Wall clock time and date at job start Mon Mar 30 2020 01:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39712 * 119.99494 * 136.50838 * 3 2 1 5 5 C 1.37603 * 120.00227 * 179.75961 * 4 3 2 6 6 C 1.39736 * 119.99785 * 0.51260 * 5 4 3 7 7 C 1.47684 * 120.00603 * 179.71621 * 6 5 4 8 8 O 1.21573 * 120.00092 * 180.02562 * 7 6 5 9 9 N 1.34770 * 119.99944 * 0.02870 * 7 6 5 10 10 C 1.46501 * 120.00120 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47195 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.46827 * 180.02562 * 11 10 9 13 13 C 1.46503 * 120.00357 * 90.00223 * 12 11 10 14 14 C 1.36936 * 119.99930 * 269.99809 * 12 11 10 15 15 H 1.08005 * 120.00088 * 23.04778 * 14 12 11 16 16 C 1.38809 * 120.00146 * 203.04903 * 14 12 11 17 17 N 1.31615 * 120.00145 * 12.92712 * 16 14 12 18 18 Si 1.86800 * 120.00241 * 192.92676 * 16 14 12 19 19 H 1.48501 * 109.47167 * 59.99993 * 18 16 14 20 20 H 1.48499 * 109.47310 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47210 * 300.00294 * 18 16 14 22 22 C 1.39743 * 119.99187 * 359.74525 * 6 5 4 23 23 C 1.37602 * 119.99724 * 359.97438 * 22 6 5 24 24 H 4.51948 * 14.06395 * 359.97438 * 4 2 1 25 25 H 1.08007 * 119.99767 * 0.02562 * 4 3 2 26 26 H 1.08008 * 119.99671 * 180.23460 * 5 4 3 27 27 H 0.97006 * 120.00235 * 359.97438 * 9 7 6 28 28 H 1.08995 * 109.46978 * 299.99516 * 10 9 7 29 29 H 1.08998 * 109.47142 * 59.99833 * 10 9 7 30 30 H 1.08995 * 109.47017 * 299.99804 * 11 10 9 31 31 H 1.08998 * 109.46957 * 60.00032 * 11 10 9 32 32 H 1.08994 * 109.47227 * 95.11924 * 13 12 11 33 33 H 1.09001 * 109.47043 * 215.11831 * 13 12 11 34 34 H 1.08997 * 109.46616 * 335.11815 * 13 12 11 35 35 H 0.97000 * 120.00281 * 180.02562 * 17 16 14 36 36 H 1.08005 * 120.00750 * 179.97438 * 22 6 5 37 37 H 1.08000 * 120.00069 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3041 0.8788 -0.8328 5 6 4.6801 0.8830 -0.8293 6 6 5.3793 0.0015 -0.0006 7 6 6.8562 0.0015 -0.0014 8 8 7.4644 -0.7658 0.7193 9 7 7.5296 0.8521 -0.8008 10 6 8.9946 0.8525 -0.8012 11 6 9.5041 1.9034 -1.7897 12 7 10.9691 1.9033 -1.7904 13 6 11.7012 1.0341 -2.7150 14 6 11.6542 2.7158 -0.9269 15 1 11.1793 3.0643 -0.0216 16 6 12.9591 3.0915 -1.2150 17 7 13.4524 2.8872 -2.4180 18 14 14.0151 3.8870 0.1047 19 1 14.1550 2.9570 1.2540 20 1 15.3579 4.1905 -0.4520 21 1 13.3721 5.1451 0.5615 22 6 4.6810 -0.8806 0.8283 23 6 3.3050 -0.8805 0.8289 24 1 -1.0500 -0.0009 0.0002 25 1 2.7636 1.5574 -1.4762 26 1 5.2197 1.5645 -1.4703 27 1 7.0443 1.4641 -1.3761 28 1 9.3581 1.0878 0.1991 29 1 9.3582 -0.1313 -1.0978 30 1 9.1407 1.6677 -2.7899 31 1 9.1406 2.8873 -1.4934 32 1 11.9619 1.5956 -3.6121 33 1 12.6111 0.6758 -2.2334 34 1 11.0753 0.1843 -2.9873 35 1 14.3644 3.1494 -2.6192 36 1 5.2212 -1.5623 1.4686 37 1 2.7652 -1.5625 1.4692 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492366113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:39 Heat of formation + Delta-G solvation = 66.874347 kcal Electronic energy + Delta-G solvation = -19126.222912 eV Core-core repulsion = 16063.846079 eV Total energy + Delta-G solvation = -3062.376833 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.23364 -38.52748 -36.08656 -34.34638 -34.06171 -31.63280 -31.19130 -30.62416 -28.08343 -25.87693 -24.78951 -23.22856 -22.62024 -20.77250 -20.46072 -19.29309 -17.88460 -16.69684 -16.19683 -15.88136 -15.14948 -15.09522 -14.95985 -14.55355 -13.91642 -13.85130 -13.59448 -13.37504 -13.19101 -12.49753 -12.44600 -12.33884 -11.70642 -11.42867 -11.18365 -10.91039 -10.84557 -10.81220 -10.62947 -10.36286 -10.00750 -9.95380 -9.80366 -9.35394 -8.95730 -8.68076 -8.56728 -6.81095 -5.74991 -3.23361 0.27561 1.06149 2.34284 2.34805 3.18520 3.29962 3.39498 3.44408 3.46720 3.77970 3.84656 4.48889 4.52246 4.58619 4.73629 4.99126 5.18236 5.20256 5.38235 5.56021 5.61386 5.66846 5.79111 5.86957 5.97563 6.07476 6.09632 6.23550 6.49109 6.55516 6.62548 6.74724 6.85961 7.12197 7.35463 7.67171 7.70203 7.78980 8.33062 8.38063 9.20183 9.82476 10.30502 11.29832 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.039017 B = 0.002872 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.461303 B = 9746.753996 C = 9825.676051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.151 4.151 3 C 0.025 3.975 4 C -0.102 4.102 5 C -0.086 4.086 6 C -0.117 4.117 7 C 0.549 3.451 8 O -0.538 6.538 9 N -0.716 5.716 10 C 0.093 3.907 11 C 0.143 3.857 12 N -0.597 5.597 13 C 0.161 3.839 14 C -0.261 4.261 15 H 0.069 0.931 16 C 0.004 3.996 17 N -0.907 5.907 18 Si 0.907 3.093 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C -0.061 4.061 23 C -0.104 4.104 24 H 0.225 0.775 25 H 0.133 0.867 26 H 0.135 0.865 27 H 0.396 0.604 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.042 0.958 34 H -0.001 1.001 35 H 0.254 0.746 36 H 0.142 0.858 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.262 -4.872 1.890 23.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.151 4.151 3 C 0.025 3.975 4 C -0.120 4.120 5 C -0.104 4.104 6 C -0.121 4.121 7 C 0.335 3.665 8 O -0.416 6.416 9 N -0.368 5.368 10 C -0.032 4.032 11 C 0.015 3.985 12 N -0.320 5.320 13 C 0.016 3.984 14 C -0.390 4.390 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.551 5.551 18 Si 0.736 3.264 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.209 1.209 22 C -0.080 4.080 23 C -0.122 4.122 24 H 0.242 0.758 25 H 0.151 0.849 26 H 0.152 0.848 27 H 0.231 0.769 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.018 0.982 35 H 0.064 0.936 36 H 0.160 0.840 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.542 -5.362 2.297 23.284 hybrid contribution 0.221 0.734 0.384 0.858 sum -22.321 -4.628 2.682 22.953 Atomic orbital electron populations 1.24924 0.95782 0.99061 0.99031 1.20042 0.92026 1.01531 1.01548 1.16164 0.86660 0.97154 0.97509 1.21123 0.93784 0.98504 0.98613 1.21283 0.94032 0.97534 0.97583 1.20242 0.93597 0.98799 0.99425 1.18215 0.86729 0.81010 0.80533 1.90786 1.69756 1.39991 1.41090 1.46032 1.08885 1.38850 1.42983 1.22493 0.76166 1.01866 1.02695 1.20841 0.86388 0.95935 0.95373 1.43778 0.98597 1.46198 1.43403 1.20844 0.93794 0.89930 0.93823 1.19146 0.96139 1.24208 0.99509 0.91368 1.25035 0.98782 0.99463 0.96199 1.70059 1.15686 1.51092 1.18280 0.86306 0.79626 0.79259 0.81165 1.20960 1.21590 1.20868 1.21231 0.93332 0.96815 0.96591 1.21175 0.93770 0.98500 0.98712 0.75817 0.84925 0.84759 0.76918 0.91319 0.92003 0.94047 0.92891 0.94836 0.93911 0.98235 0.93614 0.83977 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 19.25 29.55 0.57 -0.63 16 2 C -0.15 -1.39 13.23 -38.83 -0.51 -1.91 16 3 C 0.03 0.25 5.73 -106.87 -0.61 -0.36 16 4 C -0.10 -0.92 9.73 -39.26 -0.38 -1.30 16 5 C -0.09 -0.82 9.52 -39.25 -0.37 -1.19 16 6 C -0.12 -1.43 5.88 -104.92 -0.62 -2.04 16 7 C 0.55 8.50 7.77 -12.41 -0.10 8.40 16 8 O -0.54 -10.44 16.33 5.30 0.09 -10.35 16 9 N -0.72 -10.38 5.50 -61.30 -0.34 -10.71 16 10 C 0.09 1.70 6.00 -4.04 -0.02 1.68 16 11 C 0.14 2.80 5.76 -4.04 -0.02 2.77 16 12 N -0.60 -14.91 2.92 -181.12 -0.53 -15.44 16 13 C 0.16 3.95 8.98 59.85 0.54 4.49 16 14 C -0.26 -7.14 9.65 -15.06 -0.15 -7.29 16 15 H 0.07 1.83 7.86 -52.48 -0.41 1.41 16 16 C 0.00 0.11 5.10 -17.43 -0.09 0.02 16 17 N -0.91 -26.39 10.71 55.49 0.59 -25.80 16 18 Si 0.91 21.94 29.57 -169.99 -5.03 16.91 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C -0.06 -0.68 9.57 -39.25 -0.38 -1.06 16 23 C -0.10 -1.00 9.73 -39.26 -0.38 -1.38 16 24 H 0.23 0.68 7.80 -54.09 -0.42 0.26 16 25 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 26 H 0.13 0.98 6.38 -52.48 -0.34 0.64 16 27 H 0.40 4.41 6.49 -40.82 -0.26 4.15 16 28 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 31 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 32 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 33 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 34 H 0.00 -0.02 8.03 -51.93 -0.42 -0.44 16 35 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 36 H 0.14 1.60 7.64 -52.48 -0.40 1.20 16 37 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 327.97 15.07 4.94 4.94 Total: -1.00 -33.10 327.97 -7.48 -40.58 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -4.68 Total: -0.32 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -2.53 Total: 0.19 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.27 Total: -51.95 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.10 -7.48 -40.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492366113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.452 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds