Wall clock time and date at job start Mon Mar 30 2020 01:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 13 13 N 1.30272 * 126.28108 * 300.02352 * 12 2 1 14 14 N 1.28661 * 109.38222 * 179.97438 * 13 12 2 15 15 C 1.30280 * 109.37971 * 359.97438 * 14 13 12 16 16 C 1.50702 * 126.28215 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.47029 * 89.97773 * 16 15 14 18 18 C 1.50693 * 109.47216 * 179.97438 * 17 16 15 19 19 C 1.38240 * 120.00042 * 269.73295 * 18 17 16 20 20 C 1.38236 * 119.99757 * 179.76574 * 19 18 17 21 21 C 1.38232 * 120.00217 * 0.50583 * 20 19 18 22 22 C 1.38231 * 120.00149 * 359.74472 * 21 20 19 23 23 C 1.38237 * 119.99824 * 0.02562 * 22 21 20 24 24 O 1.34357 * 126.28163 * 119.71598 * 12 2 1 25 25 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 26 26 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.46908 * 209.97881 * 16 15 14 30 30 H 1.09003 * 109.46986 * 329.98242 * 16 15 14 31 31 H 1.09001 * 109.47405 * 300.00353 * 17 16 15 32 32 H 1.08996 * 109.46932 * 60.00003 * 17 16 15 33 33 H 1.07997 * 119.99843 * 359.97438 * 19 18 17 34 34 H 1.08000 * 119.99794 * 180.22344 * 20 19 18 35 35 H 1.07999 * 120.00056 * 179.72313 * 21 20 19 36 36 H 1.07998 * 120.00325 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.00306 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 6 2.0323 -0.7104 -1.2305 13 7 1.7938 -1.9488 -1.5570 14 7 2.3801 -2.2174 -2.6703 15 6 3.0122 -1.1593 -3.0923 16 6 3.8248 -1.0510 -4.3568 17 6 2.9218 -0.5990 -5.5062 18 6 3.7344 -0.4901 -6.7706 19 6 4.3484 0.7047 -7.0968 20 6 5.0979 0.8032 -8.2542 21 6 5.2248 -0.2900 -9.0906 22 6 4.6065 -1.4833 -8.7670 23 6 3.8609 -1.5832 -7.6073 24 8 2.8035 -0.1812 -2.1950 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9040 -0.5274 4.4375 29 1 4.6234 -0.3230 -4.2142 30 1 4.2572 -2.0228 -4.5951 31 1 2.1231 -1.3269 -5.6487 32 1 2.4893 0.3727 -5.2679 33 1 4.2454 1.5602 -6.4458 34 1 5.5806 1.7356 -8.5073 35 1 5.8066 -0.2118 -9.9971 36 1 4.7053 -2.3373 -9.4207 37 1 3.3775 -2.5153 -7.3546 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326988643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:46 Heat of formation + Delta-G solvation = 28.164009 kcal Electronic energy + Delta-G solvation = -19487.185841 eV Core-core repulsion = 16423.130401 eV Total energy + Delta-G solvation = -3064.055439 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.16740 -40.17686 -37.14323 -36.97394 -35.77571 -33.83109 -32.01403 -31.72633 -29.51829 -27.30085 -25.95828 -25.36465 -23.42022 -23.13135 -22.29219 -21.80581 -18.97095 -18.40508 -17.94148 -17.58193 -17.01840 -16.43080 -16.24980 -15.66923 -15.51634 -14.97958 -14.60615 -14.30864 -14.20509 -14.14996 -13.72491 -13.54109 -13.40375 -13.27849 -12.97717 -12.85199 -12.66254 -12.41602 -12.18388 -11.95470 -11.80542 -11.70250 -11.48855 -11.43358 -10.84662 -10.40131 -9.77606 -9.59854 -8.37199 -6.48581 0.21696 0.47711 0.54624 1.34367 1.34475 1.39365 1.44533 1.50420 2.28334 2.85322 2.95446 2.97954 3.56488 3.78445 3.94217 4.03072 4.07103 4.22323 4.24287 4.32320 4.33829 4.39874 4.48027 4.53783 4.65102 4.67957 4.76000 4.85613 4.87082 4.93780 4.99524 5.19143 5.22645 5.33464 5.40707 5.61877 5.67696 5.74033 6.10944 6.16104 6.54657 7.14812 7.39698 8.79515 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.042535 B = 0.003218 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.125280 B = 8698.468858 C = 8928.341695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.101 3.899 3 H 0.074 0.926 4 C -0.528 4.528 5 H 0.027 0.973 6 C 0.022 3.978 7 N -0.940 5.940 8 Si 0.953 3.047 9 H -0.257 1.257 10 H -0.292 1.292 11 H -0.232 1.232 12 C 0.207 3.793 13 N -0.324 5.324 14 N -0.319 5.319 15 C 0.151 3.849 16 C -0.006 4.006 17 C -0.069 4.069 18 C -0.091 4.091 19 C -0.125 4.125 20 C -0.127 4.127 21 C -0.129 4.129 22 C -0.127 4.127 23 C -0.125 4.125 24 O -0.233 6.233 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.273 0.727 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.707 6.448 -25.123 26.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.081 3.919 3 H 0.091 0.909 4 C -0.566 4.566 5 H 0.045 0.955 6 C -0.177 4.177 7 N -0.578 5.578 8 Si 0.777 3.223 9 H -0.182 1.182 10 H -0.219 1.219 11 H -0.155 1.155 12 C -0.004 4.004 13 N -0.169 5.169 14 N -0.165 5.165 15 C -0.061 4.061 16 C -0.044 4.044 17 C -0.107 4.107 18 C -0.091 4.091 19 C -0.143 4.143 20 C -0.145 4.145 21 C -0.147 4.147 22 C -0.145 4.145 23 C -0.143 4.143 24 O -0.113 6.113 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.139 0.861 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.252 5.194 -24.886 25.630 hybrid contribution 0.216 1.086 0.815 1.374 sum 3.467 6.280 -24.071 25.117 Atomic orbital electron populations 1.22075 0.93797 1.02452 1.01417 1.17963 0.94561 0.95903 0.83509 0.90860 1.20746 1.33206 1.12984 0.89712 0.95499 1.25862 0.96875 1.00510 0.94453 1.70015 1.46513 1.42349 0.98923 0.85798 0.79096 0.78936 0.78502 1.18216 1.21914 1.15545 1.28563 0.89995 0.90277 0.91602 1.74333 1.21698 1.13220 1.07674 1.74239 1.11015 1.25220 1.06029 1.28719 1.00070 0.82067 0.95260 1.20361 0.95430 1.06510 0.82115 1.20493 0.96829 1.03137 0.90280 1.19718 0.98990 0.94561 0.95827 1.21325 0.97569 0.97547 0.97850 1.21447 0.98805 0.99703 0.94558 1.21498 0.99745 0.93122 1.00350 1.21441 0.97290 0.98719 0.97076 1.21323 0.99471 0.98602 0.94947 1.84782 1.55294 1.42125 1.29103 0.92189 0.91028 0.92554 0.91774 0.86723 0.86109 0.90355 0.90116 0.84996 0.84275 0.84200 0.84351 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.68 8.66 71.98 0.62 -5.06 16 2 C 0.10 4.71 2.36 -12.29 -0.03 4.68 16 3 H 0.07 3.16 7.20 -2.39 -0.02 3.15 16 4 C -0.53 -30.38 9.13 25.60 0.23 -30.15 16 5 H 0.03 1.78 7.98 -2.91 -0.02 1.76 16 6 C 0.02 1.24 5.45 84.65 0.46 1.70 16 7 N -0.94 -57.83 13.96 21.45 0.30 -57.53 16 8 Si 0.95 41.40 24.37 68.60 1.67 43.07 16 9 H -0.26 -10.47 6.87 99.48 0.68 -9.79 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.23 -8.87 6.53 99.48 0.65 -8.22 16 12 C 0.21 9.46 6.92 88.34 0.61 10.07 16 13 N -0.32 -15.65 12.22 -165.51 -2.02 -17.67 16 14 N -0.32 -13.36 12.22 -165.50 -2.02 -15.39 16 15 C 0.15 5.17 7.73 88.34 0.68 5.85 16 16 C -0.01 -0.13 5.82 29.85 0.17 0.05 16 17 C -0.07 -1.30 5.33 29.85 0.16 -1.14 16 18 C -0.09 -1.55 5.13 -19.87 -0.10 -1.65 16 19 C -0.12 -1.95 9.70 22.27 0.22 -1.74 16 20 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 21 C -0.13 -1.69 10.05 22.27 0.22 -1.46 16 22 C -0.13 -1.78 10.05 22.27 0.22 -1.56 16 23 C -0.13 -2.02 9.70 22.27 0.22 -1.81 16 24 O -0.23 -9.15 10.87 -3.57 -0.04 -9.19 16 25 H 0.06 2.37 3.27 -2.39 -0.01 2.36 16 26 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.08 1.55 8.09 -2.39 -0.02 1.53 16 32 H 0.08 1.49 8.08 -2.39 -0.02 1.47 16 33 H 0.13 1.75 8.06 -2.91 -0.02 1.72 16 34 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 36 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -71.66 316.02 2.79 -68.87 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.99 Total: 11.56 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 3.92 Total: -23.73 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -3.75 Total: -90.58 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.04 Total: -9.19 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.67 Total: 43.07 kcal Total: -71.66 2.79 -68.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326988643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.032 kcal (2) G-P(sol) polarization free energy of solvation -71.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds