Wall clock time and date at job start Mon Mar 30 2020 01:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50700 * 109.47526 * 174.99949 * 4 2 1 6 6 C 1.34511 * 125.78647 * 90.00358 * 5 4 2 7 7 C 1.41383 * 106.84099 * 180.02562 * 6 5 4 8 8 C 1.34518 * 106.84135 * 359.97438 * 7 6 5 9 9 O 1.34300 * 125.78814 * 269.69576 * 5 4 2 10 10 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 11 11 C 1.38820 * 119.99822 * 275.00232 * 10 2 1 12 12 C 1.39792 * 119.58613 * 359.97438 * 11 10 2 13 13 C 1.38600 * 119.49410 * 179.97438 * 12 11 10 14 14 C 1.38391 * 118.67584 * 0.02562 * 13 12 11 15 15 C 1.40557 * 119.15295 * 359.97438 * 14 13 12 16 16 C 1.41316 * 119.78402 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00053 * 0.02562 * 16 15 14 18 18 C 1.40029 * 119.99616 * 180.02562 * 16 15 14 19 19 N 1.30743 * 120.00428 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99722 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47201 * 60.00206 * 20 18 16 22 22 H 1.48497 * 109.47313 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47380 * 300.00094 * 20 18 16 24 24 N 1.31963 * 119.58029 * 179.72500 * 11 10 2 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 29 29 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 30 30 H 1.08000 * 126.58077 * 0.03562 * 6 5 4 31 31 H 1.08001 * 126.58126 * 179.97438 * 7 6 5 32 32 H 1.08000 * 125.79521 * 180.02562 * 8 7 6 33 33 H 0.97000 * 120.00117 * 94.99845 * 10 2 1 34 34 H 1.07998 * 120.25579 * 359.95601 * 12 11 10 35 35 H 1.07997 * 120.66242 * 180.02562 * 13 12 11 36 36 H 1.08008 * 120.42064 * 179.97438 * 14 13 12 37 37 H 0.96993 * 119.99989 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 6 4.4155 -1.4850 -0.7749 7 6 5.7105 -1.0010 -1.0710 8 6 5.5508 0.1356 -1.7725 9 8 4.2351 0.3614 -1.9208 10 7 2.0184 -0.6906 1.1962 11 6 2.1509 0.0019 2.3920 12 6 1.8164 1.3582 2.4448 13 6 1.9489 2.0477 3.6398 14 6 2.4125 1.3664 4.7517 15 6 2.7323 0.0027 4.6350 16 6 3.2062 -0.7061 5.7620 17 1 3.3212 -0.2000 6.7090 18 6 3.5267 -2.0647 5.6506 19 7 3.3880 -2.6773 4.5039 20 14 4.1525 -3.0017 7.1404 21 1 3.1295 -2.9615 8.2161 22 1 4.4182 -4.4129 6.7619 23 1 5.4079 -2.3757 7.6276 24 7 2.5864 -0.6296 3.4657 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.7516 -1.7716 -1.2056 29 1 1.6054 -0.2618 -2.1370 30 1 4.1741 -2.3814 -0.2230 31 1 6.6481 -1.4564 -0.7882 32 1 6.3456 0.7584 -2.1556 33 1 2.2491 -1.6318 1.1527 34 1 1.4577 1.8650 1.5612 35 1 1.6956 3.0957 3.7021 36 1 2.5269 1.8761 5.6970 37 1 3.6104 -3.6182 4.4268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320365416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:06 Heat of formation + Delta-G solvation = 31.667967 kcal Electronic energy + Delta-G solvation = -20474.001302 eV Core-core repulsion = 17410.097805 eV Total energy + Delta-G solvation = -3063.903496 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.42969 -40.19939 -37.90627 -35.38189 -33.91328 -33.37822 -32.18108 -31.00077 -29.67557 -27.40770 -26.95603 -23.53324 -23.18260 -22.63377 -21.70815 -21.12313 -19.21604 -18.34911 -17.99125 -17.02328 -16.68341 -16.51766 -16.13091 -15.58623 -15.38849 -14.80757 -14.51214 -14.25775 -13.89439 -13.74943 -13.62770 -13.51885 -13.22270 -12.91828 -12.82780 -12.71150 -12.59431 -12.42290 -12.18872 -11.90374 -11.70216 -11.26791 -10.80376 -10.64883 -9.81469 -9.41490 -9.30655 -8.24098 -8.20662 -6.45958 0.85325 1.09120 1.37411 1.40791 1.52422 1.59763 1.74628 2.14524 2.25321 2.68918 2.94617 3.74911 3.91779 4.08445 4.13862 4.20112 4.31530 4.42413 4.45968 4.57216 4.73887 4.80541 4.90939 4.97475 4.99222 5.01950 5.04481 5.08641 5.20050 5.29025 5.40740 5.42981 5.62550 5.74479 5.98828 6.10263 6.23572 6.24526 6.60247 6.86321 6.98855 7.26592 8.37737 8.53258 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.005735 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.878944 B = 4880.908914 C = 5655.134022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.161 3.839 3 H 0.065 0.935 4 C -0.037 4.037 5 C -0.015 4.015 6 C -0.222 4.222 7 C -0.234 4.234 8 C -0.046 4.046 9 O -0.188 6.188 10 N -0.722 5.722 11 C 0.403 3.597 12 C -0.368 4.368 13 C -0.032 4.032 14 C -0.349 4.349 15 C 0.259 3.741 16 C -0.473 4.473 17 H 0.084 0.916 18 C 0.027 3.973 19 N -0.749 5.749 20 Si 0.984 3.016 21 H -0.260 1.260 22 H -0.268 1.268 23 H -0.261 1.261 24 N -0.564 5.564 25 H 0.092 0.908 26 H 0.041 0.959 27 H 0.062 0.938 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.137 0.863 31 H 0.154 0.846 32 H 0.237 0.763 33 H 0.391 0.609 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.099 0.901 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.300 1.179 -12.768 12.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.083 0.917 4 C -0.075 4.075 5 C -0.065 4.065 6 C -0.241 4.241 7 C -0.254 4.254 8 C -0.113 4.113 9 O -0.085 6.085 10 N -0.357 5.357 11 C 0.161 3.839 12 C -0.394 4.394 13 C -0.056 4.056 14 C -0.372 4.372 15 C 0.132 3.868 16 C -0.505 4.505 17 H 0.102 0.898 18 C -0.195 4.195 19 N -0.371 5.371 20 Si 0.804 3.196 21 H -0.184 1.184 22 H -0.192 1.192 23 H -0.186 1.186 24 N -0.286 5.286 25 H 0.111 0.889 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.128 0.872 29 H 0.141 0.859 30 H 0.155 0.845 31 H 0.172 0.828 32 H 0.253 0.747 33 H 0.225 0.775 34 H 0.134 0.866 35 H 0.144 0.856 36 H 0.117 0.883 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.284 0.508 -13.212 13.224 hybrid contribution 0.517 0.000 1.115 1.229 sum 0.232 0.508 -12.096 12.109 Atomic orbital electron populations 1.22212 0.94119 1.02753 1.02582 1.20887 0.94378 0.96135 0.83037 0.91660 1.20530 0.84213 1.03861 0.98864 1.22623 0.95626 0.88841 0.99435 1.21737 0.93331 1.03230 1.05780 1.22114 0.99084 0.99178 1.04975 1.24642 0.83165 0.99670 1.03826 1.83971 1.18863 1.44594 1.61079 1.44361 1.73349 1.11880 1.06071 1.18919 0.88954 0.88486 0.87503 1.20966 1.24026 0.94987 0.99378 1.20991 0.93845 0.98486 0.92263 1.21667 1.19405 0.96795 0.99318 1.18666 0.88021 0.89401 0.90693 1.19882 1.39090 0.95451 0.96111 0.89802 1.26918 0.94146 0.98545 0.99867 1.70240 1.30484 1.10398 1.25956 0.85256 0.79403 0.77106 0.77831 1.18408 1.19231 1.18582 1.68204 1.24968 1.37094 0.98365 0.88934 0.93987 0.91923 0.87160 0.85878 0.84497 0.82779 0.74678 0.77512 0.86557 0.85635 0.88262 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 9.40 71.98 0.68 -3.22 16 2 C 0.16 4.69 2.25 44.99 0.10 4.79 16 3 H 0.07 2.09 6.43 -2.39 -0.02 2.07 16 4 C -0.04 -0.86 5.29 29.85 0.16 -0.70 16 5 C -0.02 -0.45 6.33 24.83 0.16 -0.29 16 6 C -0.22 -7.07 10.69 22.19 0.24 -6.83 16 7 C -0.23 -6.81 10.91 22.19 0.24 -6.57 16 8 C -0.05 -1.17 12.09 66.97 0.81 -0.36 16 9 O -0.19 -5.42 10.65 -2.56 -0.03 -5.45 16 10 N -0.72 -28.44 4.85 -324.45 -1.57 -30.02 16 11 C 0.40 19.95 7.63 133.42 1.02 20.96 16 12 C -0.37 -17.03 8.84 22.73 0.20 -16.82 16 13 C -0.03 -1.49 10.15 22.39 0.23 -1.26 16 14 C -0.35 -18.48 9.83 22.87 0.22 -18.26 16 15 C 0.26 15.22 6.55 40.18 0.26 15.48 16 16 C -0.47 -26.98 9.14 23.46 0.21 -26.76 16 17 H 0.08 4.50 7.85 -2.91 -0.02 4.48 16 18 C 0.03 1.43 5.50 85.29 0.47 1.90 16 19 N -0.75 -41.13 11.46 21.84 0.25 -40.88 16 20 Si 0.98 39.47 29.56 68.60 2.03 41.49 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 22 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 24 N -0.56 -32.36 7.89 -186.58 -1.47 -33.83 16 25 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.04 1.25 7.65 -2.39 -0.02 1.23 16 27 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 31 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 32 H 0.24 3.72 8.06 -2.91 -0.02 3.70 16 33 H 0.39 15.73 8.72 -92.71 -0.81 14.92 16 34 H 0.12 4.67 6.05 -2.91 -0.02 4.66 16 35 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 36 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 37 H 0.28 13.69 8.29 -92.71 -0.77 12.93 16 Total: -1.00 -69.99 318.16 4.48 -65.51 By element: Atomic # 1 Polarization: 40.83 SS G_CDS: 0.27 Total: 41.11 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 5.00 Total: -37.94 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -2.80 Total: -104.72 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.03 Total: -5.45 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.49 kcal Total: -69.99 4.48 -65.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320365416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.176 kcal (2) G-P(sol) polarization free energy of solvation -69.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds