Wall clock time and date at job start Mon Mar 30 2020 01:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.47889 * 2 1 4 4 C 1.50705 * 109.47104 * 239.99268 * 2 1 3 5 5 H 1.07996 * 120.00154 * 240.00299 * 4 2 1 6 6 C 1.37874 * 119.99631 * 60.00373 * 4 2 1 7 7 N 1.31516 * 120.00420 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00197 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46850 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47294 * 119.99543 * 8 6 4 11 11 H 1.48493 * 109.47451 * 240.00415 * 8 6 4 12 12 C 1.50705 * 109.46783 * 119.99973 * 2 1 3 13 13 N 1.30273 * 126.28603 * 59.99525 * 12 2 1 14 14 N 1.28672 * 109.38011 * 179.73021 * 13 12 2 15 15 C 1.30274 * 109.37813 * 0.44527 * 14 13 12 16 16 C 1.50701 * 126.27738 * 179.82454 * 15 14 13 17 17 C 1.52997 * 109.47212 * 89.69059 * 16 15 14 18 18 C 1.50697 * 109.47466 * 179.97438 * 17 16 15 19 19 C 1.38235 * 120.00282 * 269.72898 * 18 17 16 20 20 C 1.38231 * 120.00276 * 179.76303 * 19 18 17 21 21 C 1.38234 * 119.99846 * 0.50808 * 20 19 18 22 22 C 1.38241 * 119.99835 * 359.74567 * 21 20 19 23 23 C 1.38230 * 119.99983 * 0.02562 * 22 21 20 24 24 O 1.34358 * 107.43581 * 359.56207 * 15 14 13 25 25 H 1.09000 * 109.46916 * 300.00447 * 1 2 3 26 26 H 1.09000 * 109.46947 * 60.00236 * 1 2 3 27 27 H 1.08995 * 109.47559 * 180.02562 * 1 2 3 28 28 H 0.96992 * 120.00478 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47060 * 209.69114 * 16 15 14 30 30 H 1.09001 * 109.47380 * 329.69202 * 16 15 14 31 31 H 1.09002 * 109.47153 * 299.99998 * 17 16 15 32 32 H 1.08998 * 109.47533 * 59.99628 * 17 16 15 33 33 H 1.08008 * 119.99550 * 359.97438 * 19 18 17 34 34 H 1.07998 * 120.00386 * 180.23261 * 20 19 18 35 35 H 1.08002 * 120.00330 * 179.72114 * 21 20 19 36 36 H 1.07999 * 119.99721 * 179.97438 * 22 21 20 37 37 H 1.08007 * 119.99843 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6992 -0.2396 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3224 -1.1198 -4.0079 9 1 3.1473 -2.2867 -3.6036 10 1 1.1677 -1.5870 -4.8163 11 1 3.1472 -0.1862 -4.8160 12 6 2.0322 -0.7104 1.2305 13 7 1.7941 -1.9489 1.5569 14 7 2.3855 -2.2191 2.6673 15 6 3.0132 -1.1594 3.0917 16 6 3.8258 -1.0511 4.3563 17 6 5.2786 -1.4309 4.0630 18 6 6.0914 -1.3220 5.3273 19 6 6.7157 -0.1309 5.6473 20 6 7.4572 -0.0295 6.8094 21 6 7.5831 -1.1224 7.6465 22 6 6.9631 -2.3151 7.3239 23 6 6.2177 -2.4150 6.1641 24 8 2.8079 -0.1827 2.1923 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7090 1.1612 -3.4844 29 1 3.7858 -0.0269 4.7272 30 1 3.4186 -1.7263 5.1089 31 1 5.3186 -2.4551 3.6921 32 1 5.6859 -0.7559 3.3104 33 1 6.6212 0.7216 4.9908 34 1 7.9419 0.9022 7.0613 35 1 8.1661 -1.0446 8.5523 36 1 7.0618 -3.1691 7.9777 37 1 5.7336 -3.3470 5.9119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326988641.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:43 Heat of formation + Delta-G solvation = 21.719295 kcal Electronic energy + Delta-G solvation = -19464.657300 eV Core-core repulsion = 16400.322396 eV Total energy + Delta-G solvation = -3064.334903 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.11221 -40.18484 -37.08205 -36.85565 -35.77859 -33.43212 -31.76105 -31.73281 -29.34401 -27.40260 -25.86974 -25.23689 -23.42363 -23.08405 -22.29817 -21.81613 -18.69279 -18.17562 -18.00883 -17.52076 -16.88187 -16.40159 -16.24581 -15.63648 -15.41044 -14.79008 -14.56480 -14.29223 -14.14908 -13.81819 -13.63780 -13.36496 -13.13482 -12.99249 -12.86190 -12.83390 -12.60846 -12.44576 -12.31042 -12.12681 -11.93528 -11.78779 -11.70022 -11.30931 -10.60783 -10.33271 -9.78279 -9.60138 -8.25287 -6.40191 0.25277 0.48857 0.54013 1.38463 1.41092 1.44967 1.47903 1.57029 2.39239 2.87810 3.01997 3.04736 3.62600 3.79667 3.93978 4.06474 4.09164 4.22284 4.32561 4.33848 4.40029 4.53877 4.65814 4.68155 4.71263 4.80192 4.87268 4.93173 4.98251 4.99740 5.18299 5.22030 5.37251 5.61356 5.62900 5.66938 5.73765 5.78695 6.02121 6.15492 6.61306 7.27879 7.43932 8.81197 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031273 B = 0.003289 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.120047 B = 8511.837963 C = 8748.411743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.130 3.870 3 H 0.045 0.955 4 C -0.533 4.533 5 H 0.047 0.953 6 C 0.029 3.971 7 N -0.906 5.906 8 Si 0.965 3.035 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.271 1.271 12 C 0.204 3.796 13 N -0.327 5.327 14 N -0.318 5.318 15 C 0.144 3.856 16 C -0.003 4.003 17 C -0.072 4.072 18 C -0.090 4.090 19 C -0.126 4.126 20 C -0.126 4.126 21 C -0.128 4.128 22 C -0.126 4.126 23 C -0.125 4.125 24 O -0.238 6.238 25 H 0.034 0.966 26 H 0.086 0.914 27 H 0.035 0.965 28 H 0.271 0.729 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.734 -0.720 18.745 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.110 3.890 3 H 0.062 0.938 4 C -0.572 4.572 5 H 0.065 0.935 6 C -0.172 4.172 7 N -0.544 5.544 8 Si 0.790 3.210 9 H -0.201 1.201 10 H -0.198 1.198 11 H -0.196 1.196 12 C -0.006 4.006 13 N -0.172 5.172 14 N -0.163 5.163 15 C -0.068 4.068 16 C -0.041 4.041 17 C -0.111 4.111 18 C -0.090 4.090 19 C -0.144 4.144 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.144 4.144 23 C -0.143 4.143 24 O -0.118 6.118 25 H 0.053 0.947 26 H 0.104 0.896 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.133 0.867 30 H 0.143 0.857 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.147 0.853 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.174 -1.828 18.556 21.738 hybrid contribution 0.493 0.749 -1.012 1.352 sum 11.667 -1.079 17.545 21.098 Atomic orbital electron populations 1.21636 0.94284 1.00403 1.01418 1.17580 0.94431 0.94481 0.82499 0.93750 1.21012 1.33111 1.12841 0.90208 0.93496 1.25589 0.94687 0.95527 1.01427 1.69934 1.36221 1.23155 1.25041 0.85392 0.78418 0.78456 0.78737 1.20142 1.19782 1.19625 1.29214 0.89146 0.90499 0.91768 1.74311 1.21625 1.13301 1.07990 1.74203 1.10937 1.25079 1.06129 1.28705 1.00202 0.82202 0.95658 1.20326 0.91579 1.06565 0.85665 1.20500 0.91672 1.03153 0.95742 1.19693 0.98756 0.94701 0.95858 1.21312 0.97778 0.97417 0.97930 1.21440 0.98837 0.99760 0.94373 1.21508 0.99728 0.93043 1.00338 1.21446 0.97208 0.98767 0.96953 1.21312 0.99464 0.98600 0.94926 1.84809 1.55257 1.42465 1.29308 0.94709 0.89581 0.94571 0.91926 0.86662 0.85714 0.90655 0.90822 0.85277 0.84233 0.84033 0.84176 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 8.95 71.98 0.64 -5.13 16 2 C 0.13 6.70 2.77 -12.28 -0.03 6.67 16 3 H 0.04 2.35 8.14 -2.39 -0.02 2.33 16 4 C -0.53 -29.70 8.55 25.60 0.22 -29.48 16 5 H 0.05 2.72 7.74 -2.91 -0.02 2.69 16 6 C 0.03 1.53 5.30 84.65 0.45 1.98 16 7 N -0.91 -49.25 11.32 21.45 0.24 -49.01 16 8 Si 0.97 42.95 29.54 68.60 2.03 44.98 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 12 C 0.20 9.88 6.92 88.34 0.61 10.49 16 13 N -0.33 -16.12 12.22 -165.50 -2.02 -18.14 16 14 N -0.32 -13.59 12.22 -165.51 -2.02 -15.61 16 15 C 0.14 5.18 7.73 88.34 0.68 5.86 16 16 C 0.00 -0.07 5.82 29.85 0.17 0.10 16 17 C -0.07 -1.57 5.33 29.85 0.16 -1.41 16 18 C -0.09 -1.70 5.13 -19.87 -0.10 -1.80 16 19 C -0.13 -2.20 9.70 22.27 0.22 -1.98 16 20 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 21 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 22 C -0.13 -1.85 10.05 22.27 0.22 -1.62 16 23 C -0.13 -2.16 9.70 22.27 0.22 -1.95 16 24 O -0.24 -10.03 10.87 -3.57 -0.04 -10.07 16 25 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.09 4.41 6.07 -2.39 -0.01 4.39 16 27 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 29 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.07 1.75 8.09 -2.39 -0.02 1.73 16 32 H 0.07 1.68 8.08 -2.39 -0.02 1.67 16 33 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 35 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 36 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -64.37 322.84 3.15 -61.22 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 1.06 Total: 8.09 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 3.91 Total: -21.45 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -3.80 Total: -82.76 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.04 Total: -10.07 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -64.37 3.15 -61.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326988641.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.936 kcal (2) G-P(sol) polarization free energy of solvation -64.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds