Wall clock time and date at job start Mon Mar 30 2020 01:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47889 * 2 1 4 4 C 1.50705 * 109.47104 * 239.99268 * 2 1 3 5 5 H 1.07996 * 120.00154 * 240.00299 * 4 2 1 6 6 C 1.37874 * 119.99631 * 60.00373 * 4 2 1 7 7 N 1.31516 * 120.00420 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00197 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46850 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47294 * 119.99543 * 8 6 4 11 11 H 1.48493 * 109.47451 * 240.00415 * 8 6 4 12 12 C 1.50705 * 109.46783 * 119.99973 * 2 1 3 13 13 N 1.30273 * 126.28603 * 59.99525 * 12 2 1 14 14 N 1.28672 * 109.38011 * 179.73021 * 13 12 2 15 15 C 1.30274 * 109.37813 * 0.44527 * 14 13 12 16 16 C 1.50701 * 126.27738 * 179.82454 * 15 14 13 17 17 C 1.52997 * 109.47212 * 89.69059 * 16 15 14 18 18 C 1.50697 * 109.47466 * 179.97438 * 17 16 15 19 19 C 1.38235 * 120.00282 * 269.72898 * 18 17 16 20 20 C 1.38231 * 120.00276 * 179.76303 * 19 18 17 21 21 C 1.38234 * 119.99846 * 0.50808 * 20 19 18 22 22 C 1.38241 * 119.99835 * 359.74567 * 21 20 19 23 23 C 1.38230 * 119.99983 * 0.02562 * 22 21 20 24 24 O 1.34358 * 107.43581 * 359.56207 * 15 14 13 25 25 H 1.09000 * 109.46916 * 300.00447 * 1 2 3 26 26 H 1.09000 * 109.46947 * 60.00236 * 1 2 3 27 27 H 1.08995 * 109.47559 * 180.02562 * 1 2 3 28 28 H 0.96992 * 120.00478 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47060 * 209.69114 * 16 15 14 30 30 H 1.09001 * 109.47380 * 329.69202 * 16 15 14 31 31 H 1.09002 * 109.47153 * 299.99998 * 17 16 15 32 32 H 1.08998 * 109.47533 * 59.99628 * 17 16 15 33 33 H 1.08008 * 119.99550 * 359.97438 * 19 18 17 34 34 H 1.07998 * 120.00386 * 180.23261 * 20 19 18 35 35 H 1.08002 * 120.00330 * 179.72114 * 21 20 19 36 36 H 1.07999 * 119.99721 * 179.97438 * 22 21 20 37 37 H 1.08007 * 119.99843 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6992 -0.2396 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3224 -1.1198 -4.0079 9 1 3.1473 -2.2867 -3.6036 10 1 1.1677 -1.5870 -4.8163 11 1 3.1472 -0.1862 -4.8160 12 6 2.0322 -0.7104 1.2305 13 7 1.7941 -1.9489 1.5569 14 7 2.3855 -2.2191 2.6673 15 6 3.0132 -1.1594 3.0917 16 6 3.8258 -1.0511 4.3563 17 6 5.2786 -1.4309 4.0630 18 6 6.0914 -1.3220 5.3273 19 6 6.7157 -0.1309 5.6473 20 6 7.4572 -0.0295 6.8094 21 6 7.5831 -1.1224 7.6465 22 6 6.9631 -2.3151 7.3239 23 6 6.2177 -2.4150 6.1641 24 8 2.8079 -0.1827 2.1923 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7090 1.1612 -3.4844 29 1 3.7858 -0.0269 4.7272 30 1 3.4186 -1.7263 5.1089 31 1 5.3186 -2.4551 3.6921 32 1 5.6859 -0.7559 3.3104 33 1 6.6212 0.7216 4.9908 34 1 7.9419 0.9022 7.0613 35 1 8.1661 -1.0446 8.5523 36 1 7.0618 -3.1691 7.9777 37 1 5.7336 -3.3470 5.9119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326988641.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:44 Heat of formation + Delta-G solvation = 40.702838 kcal Electronic energy + Delta-G solvation = -19463.834111 eV Core-core repulsion = 16400.322396 eV Total energy + Delta-G solvation = -3063.511715 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.41222 -39.49395 -35.36154 -35.22324 -34.46114 -31.68176 -31.08391 -30.44671 -27.95738 -25.36636 -24.72510 -23.42696 -22.76128 -21.74523 -20.95361 -20.41419 -17.09253 -16.74111 -16.42477 -16.12468 -15.53555 -15.39901 -14.91728 -14.55343 -13.93380 -13.57076 -13.44252 -13.25963 -12.97155 -12.72885 -12.22778 -11.82384 -11.61343 -11.50476 -11.24020 -11.18010 -11.04007 -11.00681 -10.98680 -10.67435 -10.47265 -10.25997 -9.97660 -9.34763 -9.12034 -8.96107 -8.58151 -8.50260 -6.21218 -4.28630 1.12250 1.20259 1.95214 3.00697 3.19880 3.23716 3.31732 3.39111 3.59176 4.29586 4.39705 4.62910 4.74594 4.81644 4.93177 4.98013 5.07568 5.11492 5.28462 5.32051 5.37560 5.50303 5.68847 5.77267 5.86958 5.96854 6.08540 6.23109 6.27667 6.31065 6.44287 6.46172 6.62094 6.80542 6.82739 6.90956 7.38964 7.64946 7.82487 8.02778 8.72102 9.15187 9.36635 10.85580 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031273 B = 0.003289 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.120047 B = 8511.837963 C = 8748.411743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.129 3.871 3 H 0.057 0.943 4 C -0.511 4.511 5 H 0.065 0.935 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.906 3.094 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.282 1.282 12 C 0.222 3.778 13 N -0.306 5.306 14 N -0.289 5.289 15 C 0.114 3.886 16 C -0.005 4.005 17 C -0.081 4.081 18 C -0.078 4.078 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.120 4.120 23 C -0.114 4.114 24 O -0.234 6.234 25 H 0.013 0.987 26 H 0.100 0.900 27 H 0.044 0.956 28 H 0.266 0.734 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.530 -0.792 17.336 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.109 3.891 3 H 0.075 0.925 4 C -0.550 4.550 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.733 3.267 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.208 1.208 12 C 0.013 3.987 13 N -0.151 5.151 14 N -0.136 5.136 15 C -0.097 4.097 16 C -0.044 4.044 17 C -0.119 4.119 18 C -0.078 4.078 19 C -0.133 4.133 20 C -0.138 4.138 21 C -0.144 4.144 22 C -0.138 4.138 23 C -0.132 4.132 24 O -0.114 6.114 25 H 0.032 0.968 26 H 0.119 0.881 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.122 0.878 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.974 -1.892 17.133 19.915 hybrid contribution 0.777 0.762 -0.730 1.310 sum 10.751 -1.131 16.403 19.645 Atomic orbital electron populations 1.21808 0.94960 1.01008 1.01191 1.17770 0.93814 0.95300 0.82173 0.92516 1.20906 1.32476 1.12876 0.88701 0.91720 1.24895 0.94699 0.94920 0.99078 1.69865 1.36057 1.22561 1.24092 0.86294 0.78771 0.79618 0.82007 1.19539 1.20609 1.20779 1.29652 0.87564 0.90356 0.91136 1.74383 1.20867 1.13054 1.06763 1.74257 1.09195 1.23870 1.06319 1.27510 1.02638 0.83861 0.95736 1.19904 0.91790 1.04434 0.88274 1.20631 0.92377 1.03914 0.94966 1.19816 0.97920 0.93903 0.96204 1.21142 0.97474 0.97416 0.97246 1.21152 0.99157 0.98699 0.94777 1.21158 1.00140 0.93402 0.99720 1.21155 0.97733 0.97820 0.97092 1.21141 0.99009 0.98533 0.94508 1.84807 1.55561 1.41855 1.29224 0.96773 0.88133 0.93683 0.92449 0.89019 0.87762 0.89816 0.90131 0.85809 0.86099 0.86278 0.86099 0.85734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.95 37.16 0.33 -2.81 16 2 C 0.13 3.26 2.77 -92.92 -0.26 3.01 16 3 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 4 C -0.51 -13.94 8.55 -34.44 -0.29 -14.23 16 5 H 0.06 1.82 7.74 -52.49 -0.41 1.41 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.09 11.32 55.43 0.63 -23.46 16 8 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.22 5.29 6.92 -12.94 -0.09 5.20 16 13 N -0.31 -7.42 12.22 32.55 0.40 -7.02 16 14 N -0.29 -6.19 12.22 32.55 0.40 -5.79 16 15 C 0.11 2.10 7.73 -12.94 -0.10 2.00 16 16 C -0.01 -0.07 5.82 -27.88 -0.16 -0.23 16 17 C -0.08 -0.92 5.33 -27.89 -0.15 -1.07 16 18 C -0.08 -0.80 5.13 -104.63 -0.54 -1.34 16 19 C -0.11 -1.10 9.70 -39.58 -0.38 -1.49 16 20 C -0.12 -1.03 10.05 -39.59 -0.40 -1.43 16 21 C -0.13 -1.04 10.05 -39.58 -0.40 -1.44 16 22 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 23 C -0.11 -1.09 9.70 -39.59 -0.38 -1.47 16 24 O -0.23 -4.95 10.87 5.41 0.06 -4.89 16 25 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 27 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 32 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 33 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 LS Contribution 322.84 15.07 4.87 4.87 Total: -1.00 -30.02 322.84 -6.91 -36.93 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -4.92 Total: -1.51 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -3.31 Total: -15.05 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 1.42 Total: -36.27 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: 0.06 Total: -4.89 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.02 -6.91 -36.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326988641.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.633 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds