Wall clock time and date at job start Mon Mar 30 2020 01:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47053 * 2 1 4 4 H 1.09005 * 109.47190 * 305.00013 * 3 2 1 5 5 F 1.39896 * 109.47255 * 65.00105 * 3 2 1 6 6 C 1.50697 * 109.46765 * 185.00510 * 3 2 1 7 7 O 1.21281 * 120.00458 * 316.44860 * 6 3 2 8 8 N 1.34780 * 119.99841 * 136.45610 * 6 3 2 9 9 C 1.46968 * 120.59266 * 185.81657 * 8 6 3 10 10 C 1.53365 * 108.63662 * 235.20245 * 9 8 6 11 11 N 1.46963 * 108.63312 * 310.57624 * 10 9 8 12 12 C 1.34780 * 120.59502 * 235.20075 * 11 10 9 13 13 O 1.21693 * 119.99841 * 5.33216 * 12 11 10 14 14 C 1.46374 * 120.00269 * 185.33417 * 12 11 10 15 15 H 1.07997 * 119.99851 * 354.88124 * 14 12 11 16 16 C 1.40048 * 120.00250 * 174.88434 * 14 12 11 17 17 N 1.30673 * 119.99830 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00273 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47172 * 270.00352 * 18 16 14 20 20 H 1.48501 * 109.46975 * 29.99582 * 18 16 14 21 21 H 1.48498 * 109.47406 * 150.00011 * 18 16 14 22 22 C 1.46965 * 118.81503 * 55.47891 * 11 10 9 23 23 C 1.46963 * 120.59502 * 5.79161 * 8 6 3 24 24 H 1.09006 * 109.46865 * 299.99798 * 1 2 3 25 25 H 1.08994 * 109.47616 * 59.99816 * 1 2 3 26 26 H 1.09001 * 109.47561 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46865 * 240.00202 * 2 1 3 28 28 H 1.09000 * 109.47233 * 120.00311 * 2 1 3 29 29 H 1.09000 * 109.61137 * 115.45396 * 9 8 6 30 30 H 1.08999 * 109.74872 * 355.03307 * 9 8 6 31 31 H 1.09000 * 109.61087 * 190.82951 * 10 9 8 32 32 H 1.08998 * 109.61047 * 70.31959 * 10 9 8 33 33 H 0.96995 * 120.00222 * 180.02562 * 17 16 14 34 34 H 1.09003 * 109.61148 * 64.26160 * 22 11 10 35 35 H 1.08995 * 109.61203 * 184.77820 * 22 11 10 36 36 H 1.08998 * 109.60956 * 244.54316 * 23 8 6 37 37 H 1.08993 * 109.60868 * 5.05366 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 9 1.6699 2.0680 1.1954 6 6 3.5419 1.4442 -0.1240 7 8 4.2049 0.6630 0.5249 8 7 4.1484 2.3141 -0.9559 9 6 5.5986 2.2440 -1.1837 10 6 6.2114 3.6134 -0.8657 11 7 5.4344 4.6486 -1.5616 12 6 6.0409 5.5185 -2.3935 13 8 7.2237 5.3915 -2.6496 14 6 5.2768 6.6160 -2.9888 15 1 4.2109 6.6812 -2.8281 16 6 5.9281 7.5814 -3.7667 17 7 7.2178 7.5022 -3.9615 18 14 4.9530 8.9816 -4.5270 19 1 4.4750 8.5778 -5.8737 20 1 3.7877 9.2994 -3.6631 21 1 5.8208 10.1804 -4.6485 22 6 3.9851 4.7224 -1.3294 23 6 3.3713 3.3494 -1.6517 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 5.7933 1.9890 -2.2254 30 1 6.0373 1.4869 -0.5338 31 1 7.2457 3.6399 -1.2086 32 1 6.1753 3.7896 0.2093 33 1 7.6690 8.1710 -4.4999 34 1 3.7940 4.9757 -0.2865 35 1 3.5487 5.4814 -1.9787 36 1 3.4074 3.1732 -2.7268 37 1 2.3371 3.3229 -1.3088 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337136382.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:33 Heat of formation + Delta-G solvation = -135.782250 kcal Electronic energy + Delta-G solvation = -21595.525141 eV Core-core repulsion = 18093.591233 eV Total energy + Delta-G solvation = -3501.933907 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.95870 -41.30760 -39.70215 -37.62857 -35.09977 -34.78606 -34.47883 -32.62639 -29.47198 -28.78603 -27.40303 -24.83412 -23.92657 -22.80725 -21.45049 -20.16957 -19.16055 -18.22488 -17.73395 -17.60067 -17.07834 -16.58268 -16.18981 -16.00970 -15.83608 -15.68516 -15.50052 -14.79259 -14.53396 -14.28065 -13.91552 -13.66432 -13.50922 -13.26992 -13.12982 -12.90058 -12.85431 -12.72458 -12.45998 -12.35688 -12.00961 -11.99559 -11.97373 -11.70222 -10.92497 -10.83248 -10.18637 -9.80557 -9.06154 -8.28719 -6.83921 1.21289 1.43794 1.44654 1.59842 1.65641 2.25205 2.46420 2.75377 3.07199 3.45877 3.53667 3.60473 3.82581 3.89318 3.93803 4.14131 4.25844 4.40455 4.43232 4.45872 4.54076 4.61256 4.71675 4.76960 4.81752 5.02558 5.05862 5.15864 5.25396 5.37463 5.40649 5.69372 6.10631 6.14490 6.33007 6.81758 6.88718 7.37998 8.44787 8.67126 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029270 B = 0.004560 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.373595 B = 6139.544995 C = 6816.632173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.081 3.919 4 H 0.141 0.859 5 F -0.200 7.200 6 C 0.489 3.511 7 O -0.567 6.567 8 N -0.598 5.598 9 C 0.110 3.890 10 C 0.109 3.891 11 N -0.645 5.645 12 C 0.541 3.459 13 O -0.631 6.631 14 C -0.565 4.565 15 H 0.102 0.898 16 C 0.029 3.971 17 N -0.824 5.824 18 Si 0.996 3.004 19 H -0.261 1.261 20 H -0.243 1.243 21 H -0.280 1.280 22 C 0.102 3.898 23 C 0.089 3.911 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.273 0.727 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.873 -9.439 3.458 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C 0.042 3.958 4 H 0.158 0.842 5 F -0.181 7.181 6 C 0.276 3.724 7 O -0.445 6.445 8 N -0.330 5.330 9 C -0.014 4.014 10 C -0.016 4.016 11 N -0.382 5.382 12 C 0.347 3.653 13 O -0.518 6.518 14 C -0.601 4.601 15 H 0.120 0.880 16 C -0.186 4.186 17 N -0.454 5.454 18 Si 0.815 3.185 19 H -0.185 1.185 20 H -0.166 1.166 21 H -0.205 1.205 22 C -0.022 4.022 23 C -0.033 4.033 24 H 0.075 0.925 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.105 0.895 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.732 -9.838 3.625 18.905 hybrid contribution 0.587 0.677 -0.091 0.901 sum -15.144 -9.160 3.534 18.048 Atomic orbital electron populations 1.21769 0.92199 1.03524 1.03125 1.22000 0.98757 0.92332 1.04545 1.21983 0.89577 0.97875 0.86353 0.84197 1.92865 1.91854 1.84184 1.49189 1.21640 0.91812 0.80151 0.78806 1.90679 1.67344 1.41400 1.45120 1.48255 1.08602 1.31704 1.44449 1.21864 0.80266 0.97366 1.01909 1.21500 0.96749 0.87587 0.95752 1.48056 1.08199 1.33776 1.48217 1.18753 0.86543 0.81978 0.77978 1.90556 1.19136 1.76339 1.65805 1.21507 0.96477 1.08979 1.33116 0.87996 1.27011 0.95612 1.01273 0.94754 1.70194 1.11556 1.32990 1.30641 0.85037 0.78584 0.75734 0.79109 1.18545 1.16615 1.20512 1.22146 0.80712 0.97666 1.01637 1.22650 0.96353 0.86017 0.98295 0.92451 0.90545 0.90699 0.88968 0.91401 0.91004 0.88566 0.91233 0.93004 0.91681 0.92248 0.87190 0.89458 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.83 71.98 0.71 -1.01 16 2 C -0.14 -2.30 5.39 30.59 0.16 -2.13 16 3 C 0.08 1.58 3.18 29.85 0.10 1.68 16 4 H 0.14 1.72 5.71 -2.38 -0.01 1.71 16 5 F -0.20 -4.75 16.75 44.97 0.75 -4.00 16 6 C 0.49 13.56 7.04 87.66 0.62 14.18 16 7 O -0.57 -19.89 15.99 -3.03 -0.05 -19.94 16 8 N -0.60 -16.78 2.95 -817.17 -2.41 -19.19 16 9 C 0.11 3.59 6.59 86.41 0.57 4.16 16 10 C 0.11 4.32 6.60 86.41 0.57 4.89 16 11 N -0.65 -28.03 2.94 -822.24 -2.42 -30.44 16 12 C 0.54 30.12 7.62 86.36 0.66 30.78 16 13 O -0.63 -41.42 14.45 -4.33 -0.06 -41.49 16 14 C -0.56 -29.80 8.86 24.83 0.22 -29.58 16 15 H 0.10 4.60 5.66 -2.91 -0.02 4.58 16 16 C 0.03 1.52 5.50 85.30 0.47 1.99 16 17 N -0.82 -49.18 11.84 21.84 0.26 -48.92 16 18 Si 1.00 38.52 29.56 68.60 2.03 40.55 16 19 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 20 H -0.24 -8.51 7.11 99.48 0.71 -7.80 16 21 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 22 C 0.10 3.25 6.51 86.57 0.56 3.81 16 23 C 0.09 2.10 6.38 86.57 0.55 2.65 16 24 H 0.06 0.74 7.94 -2.38 -0.02 0.72 16 25 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.07 1.39 8.04 -2.39 -0.02 1.37 16 29 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.10 3.11 7.00 -2.39 -0.02 3.09 16 31 H 0.07 3.15 6.99 -2.39 -0.02 3.13 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.27 14.84 8.29 -92.71 -0.77 14.07 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 35 H 0.11 3.46 5.34 -2.39 -0.01 3.45 16 36 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 37 H 0.13 1.92 5.40 -2.39 -0.01 1.91 16 Total: -1.00 -78.33 306.67 4.38 -73.96 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 1.09 Total: 18.05 kcal Atomic # 6 Polarization: 26.23 SS G_CDS: 5.19 Total: 31.42 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -4.57 Total: -98.55 kcal Atomic # 8 Polarization: -61.32 SS G_CDS: -0.11 Total: -61.43 kcal Atomic # 9 Polarization: -4.75 SS G_CDS: 0.75 Total: -4.00 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -78.33 4.38 -73.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337136382.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.826 kcal (2) G-P(sol) polarization free energy of solvation -78.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds