Wall clock time and date at job start Mon Mar 30 2020 01:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47551 * 2 1 4 4 H 1.09004 * 109.46396 * 55.00328 * 3 2 1 5 5 C 1.52994 * 109.46904 * 295.00538 * 3 2 1 6 6 C 1.50701 * 109.47429 * 175.00121 * 3 2 1 7 7 N 1.30387 * 126.18346 * 59.95672 * 6 3 2 8 8 N 1.28662 * 109.52002 * 179.79952 * 7 6 3 9 9 C 1.31225 * 109.25212 * 0.39009 * 8 7 6 10 10 C 1.47869 * 126.38062 * 179.87997 * 9 8 7 11 11 C 1.39941 * 120.02582 * 179.97438 * 10 9 8 12 12 C 1.38329 * 120.35646 * 180.27936 * 11 10 9 13 13 C 1.37748 * 120.40992 * 359.77261 * 12 11 10 14 14 C 1.40772 * 120.03315 * 359.97438 * 13 12 11 15 15 C 1.41433 * 120.17661 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99816 * 334.91655 * 15 14 13 17 17 C 1.39922 * 119.99955 * 154.91535 * 15 14 13 18 18 N 1.30839 * 119.99932 * 342.60159 * 17 15 14 19 19 Si 1.86796 * 120.00198 * 162.59775 * 17 15 14 20 20 H 1.48497 * 109.46938 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47171 * 119.99986 * 19 17 15 22 22 H 1.48498 * 109.47441 * 239.99894 * 19 17 15 23 23 C 1.38958 * 120.02315 * 359.69448 * 10 9 8 24 24 O 1.34403 * 126.18974 * 240.00716 * 6 3 2 25 25 H 1.08995 * 109.46985 * 59.99359 * 1 2 3 26 26 H 1.09000 * 109.46887 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46332 * 299.99574 * 1 2 3 28 28 H 1.09004 * 109.46906 * 240.00011 * 2 1 3 29 29 H 1.08997 * 109.47505 * 120.00595 * 2 1 3 30 30 H 1.08998 * 109.47349 * 59.99825 * 5 3 2 31 31 H 1.09009 * 109.46586 * 179.97438 * 5 3 2 32 32 H 1.08991 * 109.47372 * 299.99465 * 5 3 2 33 33 H 1.08001 * 119.81904 * 0.02562 * 11 10 9 34 34 H 1.08010 * 119.79540 * 179.74829 * 12 11 10 35 35 H 1.07997 * 119.98156 * 179.97438 * 13 12 11 36 36 H 0.96996 * 119.99577 * 180.02562 * 18 17 15 37 37 H 1.07995 * 120.20247 * 359.97236 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 3.5420 1.4443 0.1238 7 7 4.3834 0.8920 -0.7052 8 7 5.5860 1.0910 -0.2934 9 6 5.5524 1.7753 0.8258 10 6 6.7192 2.2088 1.6241 11 6 6.5289 2.9377 2.8035 12 6 7.6157 3.3515 3.5526 13 6 8.8971 3.0472 3.1491 14 6 9.1078 2.3103 1.9683 15 6 10.4222 1.9957 1.5516 16 1 11.2499 2.6164 1.8614 17 6 10.6500 0.8804 0.7379 18 7 9.7392 -0.0535 0.6381 19 14 12.2545 0.7249 -0.2058 20 1 13.1110 1.9048 0.0763 21 1 12.9603 -0.5111 0.2179 22 1 11.9682 0.6571 -1.6613 23 6 8.0051 1.8876 1.2069 24 8 4.2564 2.0145 1.1091 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 0.5490 2.1253 -1.3968 31 1 1.9984 3.1544 -1.3070 32 1 2.0698 1.5876 -2.1491 33 1 5.5283 3.1818 3.1284 34 1 7.4585 3.9171 4.4592 35 1 9.7406 3.3742 3.7390 36 1 9.8974 -0.8268 0.0744 37 1 8.1565 1.3210 0.3001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322254262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:12 Heat of formation + Delta-G solvation = 14.254950 kcal Electronic energy + Delta-G solvation = -19932.773161 eV Core-core repulsion = 16868.114580 eV Total energy + Delta-G solvation = -3064.658581 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.18109 -39.51077 -37.70730 -37.20619 -35.69000 -33.42718 -31.66249 -31.18241 -29.61235 -27.36639 -26.36901 -25.18186 -24.05916 -22.75858 -22.21652 -21.23388 -19.49326 -18.37576 -18.15781 -17.38724 -16.59330 -16.44766 -16.33455 -15.81920 -15.21213 -14.68881 -14.63403 -14.27769 -13.84991 -13.67803 -13.48766 -13.18202 -13.08747 -12.95897 -12.85177 -12.73667 -12.68291 -12.55006 -12.21118 -12.18224 -11.84473 -11.68607 -11.63958 -11.53293 -11.22175 -10.86744 -9.49085 -9.28679 -8.69163 -6.42106 -0.32393 0.84000 0.95169 1.16370 1.38446 1.43427 1.54633 1.61562 2.18874 2.67823 2.79994 3.40169 3.59534 3.67953 3.85566 3.99811 4.15082 4.30153 4.41958 4.47215 4.48878 4.52894 4.62893 4.73380 4.85369 4.89956 4.99750 5.03582 5.10261 5.14165 5.15342 5.27600 5.33752 5.42310 5.46481 5.77193 5.90071 5.99172 6.20229 6.50890 6.83638 6.86044 7.25646 8.27357 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024523 B = 0.004367 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.505516 B = 6410.302901 C = 7225.793766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.011 3.989 4 H 0.123 0.877 5 C -0.141 4.141 6 C 0.157 3.843 7 N -0.311 5.311 8 N -0.321 5.321 9 C 0.227 3.773 10 C -0.038 4.038 11 C -0.208 4.208 12 C -0.086 4.086 13 C -0.212 4.212 14 C 0.074 3.926 15 C -0.489 4.489 16 H 0.090 0.910 17 C 0.032 3.968 18 N -0.822 5.822 19 Si 0.983 3.017 20 H -0.250 1.250 21 H -0.265 1.265 22 H -0.271 1.271 23 C -0.130 4.130 24 O -0.225 6.225 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.112 0.888 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.118 0.882 36 H 0.288 0.712 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.722 2.533 -0.327 14.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.009 4.009 4 H 0.141 0.859 5 C -0.199 4.199 6 C -0.055 4.055 7 N -0.157 5.157 8 N -0.167 5.167 9 C 0.019 3.981 10 C -0.040 4.040 11 C -0.228 4.228 12 C -0.103 4.103 13 C -0.232 4.232 14 C 0.072 3.928 15 C -0.518 4.518 16 H 0.108 0.892 17 C -0.184 4.184 18 N -0.447 5.447 19 Si 0.803 3.197 20 H -0.173 1.173 21 H -0.189 1.189 22 H -0.196 1.196 23 C -0.151 4.151 24 O -0.106 6.106 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.130 0.870 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.140 0.860 34 H 0.160 0.840 35 H 0.136 0.864 36 H 0.099 0.901 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.328 1.626 -1.487 14.496 hybrid contribution 0.592 0.127 0.488 0.778 sum -13.736 1.753 -0.999 13.883 Atomic orbital electron populations 1.21790 0.91721 1.03118 1.03468 1.21591 0.98624 0.92625 1.02447 1.20191 0.76962 1.00626 1.03089 0.85904 1.21922 1.04174 0.99806 0.93978 1.29101 0.99723 0.93165 0.83464 1.74194 0.95096 1.20756 1.25635 1.74775 1.14754 1.16941 1.10275 1.26075 0.82672 0.95694 0.93629 1.17421 0.86636 1.03923 0.96017 1.20719 0.99235 1.06288 0.96604 1.20865 0.91566 0.98744 0.99174 1.21479 0.97013 1.07279 0.97419 1.17884 0.93358 0.90839 0.90713 1.19905 0.93855 1.09982 1.28062 0.89242 1.26849 1.02206 0.93834 0.95485 1.69873 1.36575 1.07219 1.31034 0.85140 0.77043 0.79619 0.77871 1.17304 1.18941 1.19592 1.21368 0.90001 1.02836 1.00873 1.84824 1.17989 1.61563 1.46216 0.90598 0.91551 0.91257 0.91697 0.92774 0.86954 0.92615 0.92490 0.86001 0.83970 0.86426 0.90105 0.87100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.67 71.98 0.70 -1.00 16 2 C -0.11 -2.22 5.38 30.60 0.16 -2.05 16 3 C 0.01 0.24 2.86 -11.54 -0.03 0.21 16 4 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 5 C -0.14 -2.51 8.93 71.98 0.64 -1.86 16 6 C 0.16 5.47 6.98 88.32 0.62 6.08 16 7 N -0.31 -13.19 12.22 -165.34 -2.02 -15.21 16 8 N -0.32 -15.94 11.90 -166.30 -1.98 -17.92 16 9 C 0.23 10.75 7.99 87.34 0.70 11.45 16 10 C -0.04 -1.87 5.87 -20.14 -0.12 -1.99 16 11 C -0.21 -8.94 9.73 22.70 0.22 -8.72 16 12 C -0.09 -3.47 10.01 22.18 0.22 -3.25 16 13 C -0.21 -9.74 9.78 22.77 0.22 -9.52 16 14 C 0.07 3.96 5.57 -21.32 -0.12 3.84 16 15 C -0.49 -25.83 9.05 23.47 0.21 -25.62 16 16 H 0.09 4.43 7.90 -2.91 -0.02 4.41 16 17 C 0.03 1.62 5.14 85.25 0.44 2.06 16 18 N -0.82 -44.71 10.96 21.82 0.24 -44.47 16 19 Si 0.98 38.66 29.59 68.60 2.03 40.69 16 20 H -0.25 -9.33 7.11 99.48 0.71 -8.63 16 21 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 22 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 23 C -0.13 -7.11 8.33 23.00 0.19 -6.92 16 24 O -0.23 -9.02 10.66 -8.37 -0.09 -9.11 16 25 H 0.08 0.68 6.56 -2.39 -0.02 0.67 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.11 1.17 6.56 -2.39 -0.02 1.15 16 31 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.12 4.57 7.92 -2.91 -0.02 4.54 16 34 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 35 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 36 H 0.29 14.44 8.30 -92.71 -0.77 13.67 16 37 H 0.11 6.61 5.97 -2.91 -0.02 6.60 16 Total: -1.00 -65.81 318.28 3.31 -62.51 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 1.07 Total: 20.81 kcal Atomic # 6 Polarization: -41.34 SS G_CDS: 4.06 Total: -37.29 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -3.76 Total: -77.60 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.09 Total: -9.11 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -65.81 3.31 -62.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322254262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.760 kcal (2) G-P(sol) polarization free energy of solvation -65.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds