Wall clock time and date at job start Mon Mar 30 2020 01:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47085 * 2 1 4 4 H 1.08998 * 109.47522 * 305.00183 * 3 2 1 5 5 C 1.53001 * 109.46704 * 65.00455 * 3 2 1 6 6 C 1.50699 * 109.47304 * 184.99837 * 3 2 1 7 7 N 1.30387 * 126.18347 * 300.05287 * 6 3 2 8 8 N 1.28671 * 109.51690 * 179.72505 * 7 6 3 9 9 C 1.31224 * 109.25159 * 0.38151 * 8 7 6 10 10 C 1.47875 * 126.38028 * 179.88625 * 9 8 7 11 11 C 1.39928 * 120.02559 * 179.97438 * 10 9 8 12 12 C 1.38335 * 120.35607 * 180.27980 * 11 10 9 13 13 C 1.37745 * 120.40755 * 359.76766 * 12 11 10 14 14 C 1.40771 * 120.03610 * 359.97438 * 13 12 11 15 15 C 1.41433 * 120.17946 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99539 * 334.90405 * 15 14 13 17 17 C 1.39922 * 120.00121 * 154.91014 * 15 14 13 18 18 N 1.30839 * 119.99932 * 342.60792 * 17 15 14 19 19 Si 1.86796 * 120.00198 * 162.60408 * 17 15 14 20 20 H 1.48502 * 109.47129 * 89.99701 * 19 17 15 21 21 H 1.48496 * 109.47374 * 209.99929 * 19 17 15 22 22 H 1.48504 * 109.47132 * 330.00038 * 19 17 15 23 23 C 1.38968 * 120.02207 * 359.68929 * 10 9 8 24 24 O 1.34407 * 126.18727 * 120.00000 * 6 3 2 25 25 H 1.08996 * 109.47022 * 299.99516 * 1 2 3 26 26 H 1.09001 * 109.46891 * 59.99651 * 1 2 3 27 27 H 1.08996 * 109.47141 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46716 * 240.00282 * 2 1 3 29 29 H 1.09001 * 109.46891 * 120.00349 * 2 1 3 30 30 H 1.09010 * 109.47065 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.47180 * 299.99197 * 5 3 2 32 32 H 1.09000 * 109.47737 * 59.99990 * 5 3 2 33 33 H 1.08005 * 119.82281 * 359.97438 * 11 10 9 34 34 H 1.08000 * 119.79277 * 179.73896 * 12 11 10 35 35 H 1.07997 * 119.98489 * 179.97438 * 13 12 11 36 36 H 0.96996 * 119.99577 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.19761 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 1.6354 2.1264 1.3074 6 6 3.5420 1.4443 -0.1238 7 7 4.3833 0.8920 0.7051 8 7 5.5856 1.0826 0.2880 9 6 5.5523 1.7755 -0.8259 10 6 6.7190 2.2079 -1.6251 11 6 6.5290 2.9457 -2.7987 12 6 7.6153 3.3488 -3.5546 13 6 8.8961 3.0327 -3.1585 14 6 9.1069 2.2957 -1.9778 15 6 10.4207 1.9700 -1.5679 16 1 11.2142 1.9075 -2.2979 17 6 10.6925 1.7286 -0.2168 18 7 9.8484 2.1243 0.7012 19 14 12.2605 0.8411 0.2765 20 1 13.3440 1.8335 0.4921 21 1 12.0263 0.0832 1.5319 22 1 12.6576 -0.0988 -0.8024 23 6 8.0051 1.8867 -1.2079 24 8 4.2563 2.0147 -1.1091 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 1.9991 3.1540 1.3077 31 1 0.5490 2.1252 1.3970 32 1 2.0700 1.5874 2.1492 33 1 5.5288 3.1977 -3.1188 34 1 7.4580 3.9143 -4.4612 35 1 9.7391 3.3505 -3.7540 36 1 10.0370 1.9573 1.6379 37 1 8.1564 1.3217 -0.3000 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322254263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:15 Heat of formation + Delta-G solvation = 32.898518 kcal Electronic energy + Delta-G solvation = -19929.914668 eV Core-core repulsion = 16866.064532 eV Total energy + Delta-G solvation = -3063.850136 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.54200 -37.70335 -36.71370 -35.55349 -33.85741 -31.80244 -30.18133 -29.72701 -28.18842 -25.51416 -25.28764 -23.44495 -22.80883 -21.06618 -20.45754 -20.04085 -17.69450 -16.76361 -16.60544 -15.64574 -15.30879 -14.98771 -14.76055 -14.43568 -13.81136 -13.39022 -13.07192 -12.86021 -12.53017 -12.40061 -11.96504 -11.88571 -11.79462 -11.64509 -11.40074 -11.29893 -11.15462 -11.07826 -10.92192 -10.85602 -10.60628 -10.41556 -9.87906 -9.76013 -9.49302 -9.13865 -7.62389 -7.48617 -6.86069 -4.48987 1.36891 2.50672 2.70750 2.74200 3.05263 3.07308 3.12129 3.36477 3.87944 4.22372 4.50964 4.56891 4.74104 4.95747 5.08387 5.19003 5.25848 5.39450 5.47862 5.61942 5.63332 5.78592 5.83851 5.87414 5.99058 6.08978 6.12030 6.14769 6.23387 6.27670 6.65095 6.88779 6.96677 7.13291 7.27310 7.59764 7.74677 7.84867 8.05468 8.39035 8.71417 8.73324 8.90978 10.08415 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024716 B = 0.004355 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.609388 B = 6427.961983 C = 7241.047133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.014 3.986 4 H 0.096 0.904 5 C -0.145 4.145 6 C 0.130 3.870 7 N -0.281 5.281 8 N -0.292 5.292 9 C 0.246 3.754 10 C -0.029 4.029 11 C -0.215 4.215 12 C -0.092 4.092 13 C -0.208 4.208 14 C 0.102 3.898 15 C -0.457 4.457 16 H 0.084 0.916 17 C 0.074 3.926 18 N -0.782 5.782 19 Si 0.911 3.089 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.259 1.259 23 C -0.097 4.097 24 O -0.227 6.227 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.286 0.714 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.930 -1.296 -0.551 13.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.006 4.006 4 H 0.114 0.886 5 C -0.203 4.203 6 C -0.081 4.081 7 N -0.128 5.128 8 N -0.138 5.138 9 C 0.040 3.960 10 C -0.031 4.031 11 C -0.236 4.236 12 C -0.110 4.110 13 C -0.228 4.228 14 C 0.100 3.900 15 C -0.486 4.486 16 H 0.102 0.898 17 C -0.146 4.146 18 N -0.406 5.406 19 Si 0.735 3.265 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.183 1.183 23 C -0.118 4.118 24 O -0.107 6.107 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.511 -1.953 0.770 12.686 hybrid contribution 0.247 0.407 -0.705 0.851 sum -12.265 -1.546 0.064 12.362 Atomic orbital electron populations 1.21817 0.94739 1.02125 1.02137 1.21584 0.96183 0.94094 1.03590 1.19625 0.81131 0.98937 1.00905 0.88599 1.21897 1.01807 1.00746 0.95860 1.27723 0.97898 0.96923 0.85577 1.74248 0.95561 1.18932 1.24063 1.74834 1.12903 1.16673 1.09429 1.26272 0.81820 0.94438 0.93426 1.17222 0.86799 1.04211 0.94902 1.20331 0.97600 1.08240 0.97409 1.20422 0.92805 0.99730 0.98069 1.21165 0.95317 1.05116 1.01244 1.17515 0.93066 0.88875 0.90559 1.19579 0.94673 1.41325 0.92975 0.89832 1.25974 0.98710 0.93464 0.96465 1.69771 1.35371 1.32980 1.02493 0.86262 0.81135 0.80161 0.78976 1.19391 1.19862 1.18319 1.21566 0.88441 1.00440 1.01374 1.84822 1.18955 1.61380 1.45551 0.92078 0.92529 0.92235 0.91549 0.90384 0.92202 0.90792 0.91089 0.88594 0.88390 0.88193 0.90257 0.84369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.78 16 2 C -0.12 -1.22 5.38 -26.73 -0.14 -1.36 16 3 C 0.01 0.17 2.86 -91.77 -0.26 -0.09 16 4 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 5 C -0.15 -1.51 8.93 37.16 0.33 -1.18 16 6 C 0.13 2.30 6.98 -12.89 -0.09 2.21 16 7 N -0.28 -5.82 12.22 32.58 0.40 -5.42 16 8 N -0.29 -6.95 11.90 32.08 0.38 -6.57 16 9 C 0.25 5.70 7.99 -13.87 -0.11 5.59 16 10 C -0.03 -0.70 5.87 -105.05 -0.62 -1.32 16 11 C -0.21 -4.78 9.73 -38.91 -0.38 -5.16 16 12 C -0.09 -1.97 10.01 -39.73 -0.40 -2.37 16 13 C -0.21 -4.85 9.78 -38.81 -0.38 -5.23 16 14 C 0.10 2.65 5.57 -106.87 -0.59 2.05 16 15 C -0.46 -11.68 9.05 -37.74 -0.34 -12.03 16 16 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 17 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 18 N -0.78 -20.22 10.96 55.55 0.61 -19.61 16 19 Si 0.91 18.37 29.59 -169.99 -5.03 13.34 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 23 C -0.10 -2.55 8.33 -38.46 -0.32 -2.87 16 24 O -0.23 -4.60 10.66 4.06 0.04 -4.55 16 25 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.07 0.55 6.57 -51.93 -0.34 0.21 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.10 1.93 7.92 -52.48 -0.42 1.52 16 34 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 36 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 37 H 0.14 3.83 5.98 -52.49 -0.31 3.52 16 LS Contribution 318.28 15.07 4.80 4.80 Total: -1.00 -28.60 318.28 -6.60 -35.20 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.77 Total: 3.61 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -3.03 Total: -20.80 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 1.39 Total: -31.60 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: 0.04 Total: -4.55 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.60 -6.60 -35.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322254263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.103 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds