Wall clock time and date at job start Mon Mar 30 2020 01:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47269 * 2 1 4 4 H 1.09001 * 109.46579 * 304.99636 * 3 2 1 5 5 C 1.47202 * 109.47077 * 184.99970 * 3 2 1 6 6 N 3.43546 * 154.82672 * 351.56682 * 2 1 3 7 7 N 1.46495 * 109.47462 * 64.99697 * 3 2 1 8 8 C 1.34780 * 119.99895 * 205.00012 * 7 3 2 9 9 O 1.21283 * 120.00095 * 0.02562 * 8 7 3 10 10 C 1.50698 * 119.99923 * 179.97438 * 8 7 3 11 11 H 1.09000 * 109.47005 * 60.00097 * 10 8 7 12 12 C 1.50699 * 109.47253 * 300.00122 * 10 8 7 13 13 H 1.08006 * 120.00609 * 325.10043 * 12 10 8 14 14 C 1.37883 * 119.99985 * 145.09640 * 12 10 8 15 15 N 1.31512 * 120.00156 * 184.98757 * 14 12 10 16 16 Si 1.86795 * 119.99801 * 4.98507 * 14 12 10 17 17 H 1.48505 * 109.47123 * 84.66807 * 16 14 12 18 18 H 1.48499 * 109.47347 * 204.66753 * 16 14 12 19 19 H 1.48500 * 109.47489 * 324.66825 * 16 14 12 20 20 C 1.50694 * 109.47069 * 180.02562 * 10 8 7 21 21 C 1.38236 * 120.00274 * 65.02544 * 20 10 8 22 22 C 1.38238 * 120.00172 * 179.81286 * 21 20 10 23 23 C 1.38235 * 119.99780 * 0.39238 * 22 21 20 24 24 C 1.38240 * 119.99960 * 359.85699 * 23 22 21 25 25 C 1.38225 * 119.99959 * 359.95643 * 24 23 22 26 26 H 1.08994 * 109.47171 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46958 * 60.00107 * 1 2 3 28 28 H 1.09005 * 109.46890 * 300.00391 * 1 2 3 29 29 H 1.09008 * 109.46570 * 119.99518 * 2 1 3 30 30 H 1.08993 * 109.46916 * 239.99222 * 2 1 3 31 31 H 0.96996 * 120.00200 * 24.99977 * 7 3 2 32 32 H 0.96998 * 120.00385 * 180.02562 * 15 14 12 33 33 H 1.08003 * 119.99972 * 359.97438 * 21 20 10 34 34 H 1.08000 * 119.99810 * 180.22766 * 22 21 20 35 35 H 1.08004 * 119.99893 * 179.83638 * 23 22 21 36 36 H 1.07999 * 119.99230 * 179.97438 * 24 23 22 37 37 H 1.08004 * 119.99734 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5071 1.4442 -0.1210 6 7 4.6392 1.4455 -0.2143 7 7 1.6525 2.0976 1.2517 8 6 1.5258 3.4385 1.2994 9 8 1.7321 4.1029 0.3058 10 6 1.1265 4.1124 2.5868 11 1 1.8648 3.8901 3.3573 12 6 -0.2233 3.6033 3.0227 13 1 -0.9716 3.3563 2.2841 14 6 -0.5030 3.4528 4.3644 15 7 -1.6430 2.9171 4.7424 16 14 0.7374 4.0098 5.6452 17 1 0.5589 5.4603 5.9092 18 1 0.5267 3.2483 6.9025 19 1 2.1128 3.7639 5.1422 20 6 1.0558 5.6024 2.3730 21 6 0.1118 6.1335 1.5142 22 6 0.0444 7.5006 1.3211 23 6 0.9265 8.3361 1.9805 24 6 1.8740 7.8045 2.8354 25 6 1.9388 6.4378 3.0315 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.4871 1.5663 2.0462 32 1 -1.8400 2.8116 5.6863 33 1 -0.5750 5.4804 0.9961 34 1 -0.6956 7.9158 0.6529 35 1 0.8756 9.4040 1.8276 36 1 2.5633 8.4573 3.3503 37 1 2.6793 6.0225 3.6990 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521655824.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:02 Heat of formation + Delta-G solvation = 4.264757 kcal Electronic energy + Delta-G solvation = -20597.822307 eV Core-core repulsion = 17532.730518 eV Total energy + Delta-G solvation = -3065.091789 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.66928 -38.25933 -36.75804 -35.00410 -33.73175 -31.94439 -31.50597 -30.15603 -28.21636 -26.83720 -23.66571 -21.99656 -21.85248 -21.24889 -19.52563 -18.00089 -17.19904 -16.46203 -16.27082 -15.84119 -14.67509 -14.47172 -14.06342 -13.90224 -13.69056 -13.44256 -13.25146 -13.13924 -12.74821 -12.64259 -12.48581 -12.15073 -11.95154 -11.91253 -11.61698 -11.23206 -11.09419 -11.03357 -10.88606 -10.50085 -10.28039 -9.96429 -9.60641 -9.11553 -8.92064 -8.76894 -8.15962 -7.84959 -6.36596 -4.41287 2.12255 2.18707 2.69848 2.88853 3.11266 3.19517 3.25026 3.33696 3.85064 4.16436 4.17243 4.60364 4.82758 4.94864 5.03194 5.31833 5.52333 5.56109 5.59262 5.69015 5.71675 5.91031 5.95822 5.96290 6.13173 6.24369 6.29178 6.41849 6.44308 6.70716 6.79017 6.83451 7.14836 7.21032 7.22438 7.54791 7.64854 7.76721 8.01385 8.16262 8.62436 8.90176 9.21509 10.73837 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013854 B = 0.007594 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.543322 B = 3686.424145 C = 4659.944442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.240 3.760 4 H 0.127 0.873 5 C 0.202 3.798 6 N -0.436 5.436 7 N -0.717 5.717 8 C 0.539 3.461 9 O -0.552 6.552 10 C 0.020 3.980 11 H 0.075 0.925 12 C -0.512 4.512 13 H 0.086 0.914 14 C 0.088 3.912 15 N -0.880 5.880 16 Si 0.863 3.137 17 H -0.266 1.266 18 H -0.285 1.285 19 H -0.262 1.262 20 C -0.030 4.030 21 C -0.073 4.073 22 C -0.129 4.129 23 C -0.142 4.142 24 C -0.128 4.128 25 C -0.137 4.137 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.414 0.586 32 H 0.269 0.731 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.682 -1.793 -4.863 5.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C 0.130 3.870 4 H 0.144 0.856 5 C -0.118 4.118 6 N -0.113 5.113 7 N -0.372 5.372 8 C 0.328 3.672 9 O -0.429 6.429 10 C -0.002 4.002 11 H 0.092 0.908 12 C -0.549 4.549 13 H 0.104 0.896 14 C -0.118 4.118 15 N -0.515 5.515 16 Si 0.690 3.310 17 H -0.191 1.191 18 H -0.211 1.211 19 H -0.188 1.188 20 C -0.031 4.031 21 C -0.091 4.091 22 C -0.147 4.147 23 C -0.160 4.160 24 C -0.146 4.146 25 C -0.155 4.155 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.251 0.749 32 H 0.080 0.920 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.377 -1.362 -5.531 7.184 hybrid contribution 0.069 0.153 1.320 1.331 sum 4.446 -1.209 -4.211 6.242 Atomic orbital electron populations 1.21785 0.93405 1.02215 1.03768 1.21752 0.97968 0.92664 1.03670 1.18361 0.80636 0.96202 0.91780 0.85605 1.30084 0.95864 0.92627 0.93190 1.81104 1.13187 1.08868 1.08112 1.45952 1.71107 1.07970 1.12137 1.21342 0.73312 0.81151 0.91361 1.90626 1.50510 1.64212 1.37551 1.18580 1.00401 0.88986 0.92199 0.90760 1.20506 0.96294 1.44717 0.93365 0.89648 1.24950 0.95222 0.93460 0.98125 1.69845 1.23013 1.41667 1.16979 0.87064 0.82183 0.80286 0.81447 1.19146 1.21090 1.18751 1.20055 0.93138 0.96070 0.93827 1.20840 0.97290 0.94133 0.96802 1.21038 0.99313 0.94003 1.00357 1.20872 0.97289 0.98742 0.99138 1.20885 0.99236 0.94938 0.99581 1.20979 0.99466 0.93695 1.01349 0.92212 0.92315 0.90580 0.90505 0.90140 0.74896 0.92044 0.86381 0.87076 0.87318 0.87275 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.80 37.16 0.36 -1.21 16 2 C -0.12 -1.18 5.43 -26.73 -0.15 -1.33 16 3 C 0.24 3.16 2.41 -70.72 -0.17 2.99 16 4 H 0.13 1.67 7.58 -51.93 -0.39 1.28 16 5 C 0.20 3.12 14.93 -20.76 -0.31 2.81 16 6 N -0.44 -7.66 18.54 42.15 0.78 -6.88 16 7 N -0.72 -11.41 4.40 -56.55 -0.25 -11.65 16 8 C 0.54 10.69 6.98 -10.98 -0.08 10.61 16 9 O -0.55 -12.09 15.03 5.55 0.08 -12.00 16 10 C 0.02 0.42 1.89 -94.08 -0.18 0.25 16 11 H 0.07 1.58 4.89 -51.93 -0.25 1.33 16 12 C -0.51 -12.14 8.06 -34.44 -0.28 -12.42 16 13 H 0.09 2.20 8.06 -52.48 -0.42 1.78 16 14 C 0.09 2.19 5.47 -17.82 -0.10 2.09 16 15 N -0.88 -23.50 13.96 55.43 0.77 -22.73 16 16 Si 0.86 19.20 27.18 -169.99 -4.62 14.58 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 19 H -0.26 -5.46 6.06 56.52 0.34 -5.12 16 20 C -0.03 -0.64 4.09 -104.63 -0.43 -1.07 16 21 C -0.07 -1.51 8.25 -39.58 -0.33 -1.84 16 22 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 23 C -0.14 -2.45 10.05 -39.58 -0.40 -2.85 16 24 C -0.13 -2.30 10.05 -39.59 -0.40 -2.69 16 25 C -0.14 -2.75 9.46 -39.59 -0.37 -3.12 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.95 7.75 -51.93 -0.40 0.55 16 29 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.41 6.14 8.49 -40.82 -0.35 5.79 16 32 H 0.27 6.84 8.31 -40.82 -0.34 6.51 16 33 H 0.12 2.50 7.93 -52.48 -0.42 2.08 16 34 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 36 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.11 2.02 7.95 -52.48 -0.42 1.60 16 LS Contribution 324.00 15.07 4.88 4.88 Total: -1.00 -29.43 324.00 -6.37 -35.80 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.81 Total: 8.54 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -3.21 Total: -10.54 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 1.31 Total: -41.26 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.08 Total: -12.00 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.62 Total: 14.58 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.43 -6.37 -35.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521655824.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.066 kcal (2) G-P(sol) polarization free energy of solvation -29.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds