Wall clock time and date at job start Mon Mar 30 2020 01:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.47526 * 174.99949 * 4 2 1 6 6 C 1.34511 * 125.78647 * 90.00358 * 5 4 2 7 7 C 1.41383 * 106.84099 * 180.02562 * 6 5 4 8 8 C 1.34518 * 106.84135 * 359.97438 * 7 6 5 9 9 O 1.34300 * 125.78814 * 269.69576 * 5 4 2 10 10 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 11 11 C 1.38820 * 119.99822 * 275.00232 * 10 2 1 12 12 C 1.39792 * 119.58613 * 359.97438 * 11 10 2 13 13 C 1.38600 * 119.49410 * 179.97438 * 12 11 10 14 14 C 1.38391 * 118.67584 * 0.02562 * 13 12 11 15 15 C 1.40557 * 119.15295 * 359.97438 * 14 13 12 16 16 C 1.41316 * 119.78402 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00053 * 0.02562 * 16 15 14 18 18 C 1.40029 * 119.99616 * 180.02562 * 16 15 14 19 19 N 1.30743 * 120.00428 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99722 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47201 * 60.00206 * 20 18 16 22 22 H 1.48497 * 109.47313 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47380 * 300.00094 * 20 18 16 24 24 N 1.31963 * 119.58029 * 179.72500 * 11 10 2 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 29 29 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 30 30 H 1.08000 * 126.58077 * 0.03562 * 6 5 4 31 31 H 1.08001 * 126.58126 * 179.97438 * 7 6 5 32 32 H 1.08000 * 125.79521 * 180.02562 * 8 7 6 33 33 H 0.97000 * 120.00117 * 94.99845 * 10 2 1 34 34 H 1.07998 * 120.25579 * 359.95601 * 12 11 10 35 35 H 1.07997 * 120.66242 * 180.02562 * 13 12 11 36 36 H 1.08008 * 120.42064 * 179.97438 * 14 13 12 37 37 H 0.96993 * 119.99989 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 6 4.4155 -1.4850 -0.7749 7 6 5.7105 -1.0010 -1.0710 8 6 5.5508 0.1356 -1.7725 9 8 4.2351 0.3614 -1.9208 10 7 2.0184 -0.6906 1.1962 11 6 2.1509 0.0019 2.3920 12 6 1.8164 1.3582 2.4448 13 6 1.9489 2.0477 3.6398 14 6 2.4125 1.3664 4.7517 15 6 2.7323 0.0027 4.6350 16 6 3.2062 -0.7061 5.7620 17 1 3.3212 -0.2000 6.7090 18 6 3.5267 -2.0647 5.6506 19 7 3.3880 -2.6773 4.5039 20 14 4.1525 -3.0017 7.1404 21 1 3.1295 -2.9615 8.2161 22 1 4.4182 -4.4129 6.7619 23 1 5.4079 -2.3757 7.6276 24 7 2.5864 -0.6296 3.4657 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.7516 -1.7716 -1.2056 29 1 1.6054 -0.2618 -2.1370 30 1 4.1741 -2.3814 -0.2230 31 1 6.6481 -1.4564 -0.7882 32 1 6.3456 0.7584 -2.1556 33 1 2.2491 -1.6318 1.1527 34 1 1.4577 1.8650 1.5612 35 1 1.6956 3.0957 3.7021 36 1 2.5269 1.8761 5.6970 37 1 3.6104 -3.6182 4.4268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320365416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:07 Heat of formation + Delta-G solvation = 49.362842 kcal Electronic energy + Delta-G solvation = -20473.233994 eV Core-core repulsion = 17410.097805 eV Total energy + Delta-G solvation = -3063.136189 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.30129 -38.40142 -36.41133 -33.50951 -32.71146 -31.84566 -30.36962 -29.61333 -27.97440 -26.07348 -25.26232 -21.88906 -21.58511 -21.30598 -20.29807 -19.75647 -17.34565 -17.14683 -16.34737 -15.75369 -15.20091 -14.83401 -14.52405 -14.21559 -13.65481 -13.28216 -13.03021 -12.71240 -12.58078 -12.53598 -12.33431 -11.94047 -11.79967 -11.69955 -11.35125 -11.13639 -10.97146 -10.83334 -10.53901 -10.32932 -9.87050 -9.63275 -9.45711 -8.85152 -8.17941 -7.86088 -7.45186 -6.44869 -6.28039 -4.42515 1.97413 2.91160 2.93004 3.12135 3.15111 3.20179 3.29777 3.34970 4.01362 4.20383 4.80372 4.89290 5.07144 5.19289 5.29296 5.46480 5.52010 5.70315 5.80031 5.94332 6.07978 6.12279 6.16437 6.22654 6.25008 6.35696 6.51320 6.68462 6.77135 6.91048 6.94787 7.00384 7.29559 7.37316 7.65570 7.86729 7.97949 8.21073 8.42340 8.74130 8.85353 9.18006 10.29992 10.45509 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.005735 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.878944 B = 4880.908914 C = 5655.134022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.164 3.836 3 H 0.078 0.922 4 C -0.045 4.045 5 C -0.006 4.006 6 C -0.195 4.195 7 C -0.208 4.208 8 C -0.054 4.054 9 O -0.180 6.180 10 N -0.729 5.729 11 C 0.416 3.584 12 C -0.368 4.368 13 C -0.032 4.032 14 C -0.319 4.319 15 C 0.293 3.707 16 C -0.436 4.436 17 H 0.081 0.919 18 C 0.072 3.928 19 N -0.716 5.716 20 Si 0.904 3.096 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.266 1.266 24 N -0.531 5.531 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.198 0.802 33 H 0.393 0.607 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.071 0.849 -11.502 11.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.057 3.943 3 H 0.096 0.904 4 C -0.083 4.083 5 C -0.056 4.056 6 C -0.214 4.214 7 C -0.227 4.227 8 C -0.121 4.121 9 O -0.076 6.076 10 N -0.365 5.365 11 C 0.176 3.824 12 C -0.394 4.394 13 C -0.057 4.057 14 C -0.342 4.342 15 C 0.166 3.834 16 C -0.468 4.468 17 H 0.099 0.901 18 C -0.153 4.153 19 N -0.337 5.337 20 Si 0.728 3.272 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.191 1.191 24 N -0.252 5.252 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.214 0.786 33 H 0.228 0.772 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.032 0.162 -11.894 11.895 hybrid contribution 0.456 0.034 0.868 0.981 sum 0.424 0.196 -11.026 11.036 Atomic orbital electron populations 1.22298 0.96024 1.02133 1.02050 1.20642 0.93069 0.96923 0.83700 0.90371 1.20472 0.85682 1.02910 0.99248 1.22247 0.94563 0.89128 0.99681 1.21561 0.92091 1.02776 1.04940 1.21813 0.98915 0.98109 1.03859 1.23874 0.83038 0.99958 1.05238 1.83962 1.18091 1.44560 1.61019 1.44157 1.74160 1.12006 1.06199 1.18483 0.89554 0.87514 0.86814 1.20633 1.25011 0.95228 0.98482 1.20589 0.95276 0.96867 0.92952 1.21520 1.17565 0.97083 0.98032 1.18186 0.87225 0.88054 0.89924 1.19527 1.37402 0.94004 0.95855 0.90057 1.26026 0.94454 0.98223 0.96563 1.70143 1.29927 1.09847 1.23806 0.86464 0.80089 0.78490 0.82146 1.19040 1.20394 1.19070 1.68219 1.23463 1.35954 0.97561 0.92565 0.91512 0.92536 0.88637 0.89236 0.83620 0.83848 0.78564 0.77170 0.89165 0.89099 0.88856 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.40 37.16 0.35 -1.91 16 2 C 0.16 2.53 2.25 -67.93 -0.15 2.38 16 3 H 0.08 1.33 6.43 -51.93 -0.33 0.99 16 4 C -0.05 -0.57 5.29 -27.88 -0.15 -0.72 16 5 C -0.01 -0.10 6.33 -35.63 -0.23 -0.32 16 6 C -0.19 -3.10 10.69 -39.70 -0.42 -3.52 16 7 C -0.21 -3.07 10.91 -39.70 -0.43 -3.50 16 8 C -0.05 -0.73 12.09 29.42 0.36 -0.37 16 9 O -0.18 -2.75 10.65 5.69 0.06 -2.69 16 10 N -0.73 -14.40 4.85 -53.90 -0.26 -14.66 16 11 C 0.42 10.20 7.63 -155.32 -1.18 9.02 16 12 C -0.37 -8.62 8.84 -38.87 -0.34 -8.96 16 13 C -0.03 -0.77 10.15 -39.39 -0.40 -1.17 16 14 C -0.32 -8.27 9.83 -38.65 -0.38 -8.65 16 15 C 0.29 8.31 6.55 -85.00 -0.56 7.75 16 16 C -0.44 -12.00 9.14 -37.74 -0.34 -12.35 16 17 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 18 C 0.07 1.88 5.50 -17.34 -0.10 1.78 16 19 N -0.72 -19.14 11.46 55.55 0.64 -18.50 16 20 Si 0.90 18.99 29.56 -169.99 -5.02 13.96 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 N -0.53 -14.77 7.89 -10.33 -0.08 -14.86 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.06 7.65 -51.93 -0.40 0.66 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.15 2.29 8.06 -52.49 -0.42 1.86 16 31 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.20 1.85 8.06 -52.49 -0.42 1.43 16 33 H 0.39 7.80 8.72 -40.82 -0.36 7.45 16 34 H 0.09 1.89 6.05 -52.49 -0.32 1.58 16 35 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.09 2.26 8.06 -52.48 -0.42 1.83 16 37 H 0.27 6.56 8.29 -40.82 -0.34 6.22 16 LS Contribution 318.16 15.07 4.79 4.79 Total: -1.00 -31.20 318.16 -8.62 -39.82 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -4.76 Total: 12.69 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -3.98 Total: -20.55 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.29 Total: -48.02 kcal Atomic # 8 Polarization: -2.75 SS G_CDS: 0.06 Total: -2.69 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.20 -8.62 -39.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320365416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.180 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds