Wall clock time and date at job start Mon Mar 30 2020 01:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 13 13 N 1.30272 * 126.28108 * 300.02352 * 12 2 1 14 14 N 1.28661 * 109.38222 * 179.97438 * 13 12 2 15 15 C 1.30280 * 109.37971 * 359.97438 * 14 13 12 16 16 C 1.50702 * 126.28215 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.47029 * 89.97773 * 16 15 14 18 18 C 1.50693 * 109.47216 * 179.97438 * 17 16 15 19 19 C 1.38240 * 120.00042 * 269.73295 * 18 17 16 20 20 C 1.38236 * 119.99757 * 179.76574 * 19 18 17 21 21 C 1.38232 * 120.00217 * 0.50583 * 20 19 18 22 22 C 1.38231 * 120.00149 * 359.74472 * 21 20 19 23 23 C 1.38237 * 119.99824 * 0.02562 * 22 21 20 24 24 O 1.34357 * 126.28163 * 119.71598 * 12 2 1 25 25 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 26 26 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.46908 * 209.97881 * 16 15 14 30 30 H 1.09003 * 109.46986 * 329.98242 * 16 15 14 31 31 H 1.09001 * 109.47405 * 300.00353 * 17 16 15 32 32 H 1.08996 * 109.46932 * 60.00003 * 17 16 15 33 33 H 1.07997 * 119.99843 * 359.97438 * 19 18 17 34 34 H 1.08000 * 119.99794 * 180.22344 * 20 19 18 35 35 H 1.07999 * 120.00056 * 179.72313 * 21 20 19 36 36 H 1.07998 * 120.00325 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.00306 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 6 2.0323 -0.7104 -1.2305 13 7 1.7938 -1.9488 -1.5570 14 7 2.3801 -2.2174 -2.6703 15 6 3.0122 -1.1593 -3.0923 16 6 3.8248 -1.0510 -4.3568 17 6 2.9218 -0.5990 -5.5062 18 6 3.7344 -0.4901 -6.7706 19 6 4.3484 0.7047 -7.0968 20 6 5.0979 0.8032 -8.2542 21 6 5.2248 -0.2900 -9.0906 22 6 4.6065 -1.4833 -8.7670 23 6 3.8609 -1.5832 -7.6073 24 8 2.8035 -0.1812 -2.1950 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9040 -0.5274 4.4375 29 1 4.6234 -0.3230 -4.2142 30 1 4.2572 -2.0228 -4.5951 31 1 2.1231 -1.3269 -5.6487 32 1 2.4893 0.3727 -5.2679 33 1 4.2454 1.5602 -6.4458 34 1 5.5806 1.7356 -8.5073 35 1 5.8066 -0.2118 -9.9971 36 1 4.7053 -2.3373 -9.4207 37 1 3.3775 -2.5153 -7.3546 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326988643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:47 Heat of formation + Delta-G solvation = 50.929842 kcal Electronic energy + Delta-G solvation = -19486.198640 eV Core-core repulsion = 16423.130401 eV Total energy + Delta-G solvation = -3063.068239 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.54197 -39.54100 -35.49349 -35.36907 -34.58797 -31.89752 -31.12670 -30.82963 -28.25435 -25.36428 -24.82998 -23.63962 -22.80844 -21.85167 -21.02296 -20.48177 -17.21101 -16.90373 -16.62879 -16.26424 -15.61441 -15.51930 -15.06511 -14.63882 -14.03746 -13.66027 -13.49244 -13.38978 -13.15183 -12.87951 -12.40229 -12.29400 -11.82517 -11.73666 -11.53959 -11.37730 -11.28482 -11.15866 -11.06824 -10.79434 -10.50494 -10.10271 -9.73707 -9.43463 -9.16222 -9.03202 -8.78169 -8.62134 -6.23506 -4.27585 1.07601 1.16014 1.83157 2.86767 3.09749 3.16873 3.24006 3.28747 3.54481 4.23498 4.26204 4.57263 4.68092 4.77245 4.86459 4.91100 5.00197 5.03783 5.20430 5.27105 5.30361 5.41203 5.59095 5.72464 5.80992 5.88079 5.93906 6.01370 6.13052 6.15100 6.22625 6.27174 6.30826 6.40394 6.55331 6.61629 6.76108 7.11124 7.35968 8.27081 8.79432 9.03744 9.31076 10.88737 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.042535 B = 0.003218 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.125280 B = 8698.468858 C = 8928.341695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.100 3.900 3 H 0.057 0.943 4 C -0.518 4.518 5 H 0.083 0.917 6 C 0.079 3.921 7 N -0.886 5.886 8 Si 0.885 3.115 9 H -0.273 1.273 10 H -0.292 1.292 11 H -0.264 1.264 12 C 0.225 3.775 13 N -0.295 5.295 14 N -0.287 5.287 15 C 0.121 3.879 16 C -0.007 4.007 17 C -0.079 4.079 18 C -0.080 4.080 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.113 4.113 24 O -0.233 6.233 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.069 0.931 28 H 0.269 0.731 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.969 4.239 -22.742 23.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.080 3.920 3 H 0.075 0.925 4 C -0.556 4.556 5 H 0.101 0.899 6 C -0.124 4.124 7 N -0.523 5.523 8 Si 0.714 3.286 9 H -0.199 1.199 10 H -0.219 1.219 11 H -0.189 1.189 12 C 0.015 3.985 13 N -0.140 5.140 14 N -0.134 5.134 15 C -0.091 4.091 16 C -0.046 4.046 17 C -0.117 4.117 18 C -0.080 4.080 19 C -0.133 4.133 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.138 4.138 23 C -0.131 4.131 24 O -0.113 6.113 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.124 0.876 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.513 3.008 -22.464 22.935 hybrid contribution -0.029 1.883 0.222 1.896 sum 3.483 4.890 -22.242 23.039 Atomic orbital electron populations 1.22166 0.95877 1.02642 0.99566 1.18062 0.92922 0.95910 0.85103 0.92488 1.20652 1.33622 1.14216 0.87095 0.89926 1.24874 0.95485 0.96736 0.95350 1.69853 1.44483 1.39881 0.98060 0.86886 0.80842 0.83319 0.77516 1.19942 1.21872 1.18942 1.28805 0.88628 0.90223 0.90836 1.74407 1.20621 1.12547 1.06404 1.74299 1.09146 1.23822 1.06152 1.27553 1.02541 0.83665 0.95294 1.19948 0.95418 1.04845 0.84394 1.20619 0.97227 1.03350 0.90545 1.19800 0.98269 0.93904 0.96017 1.21130 0.97467 0.97462 0.97224 1.21155 0.99034 0.98733 0.94862 1.21163 1.00058 0.93397 0.99724 1.21162 0.97654 0.97821 0.97122 1.21144 0.99086 0.98420 0.94493 1.84779 1.55672 1.41714 1.29142 0.92540 0.94616 0.91164 0.92073 0.88846 0.87553 0.89813 0.90267 0.85851 0.86088 0.86246 0.86058 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.66 37.16 0.32 -2.76 16 2 C 0.10 2.37 2.36 -92.92 -0.22 2.15 16 3 H 0.06 1.29 7.20 -51.93 -0.37 0.92 16 4 C -0.52 -14.44 9.13 -34.44 -0.31 -14.76 16 5 H 0.08 2.58 7.98 -52.49 -0.42 2.16 16 6 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 8 Si 0.89 20.60 24.37 -169.99 -4.14 16.45 16 9 H -0.27 -6.14 6.87 56.52 0.39 -5.75 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.26 -5.75 6.53 56.52 0.37 -5.38 16 12 C 0.22 5.13 6.92 -12.94 -0.09 5.04 16 13 N -0.29 -6.97 12.22 32.55 0.40 -6.57 16 14 N -0.29 -5.97 12.22 32.55 0.40 -5.58 16 15 C 0.12 2.14 7.73 -12.94 -0.10 2.04 16 16 C -0.01 -0.09 5.82 -27.88 -0.16 -0.25 16 17 C -0.08 -0.82 5.33 -27.88 -0.15 -0.96 16 18 C -0.08 -0.76 5.13 -104.62 -0.54 -1.30 16 19 C -0.11 -1.03 9.70 -39.58 -0.38 -1.41 16 20 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 21 C -0.13 -0.98 10.05 -39.59 -0.40 -1.38 16 22 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 23 C -0.11 -1.02 9.70 -39.58 -0.38 -1.40 16 24 O -0.23 -4.69 10.87 5.41 0.06 -4.63 16 25 H 0.06 1.21 3.27 -51.93 -0.17 1.04 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 32 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 36 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 316.02 15.07 4.76 4.76 Total: -1.00 -31.79 316.02 -5.85 -37.64 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -4.79 Total: -0.84 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -3.31 Total: -15.61 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 1.57 Total: -37.77 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: 0.06 Total: -4.63 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.14 Total: 16.45 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.79 -5.85 -37.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326988643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.568 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds