Wall clock time and date at job start Mon Mar 30 2020 01:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47154 * 268.70833 * 3 2 1 5 5 C 1.36942 * 119.99710 * 262.84879 * 4 3 2 6 6 H 1.08003 * 119.99894 * 213.57743 * 5 4 3 7 7 C 1.38811 * 119.99929 * 33.58388 * 5 4 3 8 8 N 1.31615 * 119.99961 * 5.55010 * 7 5 4 9 9 Si 1.86797 * 119.99710 * 185.55454 * 7 5 4 10 10 H 1.48504 * 109.47283 * 59.99929 * 9 7 5 11 11 H 1.48509 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47494 * 299.99677 * 9 7 5 13 13 C 1.46500 * 120.00301 * 82.85334 * 4 3 2 14 14 C 1.50693 * 109.47123 * 94.60125 * 13 4 3 15 15 C 1.38134 * 120.03732 * 262.68765 * 14 13 4 16 16 C 1.38260 * 120.07451 * 179.72642 * 15 14 13 17 17 C 1.38311 * 120.13849 * 0.25458 * 16 15 14 18 18 C 1.38093 * 120.06814 * 0.02562 * 17 16 15 19 19 C 1.38855 * 120.03567 * 82.94650 * 14 13 4 20 20 N 1.39922 * 120.06898 * 0.02562 * 19 14 13 21 21 C 1.34776 * 119.99698 * 204.58942 * 20 19 14 22 22 C 1.50707 * 119.99605 * 185.41359 * 21 20 19 23 23 O 1.21288 * 120.00335 * 5.41305 * 21 20 19 24 24 H 4.40641 * 5.51502 * 179.97438 * 4 1 2 25 25 H 1.08995 * 109.46935 * 148.70472 * 3 2 1 26 26 H 1.09004 * 109.47413 * 28.70985 * 3 2 1 27 27 H 0.97002 * 120.00182 * 180.02562 * 8 7 5 28 28 H 1.09005 * 109.46639 * 334.60317 * 13 4 3 29 29 H 1.08996 * 109.47073 * 214.60674 * 13 4 3 30 30 H 1.07997 * 119.96325 * 0.02562 * 15 14 13 31 31 H 1.07992 * 119.93534 * 180.23330 * 16 15 14 32 32 H 1.07998 * 119.96497 * 179.97438 * 17 16 15 33 33 H 1.08000 * 120.03229 * 179.97438 * 18 17 16 34 34 H 0.96996 * 120.00067 * 24.59744 * 20 19 14 35 35 H 1.08992 * 109.47187 * 0.02562 * 22 21 20 36 36 H 1.09002 * 109.46752 * 120.00117 * 22 21 20 37 37 H 1.08998 * 109.46910 * 239.99760 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0320 1.3809 5 6 3.5012 1.2221 1.9505 6 1 4.3093 1.2516 2.6665 7 6 2.8345 2.3903 1.6077 8 7 1.7810 2.3400 0.8204 9 14 3.4326 4.0339 2.2637 10 1 4.8268 4.2701 1.8101 11 1 2.5562 5.1189 1.7539 12 1 3.3907 4.0193 3.7480 13 6 3.2303 -1.2097 2.1523 14 6 4.6276 -1.7630 2.0419 15 6 4.9081 -2.7542 1.1217 16 6 6.1911 -3.2584 1.0159 17 6 7.1965 -2.7761 1.8341 18 6 6.9213 -1.7892 2.7600 19 6 5.6334 -1.2806 2.8688 20 7 5.3513 -0.2808 3.8061 21 6 6.3360 0.5273 4.2463 22 6 6.0598 1.5225 5.3439 23 8 7.4443 0.4537 3.7593 24 1 -1.0500 0.0002 0.0001 25 1 3.0089 0.8789 -0.5338 26 1 3.0098 -0.9005 -0.4937 27 1 1.3153 3.1564 0.5805 28 1 2.5194 -1.9370 1.7599 29 1 3.0016 -1.0061 3.1984 30 1 4.1254 -3.1325 0.4809 31 1 6.4087 -4.0307 0.2931 32 1 8.1977 -3.1722 1.7493 33 1 7.7067 -1.4133 3.3990 34 1 4.4471 -0.1693 4.1390 35 1 5.0177 1.4424 5.6532 36 1 6.7081 1.3140 6.1949 37 1 6.2540 2.5306 4.9775 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334332617.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:54 Heat of formation + Delta-G solvation = 61.821750 kcal Electronic energy + Delta-G solvation = -21065.307545 eV Core-core repulsion = 18002.711615 eV Total energy + Delta-G solvation = -3062.595930 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.57136 -39.46762 -37.63456 -35.70357 -33.74202 -33.34890 -31.74147 -31.50646 -29.39396 -28.00498 -27.17562 -23.99717 -23.79785 -21.84301 -21.28307 -19.26140 -18.56922 -18.17170 -17.84099 -17.14236 -16.59646 -16.25371 -15.71070 -15.54040 -15.27675 -15.02635 -14.78789 -14.42107 -13.91666 -13.70306 -13.40485 -13.33519 -13.15910 -12.98300 -12.77648 -12.71416 -12.45199 -12.13756 -12.11793 -11.95762 -11.26469 -10.81673 -10.69758 -10.62816 -10.25987 -9.59505 -8.89256 -8.60300 -7.76699 -5.38779 0.45826 0.60395 1.42858 1.48619 1.51220 1.67686 2.28484 2.38791 2.54616 2.65170 3.05866 3.36254 3.81221 3.97678 4.09740 4.12085 4.18988 4.35868 4.40771 4.49134 4.60158 4.69810 4.72014 4.88535 4.96317 5.02107 5.09866 5.24884 5.28057 5.51049 5.61241 5.70546 5.72664 5.73869 5.78656 6.26828 6.42029 6.54880 7.15084 7.16986 7.44371 7.82922 8.34052 9.21043 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.009115 C = 0.006014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.572452 B = 3071.155250 C = 4654.577568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.122 4.122 3 C 0.276 3.724 4 N -0.588 5.588 5 C -0.268 4.268 6 H 0.081 0.919 7 C -0.036 4.036 8 N -0.909 5.909 9 Si 0.944 3.056 10 H -0.291 1.291 11 H -0.302 1.302 12 H -0.259 1.259 13 C 0.188 3.812 14 C -0.127 4.127 15 C -0.101 4.101 16 C -0.140 4.140 17 C -0.114 4.114 18 C -0.155 4.155 19 C 0.144 3.856 20 N -0.653 5.653 21 C 0.504 3.496 22 C -0.166 4.166 23 O -0.575 6.575 24 H 0.218 0.782 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.244 0.756 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.134 0.866 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.128 0.872 34 H 0.419 0.581 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.949 -8.676 5.846 11.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 C -0.125 4.125 3 C 0.150 3.850 4 N -0.308 5.308 5 C -0.399 4.399 6 H 0.099 0.901 7 C -0.233 4.233 8 N -0.552 5.552 9 Si 0.773 3.227 10 H -0.218 1.218 11 H -0.228 1.228 12 H -0.184 1.184 13 C 0.062 3.938 14 C -0.132 4.132 15 C -0.120 4.120 16 C -0.158 4.158 17 C -0.133 4.133 18 C -0.175 4.175 19 C 0.049 3.951 20 N -0.297 5.297 21 C 0.295 3.705 22 C -0.225 4.225 23 O -0.455 6.455 24 H 0.234 0.766 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.152 0.848 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.146 0.854 34 H 0.259 0.741 35 H 0.116 0.884 36 H 0.139 0.861 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.614 -8.508 5.558 11.610 hybrid contribution -0.604 1.526 0.129 1.646 sum 5.010 -6.983 5.687 10.305 Atomic orbital electron populations 1.24871 0.96228 1.07247 1.03251 1.24442 0.95861 0.94720 0.97495 1.17489 0.82987 0.97976 0.86522 1.43939 1.74794 1.02809 1.09221 1.19561 1.11615 0.85166 1.23520 0.90112 1.25916 0.96033 1.01196 1.00165 1.70109 1.19959 1.26292 1.38868 0.85710 0.76693 0.80771 0.79522 1.21802 1.22843 1.18394 1.19721 0.90495 0.87767 0.95775 1.20703 0.97835 0.98333 0.96309 1.21082 0.97718 0.96038 0.97186 1.21343 0.92491 1.01479 1.00519 1.21237 1.00194 0.96252 0.95569 1.21389 0.95776 0.98424 1.01942 1.17845 0.94503 0.90535 0.92224 1.43845 1.13329 1.31400 1.41163 1.21634 0.83685 0.81241 0.83983 1.21918 1.05902 0.97891 0.96778 1.90618 1.24947 1.70403 1.59533 0.76557 0.92939 0.92588 0.94577 0.92049 0.92947 0.84818 0.83553 0.84117 0.85426 0.74127 0.88400 0.86135 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.01 19.20 74.32 1.43 -11.59 16 2 C -0.12 -5.78 11.14 31.13 0.35 -5.43 16 3 C 0.28 12.83 5.39 84.57 0.46 13.28 16 4 N -0.59 -26.95 2.45 -716.92 -1.76 -28.70 16 5 C -0.27 -13.33 9.23 84.03 0.78 -12.56 16 6 H 0.08 3.81 4.95 -2.91 -0.01 3.79 16 7 C -0.04 -1.88 5.15 84.86 0.44 -1.44 16 8 N -0.91 -50.57 9.33 21.65 0.20 -50.37 16 9 Si 0.94 42.76 29.56 68.60 2.03 44.79 16 10 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 11 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 13 C 0.19 7.07 5.43 85.63 0.46 7.54 16 14 C -0.13 -4.43 5.45 -19.74 -0.11 -4.54 16 15 C -0.10 -3.06 9.67 22.25 0.22 -2.84 16 16 C -0.14 -3.75 10.04 22.29 0.22 -3.53 16 17 C -0.11 -3.27 10.04 22.25 0.22 -3.05 16 18 C -0.16 -5.33 8.72 22.39 0.20 -5.14 16 19 C 0.14 5.16 6.42 38.15 0.24 5.41 16 20 N -0.65 -21.79 3.24 -303.50 -0.98 -22.78 16 21 C 0.50 16.74 7.42 87.66 0.65 17.39 16 22 C -0.17 -3.86 10.39 71.24 0.74 -3.12 16 23 O -0.57 -23.04 14.23 -3.05 -0.04 -23.09 16 24 H 0.22 7.76 7.80 -4.42 -0.03 7.72 16 25 H 0.05 2.77 7.07 -2.39 -0.02 2.75 16 26 H 0.06 2.29 8.12 -2.39 -0.02 2.27 16 27 H 0.24 13.69 8.31 -92.71 -0.77 12.92 16 28 H 0.06 2.18 7.93 -2.38 -0.02 2.16 16 29 H 0.05 1.90 6.66 -2.39 -0.02 1.88 16 30 H 0.13 3.56 8.05 -2.91 -0.02 3.54 16 31 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 32 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 33 H 0.13 4.63 5.75 -2.91 -0.02 4.62 16 34 H 0.42 12.95 6.28 -92.71 -0.58 12.37 16 35 H 0.10 1.91 7.92 -2.39 -0.02 1.89 16 36 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -65.85 315.07 6.24 -59.61 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: 0.50 Total: 30.17 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 6.29 Total: -9.62 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -2.54 Total: -101.85 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.04 Total: -23.09 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -65.85 6.24 -59.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334332617.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.428 kcal (2) G-P(sol) polarization free energy of solvation -65.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds