Wall clock time and date at job start Mon Mar 30 2020 01:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47269 * 2 1 4 4 H 1.09001 * 109.46579 * 304.99636 * 3 2 1 5 5 C 1.47202 * 109.47077 * 184.99970 * 3 2 1 6 6 N 3.43546 * 154.82672 * 351.56682 * 2 1 3 7 7 N 1.46495 * 109.47462 * 64.99697 * 3 2 1 8 8 C 1.34780 * 119.99895 * 205.00012 * 7 3 2 9 9 O 1.21283 * 120.00095 * 0.02562 * 8 7 3 10 10 C 1.50698 * 119.99923 * 179.97438 * 8 7 3 11 11 H 1.09000 * 109.47005 * 60.00097 * 10 8 7 12 12 C 1.50699 * 109.47253 * 300.00122 * 10 8 7 13 13 H 1.08006 * 120.00609 * 325.10043 * 12 10 8 14 14 C 1.37883 * 119.99985 * 145.09640 * 12 10 8 15 15 N 1.31512 * 120.00156 * 184.98757 * 14 12 10 16 16 Si 1.86795 * 119.99801 * 4.98507 * 14 12 10 17 17 H 1.48505 * 109.47123 * 84.66807 * 16 14 12 18 18 H 1.48499 * 109.47347 * 204.66753 * 16 14 12 19 19 H 1.48500 * 109.47489 * 324.66825 * 16 14 12 20 20 C 1.50694 * 109.47069 * 180.02562 * 10 8 7 21 21 C 1.38236 * 120.00274 * 65.02544 * 20 10 8 22 22 C 1.38238 * 120.00172 * 179.81286 * 21 20 10 23 23 C 1.38235 * 119.99780 * 0.39238 * 22 21 20 24 24 C 1.38240 * 119.99960 * 359.85699 * 23 22 21 25 25 C 1.38225 * 119.99959 * 359.95643 * 24 23 22 26 26 H 1.08994 * 109.47171 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46958 * 60.00107 * 1 2 3 28 28 H 1.09005 * 109.46890 * 300.00391 * 1 2 3 29 29 H 1.09008 * 109.46570 * 119.99518 * 2 1 3 30 30 H 1.08993 * 109.46916 * 239.99222 * 2 1 3 31 31 H 0.96996 * 120.00200 * 24.99977 * 7 3 2 32 32 H 0.96998 * 120.00385 * 180.02562 * 15 14 12 33 33 H 1.08003 * 119.99972 * 359.97438 * 21 20 10 34 34 H 1.08000 * 119.99810 * 180.22766 * 22 21 20 35 35 H 1.08004 * 119.99893 * 179.83638 * 23 22 21 36 36 H 1.07999 * 119.99230 * 179.97438 * 24 23 22 37 37 H 1.08004 * 119.99734 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5071 1.4442 -0.1210 6 7 4.6392 1.4455 -0.2143 7 7 1.6525 2.0976 1.2517 8 6 1.5258 3.4385 1.2994 9 8 1.7321 4.1029 0.3058 10 6 1.1265 4.1124 2.5868 11 1 1.8648 3.8901 3.3573 12 6 -0.2233 3.6033 3.0227 13 1 -0.9716 3.3563 2.2841 14 6 -0.5030 3.4528 4.3644 15 7 -1.6430 2.9171 4.7424 16 14 0.7374 4.0098 5.6452 17 1 0.5589 5.4603 5.9092 18 1 0.5267 3.2483 6.9025 19 1 2.1128 3.7639 5.1422 20 6 1.0558 5.6024 2.3730 21 6 0.1118 6.1335 1.5142 22 6 0.0444 7.5006 1.3211 23 6 0.9265 8.3361 1.9805 24 6 1.8740 7.8045 2.8354 25 6 1.9388 6.4378 3.0315 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.4871 1.5663 2.0462 32 1 -1.8400 2.8116 5.6863 33 1 -0.5750 5.4804 0.9961 34 1 -0.6956 7.9158 0.6529 35 1 0.8756 9.4040 1.8276 36 1 2.5633 8.4573 3.3503 37 1 2.6793 6.0225 3.6990 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521655824.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:02 Heat of formation + Delta-G solvation = -12.880262 kcal Electronic energy + Delta-G solvation = -20598.565771 eV Core-core repulsion = 17532.730518 eV Total energy + Delta-G solvation = -3065.835253 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.17424 -39.66713 -38.10909 -36.26572 -35.50260 -33.43404 -32.94429 -31.61446 -29.66721 -28.13839 -25.42122 -23.38568 -22.96470 -22.62788 -21.04414 -19.29526 -19.02333 -18.01222 -17.63392 -17.17658 -16.35105 -15.98269 -15.52159 -15.18214 -14.98658 -14.85753 -14.57887 -14.43359 -14.37369 -14.09434 -13.85373 -13.74796 -13.41499 -13.07179 -12.95963 -12.71889 -12.58373 -12.05605 -12.01675 -11.92815 -11.76869 -11.61043 -11.37535 -10.88915 -10.56725 -10.31770 -9.63286 -9.36091 -8.30476 -6.36819 0.64867 0.71430 1.33630 1.40575 1.42515 1.44418 1.65165 1.76830 2.32115 2.55120 2.93044 3.00744 3.18103 3.82747 4.06445 4.12487 4.22600 4.28565 4.36995 4.40747 4.52685 4.61523 4.66732 4.83319 4.90578 4.91803 5.16967 5.20989 5.22368 5.34038 5.41269 5.50064 5.58096 5.70853 5.75539 5.96357 6.23649 6.31857 6.40224 6.60077 6.66630 7.27907 7.36059 8.82969 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013854 B = 0.007594 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.543322 B = 3686.424145 C = 4659.944442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C 0.240 3.760 4 H 0.128 0.872 5 C 0.220 3.780 6 N -0.471 5.471 7 N -0.707 5.707 8 C 0.538 3.462 9 O -0.575 6.575 10 C 0.020 3.980 11 H 0.076 0.924 12 C -0.493 4.493 13 H 0.053 0.947 14 C 0.045 3.955 15 N -0.923 5.923 16 Si 0.910 3.090 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.240 1.240 20 C -0.058 4.058 21 C -0.100 4.100 22 C -0.132 4.132 23 C -0.138 4.138 24 C -0.128 4.128 25 C -0.157 4.157 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.420 0.580 32 H 0.269 0.731 33 H 0.099 0.901 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.895 -1.063 -5.031 6.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C 0.132 3.868 4 H 0.146 0.854 5 C -0.099 4.099 6 N -0.149 5.149 7 N -0.361 5.361 8 C 0.327 3.673 9 O -0.454 6.454 10 C -0.002 4.002 11 H 0.094 0.906 12 C -0.530 4.530 13 H 0.071 0.929 14 C -0.156 4.156 15 N -0.561 5.561 16 Si 0.735 3.265 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.164 1.164 20 C -0.059 4.059 21 C -0.118 4.118 22 C -0.150 4.150 23 C -0.155 4.155 24 C -0.146 4.146 25 C -0.175 4.175 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.126 0.874 31 H 0.258 0.742 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.154 0.846 35 H 0.166 0.834 36 H 0.161 0.839 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.610 -0.663 -5.708 8.030 hybrid contribution -0.350 -0.018 1.271 1.318 sum 5.260 -0.681 -4.437 6.915 Atomic orbital electron populations 1.21755 0.93715 1.03059 1.02408 1.21778 0.97398 0.90189 1.05613 1.18708 0.79511 0.98264 0.90340 0.85425 1.30338 0.95989 0.91441 0.92124 1.81122 1.14290 1.10246 1.09226 1.45863 1.69819 1.06875 1.13527 1.21069 0.73418 0.82311 0.90495 1.90605 1.51821 1.65075 1.37922 1.18524 0.98761 0.89812 0.93053 0.90608 1.20421 0.96682 1.43444 0.92485 0.92894 1.25524 0.96541 0.93727 0.99825 1.69954 1.24979 1.43902 1.17253 0.86296 0.81586 0.79210 0.79373 1.19880 1.21076 1.16378 1.20123 0.94508 0.95982 0.95275 1.20875 0.97693 0.95476 0.97752 1.21383 1.00043 0.93039 1.00562 1.21342 0.95929 1.00596 0.97670 1.21331 0.99590 0.94435 0.99219 1.21228 0.99665 0.94894 1.01685 0.90277 0.92187 0.93434 0.89360 0.87351 0.74246 0.92130 0.88266 0.84560 0.83426 0.83881 0.86658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.80 71.98 0.71 -2.21 16 2 C -0.11 -1.93 5.43 30.60 0.17 -1.76 16 3 C 0.24 6.09 2.41 43.19 0.10 6.19 16 4 H 0.13 3.29 7.58 -2.39 -0.02 3.27 16 5 C 0.22 6.53 14.93 89.44 1.34 7.87 16 6 N -0.47 -16.13 18.54 20.01 0.37 -15.76 16 7 N -0.71 -22.36 4.40 -451.21 -1.98 -24.34 16 8 C 0.54 21.55 6.98 87.66 0.61 22.17 16 9 O -0.57 -25.44 15.03 -3.04 -0.05 -25.49 16 10 C 0.02 0.86 1.89 -13.03 -0.02 0.84 16 11 H 0.08 3.19 4.89 -2.39 -0.01 3.18 16 12 C -0.49 -24.06 8.06 25.60 0.21 -23.86 16 13 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 14 C 0.04 2.28 5.47 84.66 0.46 2.74 16 15 N -0.92 -50.68 13.96 21.45 0.30 -50.38 16 16 Si 0.91 39.35 27.18 68.60 1.86 41.22 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.24 -9.38 6.06 99.48 0.60 -8.78 16 20 C -0.06 -2.49 4.09 -19.87 -0.08 -2.58 16 21 C -0.10 -4.20 8.25 22.27 0.18 -4.02 16 22 C -0.13 -4.63 10.05 22.27 0.22 -4.41 16 23 C -0.14 -4.28 10.05 22.27 0.22 -4.06 16 24 C -0.13 -4.19 10.05 22.27 0.22 -3.96 16 25 C -0.16 -6.06 9.46 22.27 0.21 -5.85 16 26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.05 1.19 7.75 -2.38 -0.02 1.17 16 29 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.42 12.34 8.49 -92.71 -0.79 11.56 16 32 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 33 H 0.10 4.41 7.93 -2.91 -0.02 4.38 16 34 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 35 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 36 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 37 H 0.12 4.14 7.95 -2.91 -0.02 4.12 16 Total: -1.00 -64.76 324.00 5.25 -59.51 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.19 Total: 28.13 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 4.55 Total: -12.90 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -1.31 Total: -90.48 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.05 Total: -25.49 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 1.86 Total: 41.22 kcal Total: -64.76 5.25 -59.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521655824.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.631 kcal (2) G-P(sol) polarization free energy of solvation -64.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds