Wall clock time and date at job start Mon Mar 30 2020 01:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46898 * 109.46941 * 109.53327 * 3 2 1 5 5 C 1.46900 * 110.99768 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.46922 * 180.02562 * 5 4 3 7 7 O 1.21284 * 120.00445 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00120 * 179.97438 * 6 5 4 9 9 C 1.39929 * 120.00330 * 185.27166 * 8 6 5 10 10 C 1.38871 * 120.06427 * 33.29173 * 9 8 6 11 11 C 1.38112 * 119.92493 * 180.02562 * 10 9 8 12 12 C 1.38282 * 120.07478 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.93398 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47137 * 89.99687 * 13 12 11 15 15 H 1.08000 * 120.00327 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99965 * 180.27849 * 14 13 12 17 17 N 1.31521 * 120.00072 * 359.71988 * 16 14 13 18 18 Si 1.86807 * 120.00293 * 179.72747 * 16 14 13 19 19 H 1.48500 * 109.47360 * 89.99584 * 18 16 14 20 20 H 1.48500 * 109.47083 * 210.00034 * 18 16 14 21 21 H 1.48502 * 109.46588 * 329.99331 * 18 16 14 22 22 C 1.38286 * 120.13848 * 0.24863 * 12 11 10 23 23 C 1.38122 * 120.06639 * 359.49448 * 22 12 11 24 24 H 4.40885 * 5.52116 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.46738 * 349.53672 * 3 2 1 26 26 H 1.08992 * 109.46999 * 229.53528 * 3 2 1 27 27 H 1.00900 * 110.99925 * 303.95557 * 4 3 2 28 28 H 1.09003 * 109.47178 * 60.00246 * 5 4 3 29 29 H 1.08999 * 109.47296 * 299.99570 * 5 4 3 30 30 H 0.97001 * 119.99823 * 5.28307 * 8 6 5 31 31 H 1.08002 * 120.04284 * 0.02562 * 10 9 8 32 32 H 1.08005 * 119.96508 * 179.97438 * 11 10 9 33 33 H 1.08998 * 109.46787 * 329.99573 * 13 12 11 34 34 H 1.08997 * 109.47216 * 210.00042 * 13 12 11 35 35 H 0.97000 * 119.99850 * 179.97438 * 17 16 14 36 36 H 1.07996 * 119.96599 * 179.74614 * 22 12 11 37 37 H 1.08006 * 120.03084 * 180.25302 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1354 0.4640 -1.3053 5 6 4.6039 0.4771 -1.3424 6 6 5.0679 0.9573 -2.6934 7 8 4.2554 1.2593 -3.5416 8 7 6.3859 1.0522 -2.9587 9 6 6.8178 1.6013 -4.1712 10 6 6.0896 2.6194 -4.7724 11 6 6.5182 3.1590 -5.9693 12 6 7.6708 2.6861 -6.5693 13 6 8.1353 3.2767 -7.8756 14 6 9.0549 4.4389 -7.6027 15 1 9.2808 4.7214 -6.5850 16 6 9.6038 5.1449 -8.6521 17 7 9.3291 4.8006 -9.8913 18 14 10.7377 6.5904 -8.3138 19 1 12.1402 6.1101 -8.2285 20 1 10.6195 7.5804 -9.4143 21 1 10.3545 7.2300 -7.0295 22 6 8.3951 1.6684 -5.9760 23 6 7.9747 1.1283 -4.7763 24 1 -1.0501 0.0001 0.0002 25 1 3.0098 -1.0098 0.1866 26 1 3.0090 0.6677 0.7818 27 1 2.7601 -0.1000 -2.0531 28 1 4.9809 -0.5302 -1.1653 29 1 4.9809 1.1473 -0.5699 30 1 7.0351 0.7396 -2.3093 31 1 5.1890 2.9890 -4.3046 32 1 5.9521 3.9506 -6.4377 33 1 7.2726 3.6219 -8.4454 34 1 8.6688 2.5179 -8.4481 35 1 9.7150 5.2976 -10.6296 36 1 9.2927 1.2984 -6.4491 37 1 8.5430 0.3362 -4.3114 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341005212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:22 Heat of formation + Delta-G solvation = 45.264987 kcal Electronic energy + Delta-G solvation = -18940.046343 eV Core-core repulsion = 15876.732458 eV Total energy + Delta-G solvation = -3063.313885 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.35539 -38.30566 -36.61436 -34.86244 -33.15969 -32.93014 -30.64629 -30.29351 -28.63539 -26.55234 -24.69705 -23.04227 -22.37747 -20.83064 -20.02606 -18.85216 -17.55130 -16.96111 -16.45824 -16.28594 -15.49456 -15.00893 -14.91500 -14.56250 -14.22899 -13.98885 -13.73850 -13.14877 -12.97910 -12.78281 -12.69425 -12.45590 -11.98082 -11.37974 -11.27022 -10.87377 -10.81268 -10.63526 -10.60038 -10.35502 -10.05206 -9.85164 -9.42701 -9.26146 -8.91582 -8.40947 -8.28359 -7.37910 -6.02188 -4.06264 1.83819 2.06504 2.29848 2.50958 2.69070 3.03266 3.31302 3.37609 3.41919 3.90157 4.13714 4.38145 4.49427 4.59474 4.79313 4.89354 4.97804 5.06444 5.31652 5.42727 5.57483 5.59383 5.94126 6.04743 6.11483 6.20634 6.33428 6.65163 6.77501 6.85469 6.90961 7.17273 7.21913 7.28150 7.49108 7.53327 7.71617 7.88072 7.93554 8.16214 8.34082 8.99059 9.57371 11.07381 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.041298 B = 0.002739 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.844381 B =10221.035941 C =10367.969301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.191 4.191 3 C 0.169 3.831 4 N -0.671 5.671 5 C 0.043 3.957 6 C 0.506 3.494 7 O -0.506 6.506 8 N -0.669 5.669 9 C 0.104 3.896 10 C -0.116 4.116 11 C -0.108 4.108 12 C -0.042 4.042 13 C 0.047 3.953 14 C -0.510 4.510 15 H 0.057 0.943 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.109 4.109 23 C -0.144 4.144 24 H 0.219 0.781 25 H 0.056 0.944 26 H 0.098 0.902 27 H 0.357 0.643 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.405 0.595 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.262 0.738 36 H 0.122 0.878 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.196 -11.797 20.212 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.191 4.191 3 C 0.042 3.958 4 N -0.304 5.304 5 C -0.089 4.089 6 C 0.292 3.708 7 O -0.379 6.379 8 N -0.315 5.315 9 C 0.012 3.988 10 C -0.136 4.136 11 C -0.126 4.126 12 C -0.043 4.043 13 C 0.011 3.989 14 C -0.549 4.549 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.128 4.128 23 C -0.164 4.164 24 H 0.235 0.765 25 H 0.074 0.926 26 H 0.116 0.884 27 H 0.177 0.823 28 H 0.082 0.918 29 H 0.126 0.874 30 H 0.240 0.760 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.140 0.860 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.824 -10.866 19.615 24.482 hybrid contribution 1.041 -0.270 0.422 1.156 sum -8.783 -11.136 20.038 24.549 Atomic orbital electron populations 1.24961 0.95979 1.00835 0.98747 1.22767 0.94198 1.00501 1.01629 1.18829 0.85038 0.99450 0.92510 1.60086 1.05880 1.59997 1.04480 1.21796 0.89550 1.01599 0.96005 1.20536 0.82248 0.78572 0.89461 1.90761 1.52933 1.46934 1.47250 1.43358 1.07274 1.62216 1.18661 1.17494 0.96928 0.96418 0.87958 1.21003 1.00276 0.95454 0.96892 1.21008 0.96856 0.99792 0.94964 1.20721 0.92312 0.92805 0.98417 1.18354 0.96732 0.95692 0.88166 1.21063 1.27562 1.13420 0.92814 0.92464 1.25024 0.96723 0.97608 0.95072 1.69963 1.44448 1.40701 0.98208 0.86537 0.80980 0.82236 0.77951 1.20621 1.21176 1.19817 1.20889 0.99918 0.97247 0.94695 1.20731 0.97496 1.01323 0.96824 0.76460 0.92614 0.88439 0.82277 0.91808 0.87436 0.76038 0.85784 0.86062 0.95265 0.95318 0.92858 0.86011 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.51 19.25 29.55 0.57 -0.94 16 2 C -0.19 -1.71 13.60 -37.12 -0.50 -2.22 16 3 C 0.17 1.20 6.16 -6.61 -0.04 1.16 16 4 N -0.67 -6.27 6.10 -118.17 -0.72 -6.99 16 5 C 0.04 0.33 6.17 -4.98 -0.03 0.30 16 6 C 0.51 6.22 7.61 -10.98 -0.08 6.13 16 7 O -0.51 -8.55 13.89 5.55 0.08 -8.48 16 8 N -0.67 -7.88 5.34 -9.86 -0.05 -7.93 16 9 C 0.10 1.69 6.28 -83.70 -0.53 1.17 16 10 C -0.12 -2.17 8.66 -39.39 -0.34 -2.51 16 11 C -0.11 -2.23 9.69 -39.61 -0.38 -2.61 16 12 C -0.04 -0.93 5.07 -104.59 -0.53 -1.46 16 13 C 0.05 1.23 5.10 -29.04 -0.15 1.08 16 14 C -0.51 -14.35 9.09 -34.44 -0.31 -14.66 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 18 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.11 -2.10 9.69 -39.61 -0.38 -2.48 16 23 C -0.14 -2.31 9.96 -39.39 -0.39 -2.71 16 24 H 0.22 1.02 7.80 -54.09 -0.42 0.60 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.36 3.63 8.41 -39.29 -0.33 3.30 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.40 3.13 8.82 -40.82 -0.36 2.77 16 31 H 0.12 2.32 6.41 -52.49 -0.34 1.98 16 32 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 33 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 34 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 37 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 331.67 15.07 5.00 5.00 Total: -1.00 -34.13 331.67 -7.98 -42.11 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.79 Total: 3.76 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -3.21 Total: -18.23 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: -0.04 Total: -40.75 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.13 -7.98 -42.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341005212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.376 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds