17 C 0.09 2.48 5.50 -17.35 -0.10 2.38 16 18 N -0.81 -21.62 13.92 55.55 0.77 -20.85 16 19 Si 0.96 23.13 23.46 -169.99 -3.99 19.14 16 20 H -0.25 -5.85 5.09 56.52 0.29 -5.56 16 21 H -0.32 -7.72 7.11 56.52 0.40 -7.32 16 22 H -0.26 -6.71 6.68 56.52 0.38 -6.33 16 23 N -0.60 -14.83 5.03 -10.32 -0.05 -14.88 16 24 H 0.06 0.90 7.48 -51.92 -0.39 0.51 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.78 8.07 -51.93 -0.42 0.36 16 28 H 0.07 1.06 6.61 -51.93 -0.34 0.72 16 29 H 0.10 1.99 3.22 -51.93 -0.17 1.83 16 30 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 31 H 0.16 3.50 7.74 -52.49 -0.41 3.10 16 32 H 0.20 2.51 8.06 -52.49 -0.42 2.09 16 33 H 0.19 2.07 8.06 -52.49 -0.42 1.65 16 34 H 0.10 1.84 5.92 -52.49 -0.31 1.53 16 35 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 37 H 0.29 7.00 8.29 -40.82 -0.34 6.66 16 LS Contribution 305.68 15.07 4.61 4.61 Total: -1.00 -29.71 305.68 -6.95 -36.65 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -4.69 Total: 5.63 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -3.21 Total: -15.53 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.27 Total: -47.62 kcal Atomic # 8 Polarization: -2.94 SS G_CDS: 0.06 Total: -2.88 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -3.99 Total: 19.14 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.71 -6.95 -36.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320363734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.121 kcal (2) G-P(sol) polarization free energy of solvation -29.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds