Wall clock time and date at job start Mon Mar 30 2020 01:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47085 * 2 1 4 4 H 1.08998 * 109.47522 * 305.00183 * 3 2 1 5 5 C 1.53001 * 109.46704 * 65.00455 * 3 2 1 6 6 C 1.50699 * 109.47304 * 184.99837 * 3 2 1 7 7 N 1.30387 * 126.18347 * 300.05287 * 6 3 2 8 8 N 1.28671 * 109.51690 * 179.72505 * 7 6 3 9 9 C 1.31224 * 109.25159 * 0.38151 * 8 7 6 10 10 C 1.47875 * 126.38028 * 179.88625 * 9 8 7 11 11 C 1.39928 * 120.02559 * 179.97438 * 10 9 8 12 12 C 1.38335 * 120.35607 * 180.27980 * 11 10 9 13 13 C 1.37745 * 120.40755 * 359.76766 * 12 11 10 14 14 C 1.40771 * 120.03610 * 359.97438 * 13 12 11 15 15 C 1.41433 * 120.17946 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99539 * 334.90405 * 15 14 13 17 17 C 1.39922 * 120.00121 * 154.91014 * 15 14 13 18 18 N 1.30839 * 119.99932 * 342.60792 * 17 15 14 19 19 Si 1.86796 * 120.00198 * 162.60408 * 17 15 14 20 20 H 1.48502 * 109.47129 * 89.99701 * 19 17 15 21 21 H 1.48496 * 109.47374 * 209.99929 * 19 17 15 22 22 H 1.48504 * 109.47132 * 330.00038 * 19 17 15 23 23 C 1.38968 * 120.02207 * 359.68929 * 10 9 8 24 24 O 1.34407 * 126.18727 * 120.00000 * 6 3 2 25 25 H 1.08996 * 109.47022 * 299.99516 * 1 2 3 26 26 H 1.09001 * 109.46891 * 59.99651 * 1 2 3 27 27 H 1.08996 * 109.47141 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46716 * 240.00282 * 2 1 3 29 29 H 1.09001 * 109.46891 * 120.00349 * 2 1 3 30 30 H 1.09010 * 109.47065 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.47180 * 299.99197 * 5 3 2 32 32 H 1.09000 * 109.47737 * 59.99990 * 5 3 2 33 33 H 1.08005 * 119.82281 * 359.97438 * 11 10 9 34 34 H 1.08000 * 119.79277 * 179.73896 * 12 11 10 35 35 H 1.07997 * 119.98489 * 179.97438 * 13 12 11 36 36 H 0.96996 * 119.99577 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.19761 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 1.6354 2.1264 1.3074 6 6 3.5420 1.4443 -0.1238 7 7 4.3833 0.8920 0.7051 8 7 5.5856 1.0826 0.2880 9 6 5.5523 1.7755 -0.8259 10 6 6.7190 2.2079 -1.6251 11 6 6.5290 2.9457 -2.7987 12 6 7.6153 3.3488 -3.5546 13 6 8.8961 3.0327 -3.1585 14 6 9.1069 2.2957 -1.9778 15 6 10.4207 1.9700 -1.5679 16 1 11.2142 1.9075 -2.2979 17 6 10.6925 1.7286 -0.2168 18 7 9.8484 2.1243 0.7012 19 14 12.2605 0.8411 0.2765 20 1 13.3440 1.8335 0.4921 21 1 12.0263 0.0832 1.5319 22 1 12.6576 -0.0988 -0.8024 23 6 8.0051 1.8867 -1.2079 24 8 4.2563 2.0147 -1.1091 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 1.9991 3.1540 1.3077 31 1 0.5490 2.1252 1.3970 32 1 2.0700 1.5874 2.1492 33 1 5.5288 3.1977 -3.1188 34 1 7.4580 3.9143 -4.4612 35 1 9.7391 3.3505 -3.7540 36 1 10.0370 1.9573 1.6379 37 1 8.1564 1.3217 -0.3000 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322254263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:15 Heat of formation + Delta-G solvation = 14.312168 kcal Electronic energy + Delta-G solvation = -19930.720632 eV Core-core repulsion = 16866.064532 eV Total energy + Delta-G solvation = -3064.656100 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.17950 -39.50958 -37.70632 -37.20469 -35.68890 -33.42551 -31.66129 -31.17994 -29.61235 -27.36413 -26.37065 -25.18080 -24.05696 -22.75730 -22.21484 -21.23231 -19.49153 -18.37246 -18.15697 -17.38570 -16.59158 -16.44811 -16.33571 -15.81799 -15.21148 -14.69140 -14.61828 -14.28000 -13.85336 -13.68136 -13.48333 -13.16519 -13.09422 -12.95806 -12.84069 -12.73318 -12.65337 -12.58406 -12.25773 -12.12463 -11.88571 -11.67138 -11.65762 -11.53536 -11.20497 -10.86071 -9.48922 -9.28577 -8.68946 -6.41901 -0.32290 0.84366 0.95558 1.16370 1.38328 1.43890 1.53747 1.61939 2.18915 2.68122 2.80005 3.40226 3.59716 3.68011 3.85649 3.99859 4.15208 4.30220 4.42058 4.47273 4.49083 4.52974 4.62742 4.73419 4.85353 4.89686 4.99881 5.03574 5.10306 5.14277 5.15505 5.27583 5.33787 5.42398 5.46782 5.77261 5.90155 5.99153 6.20353 6.50802 6.83626 6.86179 7.25650 8.27360 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024716 B = 0.004355 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.609388 B = 6427.961983 C = 7241.047133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C 0.011 3.989 4 H 0.123 0.877 5 C -0.142 4.142 6 C 0.157 3.843 7 N -0.311 5.311 8 N -0.321 5.321 9 C 0.227 3.773 10 C -0.038 4.038 11 C -0.208 4.208 12 C -0.086 4.086 13 C -0.212 4.212 14 C 0.075 3.925 15 C -0.490 4.490 16 H 0.090 0.910 17 C 0.032 3.968 18 N -0.821 5.821 19 Si 0.982 3.018 20 H -0.257 1.257 21 H -0.273 1.273 22 H -0.254 1.254 23 C -0.130 4.130 24 O -0.226 6.226 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.112 0.888 32 H 0.056 0.944 33 H 0.122 0.878 34 H 0.142 0.858 35 H 0.118 0.882 36 H 0.288 0.712 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.865 -0.783 -1.687 14.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.009 4.009 4 H 0.141 0.859 5 C -0.200 4.200 6 C -0.055 4.055 7 N -0.157 5.157 8 N -0.167 5.167 9 C 0.019 3.981 10 C -0.040 4.040 11 C -0.229 4.229 12 C -0.103 4.103 13 C -0.232 4.232 14 C 0.072 3.928 15 C -0.519 4.519 16 H 0.108 0.892 17 C -0.184 4.184 18 N -0.447 5.447 19 Si 0.803 3.197 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.177 1.177 23 C -0.151 4.151 24 O -0.106 6.106 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.075 0.925 33 H 0.140 0.860 34 H 0.160 0.840 35 H 0.136 0.864 36 H 0.099 0.901 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.462 -1.440 -0.367 14.538 hybrid contribution 0.605 0.285 -0.408 0.784 sum -13.856 -1.155 -0.774 13.926 Atomic orbital electron populations 1.21793 0.91772 1.03133 1.03434 1.21587 0.98576 0.92515 1.02518 1.20190 0.76969 1.00716 1.02994 0.85905 1.21929 1.04179 0.99767 0.94078 1.29101 0.99719 0.93290 0.83344 1.74197 0.95106 1.20999 1.25375 1.74777 1.14740 1.17149 1.10076 1.26076 0.82673 0.95605 0.93709 1.17421 0.86614 1.04231 0.95723 1.20716 0.99258 1.06638 0.96266 1.20863 0.91568 0.98846 0.99068 1.21477 0.97035 1.04310 1.00393 1.17875 0.93311 0.89763 0.91822 1.19878 0.95020 1.43126 0.93864 0.89225 1.26849 1.01918 0.93516 0.96078 1.69868 1.37490 1.34474 1.02822 0.85191 0.77101 0.78988 0.78444 1.18180 1.19809 1.17748 1.21368 0.89772 1.02429 1.01527 1.84826 1.17976 1.61607 1.46188 0.90691 0.91266 0.91490 0.92588 0.91677 0.92783 0.86915 0.92510 0.86008 0.83980 0.86428 0.90095 0.87094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.67 71.99 0.70 -0.96 16 2 C -0.11 -2.15 5.38 30.60 0.16 -1.99 16 3 C 0.01 0.24 2.86 -11.54 -0.03 0.21 16 4 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 5 C -0.14 -2.58 8.93 71.98 0.64 -1.94 16 6 C 0.16 5.47 6.98 88.32 0.62 6.08 16 7 N -0.31 -13.19 12.22 -165.33 -2.02 -15.21 16 8 N -0.32 -15.93 11.90 -166.30 -1.98 -17.91 16 9 C 0.23 10.75 7.99 87.34 0.70 11.45 16 10 C -0.04 -1.87 5.87 -20.14 -0.12 -1.99 16 11 C -0.21 -8.96 9.73 22.70 0.22 -8.74 16 12 C -0.09 -3.48 10.01 22.18 0.22 -3.25 16 13 C -0.21 -9.76 9.78 22.77 0.22 -9.53 16 14 C 0.07 3.98 5.57 -21.32 -0.12 3.86 16 15 C -0.49 -25.88 9.05 23.47 0.21 -25.67 16 16 H 0.09 4.42 7.90 -2.91 -0.02 4.40 16 17 C 0.03 1.63 5.14 85.25 0.44 2.07 16 18 N -0.82 -44.67 10.96 21.82 0.24 -44.43 16 19 Si 0.98 38.61 29.59 68.60 2.03 40.64 16 20 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 21 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 23 C -0.13 -7.12 8.33 23.00 0.19 -6.93 16 24 O -0.23 -9.03 10.66 -8.40 -0.09 -9.12 16 25 H 0.07 0.67 6.56 -2.39 -0.02 0.66 16 26 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.11 1.21 6.57 -2.39 -0.02 1.20 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.12 4.57 7.92 -2.91 -0.02 4.54 16 34 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 35 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 36 H 0.29 14.48 8.30 -92.71 -0.77 13.71 16 37 H 0.11 6.61 5.98 -2.91 -0.02 6.60 16 Total: -1.00 -65.74 318.28 3.31 -62.43 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 1.07 Total: 20.93 kcal Atomic # 6 Polarization: -41.38 SS G_CDS: 4.06 Total: -37.33 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -3.76 Total: -77.55 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.09 Total: -9.12 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -65.74 3.31 -62.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322254263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.739 kcal (2) G-P(sol) polarization free energy of solvation -65.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds