Wall clock time and date at job start Mon Mar 30 2020 01:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39712 * 119.99494 * 136.50838 * 3 2 1 5 5 C 1.37603 * 120.00227 * 179.75961 * 4 3 2 6 6 C 1.39736 * 119.99785 * 0.51260 * 5 4 3 7 7 C 1.47684 * 120.00603 * 179.71621 * 6 5 4 8 8 O 1.21573 * 120.00092 * 180.02562 * 7 6 5 9 9 N 1.34770 * 119.99944 * 0.02870 * 7 6 5 10 10 C 1.46501 * 120.00120 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47195 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.46827 * 180.02562 * 11 10 9 13 13 C 1.46503 * 120.00357 * 90.00223 * 12 11 10 14 14 C 1.36936 * 119.99930 * 269.99809 * 12 11 10 15 15 H 1.08005 * 120.00088 * 23.04778 * 14 12 11 16 16 C 1.38809 * 120.00146 * 203.04903 * 14 12 11 17 17 N 1.31615 * 120.00145 * 12.92712 * 16 14 12 18 18 Si 1.86800 * 120.00241 * 192.92676 * 16 14 12 19 19 H 1.48501 * 109.47167 * 59.99993 * 18 16 14 20 20 H 1.48499 * 109.47310 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47210 * 300.00294 * 18 16 14 22 22 C 1.39743 * 119.99187 * 359.74525 * 6 5 4 23 23 C 1.37602 * 119.99724 * 359.97438 * 22 6 5 24 24 H 4.51948 * 14.06395 * 359.97438 * 4 2 1 25 25 H 1.08007 * 119.99767 * 0.02562 * 4 3 2 26 26 H 1.08008 * 119.99671 * 180.23460 * 5 4 3 27 27 H 0.97006 * 120.00235 * 359.97438 * 9 7 6 28 28 H 1.08995 * 109.46978 * 299.99516 * 10 9 7 29 29 H 1.08998 * 109.47142 * 59.99833 * 10 9 7 30 30 H 1.08995 * 109.47017 * 299.99804 * 11 10 9 31 31 H 1.08998 * 109.46957 * 60.00032 * 11 10 9 32 32 H 1.08994 * 109.47227 * 95.11924 * 13 12 11 33 33 H 1.09001 * 109.47043 * 215.11831 * 13 12 11 34 34 H 1.08997 * 109.46616 * 335.11815 * 13 12 11 35 35 H 0.97000 * 120.00281 * 180.02562 * 17 16 14 36 36 H 1.08005 * 120.00750 * 179.97438 * 22 6 5 37 37 H 1.08000 * 120.00069 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3041 0.8788 -0.8328 5 6 4.6801 0.8830 -0.8293 6 6 5.3793 0.0015 -0.0006 7 6 6.8562 0.0015 -0.0014 8 8 7.4644 -0.7658 0.7193 9 7 7.5296 0.8521 -0.8008 10 6 8.9946 0.8525 -0.8012 11 6 9.5041 1.9034 -1.7897 12 7 10.9691 1.9033 -1.7904 13 6 11.7012 1.0341 -2.7150 14 6 11.6542 2.7158 -0.9269 15 1 11.1793 3.0643 -0.0216 16 6 12.9591 3.0915 -1.2150 17 7 13.4524 2.8872 -2.4180 18 14 14.0151 3.8870 0.1047 19 1 14.1550 2.9570 1.2540 20 1 15.3579 4.1905 -0.4520 21 1 13.3721 5.1451 0.5615 22 6 4.6810 -0.8806 0.8283 23 6 3.3050 -0.8805 0.8289 24 1 -1.0500 -0.0009 0.0002 25 1 2.7636 1.5574 -1.4762 26 1 5.2197 1.5645 -1.4703 27 1 7.0443 1.4641 -1.3761 28 1 9.3581 1.0878 0.1991 29 1 9.3582 -0.1313 -1.0978 30 1 9.1407 1.6677 -2.7899 31 1 9.1406 2.8873 -1.4934 32 1 11.9619 1.5956 -3.6121 33 1 12.6111 0.6758 -2.2334 34 1 11.0753 0.1843 -2.9873 35 1 14.3644 3.1494 -2.6192 36 1 5.2212 -1.5623 1.4686 37 1 2.7652 -1.5625 1.4692 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492366113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:38 Heat of formation + Delta-G solvation = 46.409217 kcal Electronic energy + Delta-G solvation = -19127.110347 eV Core-core repulsion = 16063.846079 eV Total energy + Delta-G solvation = -3063.264268 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.27845 -39.53163 -37.85042 -35.83578 -34.81365 -33.35043 -32.10458 -31.56153 -29.61888 -27.92064 -25.96309 -24.56852 -23.53521 -22.39217 -21.74096 -19.94833 -19.06588 -18.60294 -17.42268 -16.76000 -16.54837 -16.52955 -15.91601 -15.80314 -15.49823 -15.10196 -14.83223 -14.53010 -14.41685 -14.12352 -13.97863 -13.29111 -13.05486 -12.77359 -12.69329 -12.51500 -12.39392 -12.20477 -12.13035 -11.96764 -11.81635 -11.43741 -11.15619 -10.65695 -10.18883 -10.09519 -9.58834 -8.84284 -7.85191 -5.35645 -0.53440 0.32158 1.46017 1.47890 1.49369 1.55381 1.76506 2.07405 2.27915 2.52137 2.97891 3.27925 3.28733 3.62449 3.81186 3.84508 3.91704 4.22181 4.25704 4.28217 4.43568 4.55955 4.65708 4.81267 4.91799 4.95989 5.04192 5.10450 5.23867 5.29432 5.33068 5.35072 5.44718 5.61859 5.69627 5.76261 6.30620 6.51333 6.55942 7.12110 7.16702 7.82814 8.25548 9.17832 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.039017 B = 0.002872 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.461303 B = 9746.753996 C = 9825.676051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.207 4.207 3 C 0.027 3.973 4 C -0.103 4.103 5 C -0.076 4.076 6 C -0.140 4.140 7 C 0.549 3.451 8 O -0.586 6.586 9 N -0.704 5.704 10 C 0.114 3.886 11 C 0.147 3.853 12 N -0.616 5.616 13 C 0.173 3.827 14 C -0.268 4.268 15 H 0.070 0.930 16 C -0.051 4.051 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.283 1.283 20 H -0.292 1.292 21 H -0.272 1.272 22 C -0.069 4.069 23 C -0.107 4.107 24 H 0.261 0.739 25 H 0.157 0.843 26 H 0.158 0.842 27 H 0.415 0.585 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.012 0.988 33 H 0.013 0.987 34 H 0.032 0.968 35 H 0.250 0.750 36 H 0.132 0.868 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.323 -4.142 1.728 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.207 4.207 3 C 0.027 3.973 4 C -0.121 4.121 5 C -0.094 4.094 6 C -0.143 4.143 7 C 0.338 3.662 8 O -0.468 6.468 9 N -0.356 5.356 10 C -0.013 4.013 11 C 0.019 3.981 12 N -0.340 5.340 13 C 0.028 3.972 14 C -0.398 4.398 15 H 0.088 0.912 16 C -0.246 4.246 17 N -0.582 5.582 18 Si 0.796 3.204 19 H -0.209 1.209 20 H -0.219 1.219 21 H -0.198 1.198 22 C -0.088 4.088 23 C -0.125 4.125 24 H 0.277 0.723 25 H 0.175 0.825 26 H 0.176 0.824 27 H 0.253 0.747 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.031 0.969 33 H 0.032 0.968 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.150 0.850 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -25.665 -4.613 2.124 26.163 hybrid contribution 0.925 0.469 0.434 1.125 sum -24.740 -4.143 2.558 25.215 Atomic orbital electron populations 1.25854 0.96528 0.96288 0.96229 1.20270 0.92476 1.03949 1.03966 1.16421 0.87580 0.96513 0.96775 1.21412 0.93510 0.98579 0.98605 1.21490 0.94455 0.96736 0.96713 1.20006 0.91323 1.01122 1.01856 1.18728 0.88156 0.79926 0.79401 1.90757 1.71029 1.41940 1.43058 1.45762 1.07314 1.39223 1.43289 1.21937 0.78343 1.00411 1.00574 1.20961 0.83466 0.96656 0.96969 1.44022 1.00855 1.46007 1.43092 1.20606 0.93436 0.90557 0.92581 1.19457 0.96653 1.23733 0.99961 0.91218 1.25790 1.00052 1.00720 0.98079 1.70209 1.15617 1.52521 1.19856 0.85332 0.77804 0.78617 0.78631 1.20920 1.21853 1.19774 1.21242 0.94126 0.96819 0.96656 1.21313 0.93020 0.99009 0.99143 0.72254 0.82507 0.82419 0.74665 0.94093 0.93535 0.91441 0.92037 0.96932 0.96818 0.94997 0.94129 0.84971 0.83363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 19.25 74.32 1.43 0.06 16 2 C -0.21 -3.26 13.23 30.02 0.40 -2.87 16 3 C 0.03 0.49 5.73 -21.32 -0.12 0.36 16 4 C -0.10 -1.59 9.73 22.48 0.22 -1.38 16 5 C -0.08 -1.28 9.52 22.48 0.21 -1.07 16 6 C -0.14 -3.32 5.88 -20.06 -0.12 -3.44 16 7 C 0.55 17.05 7.77 86.74 0.67 17.72 16 8 O -0.59 -23.54 16.33 -3.95 -0.06 -23.61 16 9 N -0.70 -19.71 5.50 -466.13 -2.57 -22.27 16 10 C 0.11 4.13 6.00 86.38 0.52 4.65 16 11 C 0.15 5.53 5.76 86.38 0.50 6.03 16 12 N -0.62 -30.70 2.92 -726.94 -2.12 -32.83 16 13 C 0.17 8.57 8.98 127.77 1.15 9.72 16 14 C -0.27 -14.73 9.65 84.03 0.81 -13.92 16 15 H 0.07 3.73 7.86 -2.91 -0.02 3.71 16 16 C -0.05 -2.87 5.10 84.86 0.43 -2.44 16 17 N -0.94 -55.37 10.71 21.65 0.23 -55.14 16 18 Si 0.97 45.44 29.57 68.60 2.03 47.47 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 22 C -0.07 -1.57 9.57 22.48 0.22 -1.35 16 23 C -0.11 -1.97 9.73 22.48 0.22 -1.75 16 24 H 0.26 0.28 7.80 -4.42 -0.03 0.25 16 25 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 26 H 0.16 1.80 6.38 -2.91 -0.02 1.78 16 27 H 0.42 8.31 6.49 -92.70 -0.60 7.71 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 31 H 0.06 2.23 8.04 -2.39 -0.02 2.21 16 32 H 0.01 0.66 7.34 -2.39 -0.02 0.65 16 33 H 0.01 0.72 7.34 -2.39 -0.02 0.70 16 34 H 0.03 1.33 8.03 -2.39 -0.02 1.32 16 35 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 36 H 0.13 3.15 7.64 -2.91 -0.02 3.13 16 37 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -73.08 327.97 4.51 -68.57 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 0.47 Total: 7.47 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 6.53 Total: 10.34 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -4.46 Total: -110.24 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.06 Total: -23.61 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.08 4.51 -68.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492366113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.978 kcal (2) G-P(sol) polarization free energy of solvation -73.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds