Wall clock time and date at job start Mon Mar 30 2020 01:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47154 * 268.70833 * 3 2 1 5 5 C 1.36942 * 119.99710 * 262.84879 * 4 3 2 6 6 H 1.08003 * 119.99894 * 213.57743 * 5 4 3 7 7 C 1.38811 * 119.99929 * 33.58388 * 5 4 3 8 8 N 1.31615 * 119.99961 * 5.55010 * 7 5 4 9 9 Si 1.86797 * 119.99710 * 185.55454 * 7 5 4 10 10 H 1.48504 * 109.47283 * 59.99929 * 9 7 5 11 11 H 1.48509 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47494 * 299.99677 * 9 7 5 13 13 C 1.46500 * 120.00301 * 82.85334 * 4 3 2 14 14 C 1.50693 * 109.47123 * 94.60125 * 13 4 3 15 15 C 1.38134 * 120.03732 * 262.68765 * 14 13 4 16 16 C 1.38260 * 120.07451 * 179.72642 * 15 14 13 17 17 C 1.38311 * 120.13849 * 0.25458 * 16 15 14 18 18 C 1.38093 * 120.06814 * 0.02562 * 17 16 15 19 19 C 1.38855 * 120.03567 * 82.94650 * 14 13 4 20 20 N 1.39922 * 120.06898 * 0.02562 * 19 14 13 21 21 C 1.34776 * 119.99698 * 204.58942 * 20 19 14 22 22 C 1.50707 * 119.99605 * 185.41359 * 21 20 19 23 23 O 1.21288 * 120.00335 * 5.41305 * 21 20 19 24 24 H 4.40641 * 5.51502 * 179.97438 * 4 1 2 25 25 H 1.08995 * 109.46935 * 148.70472 * 3 2 1 26 26 H 1.09004 * 109.47413 * 28.70985 * 3 2 1 27 27 H 0.97002 * 120.00182 * 180.02562 * 8 7 5 28 28 H 1.09005 * 109.46639 * 334.60317 * 13 4 3 29 29 H 1.08996 * 109.47073 * 214.60674 * 13 4 3 30 30 H 1.07997 * 119.96325 * 0.02562 * 15 14 13 31 31 H 1.07992 * 119.93534 * 180.23330 * 16 15 14 32 32 H 1.07998 * 119.96497 * 179.97438 * 17 16 15 33 33 H 1.08000 * 120.03229 * 179.97438 * 18 17 16 34 34 H 0.96996 * 120.00067 * 24.59744 * 20 19 14 35 35 H 1.08992 * 109.47187 * 0.02562 * 22 21 20 36 36 H 1.09002 * 109.46752 * 120.00117 * 22 21 20 37 37 H 1.08998 * 109.46910 * 239.99760 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0320 1.3809 5 6 3.5012 1.2221 1.9505 6 1 4.3093 1.2516 2.6665 7 6 2.8345 2.3903 1.6077 8 7 1.7810 2.3400 0.8204 9 14 3.4326 4.0339 2.2637 10 1 4.8268 4.2701 1.8101 11 1 2.5562 5.1189 1.7539 12 1 3.3907 4.0193 3.7480 13 6 3.2303 -1.2097 2.1523 14 6 4.6276 -1.7630 2.0419 15 6 4.9081 -2.7542 1.1217 16 6 6.1911 -3.2584 1.0159 17 6 7.1965 -2.7761 1.8341 18 6 6.9213 -1.7892 2.7600 19 6 5.6334 -1.2806 2.8688 20 7 5.3513 -0.2808 3.8061 21 6 6.3360 0.5273 4.2463 22 6 6.0598 1.5225 5.3439 23 8 7.4443 0.4537 3.7593 24 1 -1.0500 0.0002 0.0001 25 1 3.0089 0.8789 -0.5338 26 1 3.0098 -0.9005 -0.4937 27 1 1.3153 3.1564 0.5805 28 1 2.5194 -1.9370 1.7599 29 1 3.0016 -1.0061 3.1984 30 1 4.1254 -3.1325 0.4809 31 1 6.4087 -4.0307 0.2931 32 1 8.1977 -3.1722 1.7493 33 1 7.7067 -1.4133 3.3990 34 1 4.4471 -0.1693 4.1390 35 1 5.0177 1.4424 5.6532 36 1 6.7081 1.3140 6.1949 37 1 6.2540 2.5306 4.9775 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334332617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:55 Heat of formation + Delta-G solvation = 78.164210 kcal Electronic energy + Delta-G solvation = -21064.598883 eV Core-core repulsion = 18002.711615 eV Total energy + Delta-G solvation = -3061.887268 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.24443 -38.12361 -35.93581 -34.34240 -32.08323 -31.53943 -30.56168 -29.91864 -28.17982 -26.27973 -25.48986 -22.64699 -22.19585 -20.40669 -19.95796 -17.59497 -17.13203 -16.56642 -16.40179 -15.53437 -15.18513 -14.79298 -14.30578 -13.93689 -13.76269 -13.38837 -13.28006 -13.04437 -12.58360 -12.39365 -12.30955 -11.88761 -11.56007 -11.46322 -11.19568 -10.97610 -10.80217 -10.73682 -10.40596 -10.20159 -9.83058 -9.35574 -8.98891 -8.79045 -8.42573 -8.26004 -7.51556 -6.81017 -5.81640 -3.43792 1.74758 1.91129 2.96025 3.27165 3.35688 3.37126 3.52258 4.14477 4.38267 4.40043 4.50908 4.99202 5.29096 5.35173 5.36951 5.45194 5.54716 5.56933 5.71504 5.80046 5.86052 5.92253 5.99468 6.09663 6.25327 6.48798 6.56308 6.71190 6.81086 6.90057 6.98895 7.07814 7.18306 7.44021 7.54416 7.71706 7.83914 8.33478 8.46074 9.06595 9.23329 9.68635 10.22749 11.18769 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.009115 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.572452 B = 3071.155250 C = 4654.577568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.089 4.089 3 C 0.272 3.728 4 N -0.575 5.575 5 C -0.276 4.276 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.883 5.883 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.183 3.817 14 C -0.111 4.111 15 C -0.098 4.098 16 C -0.145 4.145 17 C -0.116 4.116 18 C -0.138 4.138 19 C 0.164 3.836 20 N -0.653 5.653 21 C 0.513 3.487 22 C -0.171 4.171 23 O -0.538 6.538 24 H 0.188 0.812 25 H 0.086 0.914 26 H 0.034 0.966 27 H 0.256 0.744 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.138 0.862 34 H 0.416 0.584 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.655 -7.552 5.223 10.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.092 4.092 3 C 0.147 3.853 4 N -0.294 5.294 5 C -0.405 4.405 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.525 5.525 9 Si 0.724 3.276 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.207 1.207 13 C 0.056 3.944 14 C -0.116 4.116 15 C -0.117 4.117 16 C -0.164 4.164 17 C -0.135 4.135 18 C -0.158 4.158 19 C 0.068 3.932 20 N -0.298 5.298 21 C 0.302 3.698 22 C -0.231 4.231 23 O -0.415 6.415 24 H 0.205 0.795 25 H 0.104 0.896 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.156 0.844 34 H 0.255 0.745 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.321 -7.354 4.901 10.316 hybrid contribution -0.564 1.300 0.350 1.460 sum 4.757 -6.054 5.251 9.320 Atomic orbital electron populations 1.24100 0.95257 1.08551 1.04434 1.24128 0.95155 0.93543 0.96332 1.17617 0.82862 0.98531 0.86338 1.43767 1.74736 1.02039 1.08896 1.19221 1.12266 0.84412 1.24650 0.90969 1.25325 0.95432 0.98614 0.99145 1.69931 1.18646 1.26739 1.37154 0.86505 0.78243 0.83992 0.78840 1.20798 1.21532 1.20662 1.19697 0.89360 0.89202 0.96095 1.20834 0.98793 0.96990 0.94976 1.20797 0.96495 0.96650 0.97751 1.20990 0.93426 1.01412 1.00572 1.20871 0.98645 0.97329 0.96656 1.21310 0.96179 0.97337 1.00968 1.17601 0.94059 0.89943 0.91573 1.43774 1.13082 1.31548 1.41400 1.20815 0.84324 0.81053 0.83590 1.21853 1.04077 0.99572 0.97570 1.90642 1.23570 1.69248 1.58048 0.79476 0.89641 0.94827 0.93320 0.92858 0.93308 0.86388 0.86911 0.86748 0.84399 0.74519 0.90161 0.88824 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.83 19.20 29.55 0.57 -6.26 16 2 C -0.09 -2.11 11.14 -37.12 -0.41 -2.52 16 3 C 0.27 6.31 5.39 -6.83 -0.04 6.27 16 4 N -0.58 -13.29 2.45 -177.95 -0.44 -13.73 16 5 C -0.28 -6.89 9.23 -15.06 -0.14 -7.03 16 6 H 0.07 1.72 4.95 -52.48 -0.26 1.46 16 7 C 0.02 0.41 5.15 -17.43 -0.09 0.32 16 8 N -0.88 -24.26 9.33 55.49 0.52 -23.74 16 9 Si 0.90 20.76 29.56 -169.99 -5.02 15.74 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 C 0.18 3.54 5.43 -5.20 -0.03 3.51 16 14 C -0.11 -2.00 5.45 -104.44 -0.57 -2.57 16 15 C -0.10 -1.59 9.67 -39.61 -0.38 -1.97 16 16 C -0.15 -2.17 10.04 -39.55 -0.40 -2.57 16 17 C -0.12 -1.80 10.04 -39.61 -0.40 -2.20 16 18 C -0.14 -2.42 8.72 -39.39 -0.34 -2.77 16 19 C 0.16 2.98 6.42 -83.69 -0.54 2.44 16 20 N -0.65 -11.10 3.24 -9.86 -0.03 -11.14 16 21 C 0.51 8.70 7.42 -10.98 -0.08 8.62 16 22 C -0.17 -2.16 10.39 36.01 0.37 -1.78 16 23 O -0.54 -10.77 14.23 5.55 0.08 -10.69 16 24 H 0.19 3.56 7.80 -54.09 -0.42 3.13 16 25 H 0.09 2.19 7.07 -51.93 -0.37 1.83 16 26 H 0.03 0.70 8.12 -51.93 -0.42 0.28 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.05 0.98 7.93 -51.93 -0.41 0.57 16 29 H 0.05 0.90 6.66 -51.93 -0.35 0.56 16 30 H 0.12 1.73 8.05 -52.49 -0.42 1.31 16 31 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.14 2.50 5.75 -52.49 -0.30 2.20 16 34 H 0.42 6.58 6.28 -40.82 -0.26 6.33 16 35 H 0.08 0.88 7.92 -51.93 -0.41 0.47 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 315.07 15.07 4.75 4.75 Total: -1.00 -30.64 315.07 -7.07 -37.71 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -4.45 Total: 9.61 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -2.48 Total: -8.50 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.05 Total: -48.61 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.69 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.64 -7.07 -37.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334332617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.873 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds