Wall clock time and date at job start Mon Mar 30 2020 01:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47398 * 2 1 4 4 H 1.09000 * 109.46923 * 305.00226 * 3 2 1 5 5 C 1.47191 * 109.47285 * 184.99953 * 3 2 1 6 6 N 3.43543 * 154.82691 * 351.56710 * 2 1 3 7 7 N 1.46504 * 109.46816 * 64.99560 * 3 2 1 8 8 C 1.34772 * 120.00034 * 204.99801 * 7 3 2 9 9 O 1.21285 * 120.00122 * 0.02562 * 8 7 3 10 10 C 1.50700 * 120.00228 * 180.02562 * 8 7 3 11 11 H 1.09005 * 109.46885 * 300.00302 * 10 8 7 12 12 C 1.50703 * 109.47218 * 59.99620 * 10 8 7 13 13 H 1.07993 * 120.00736 * 235.34460 * 12 10 8 14 14 C 1.37882 * 119.99228 * 55.34871 * 12 10 8 15 15 N 1.31513 * 120.00377 * 1.97685 * 14 12 10 16 16 Si 1.86803 * 119.99466 * 181.97608 * 14 12 10 17 17 H 1.48498 * 109.47425 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46928 * 120.00062 * 16 14 12 19 19 H 1.48500 * 109.47087 * 239.99950 * 16 14 12 20 20 C 1.50698 * 109.47578 * 180.02562 * 10 8 7 21 21 C 1.38230 * 120.00280 * 226.94786 * 20 10 8 22 22 C 1.38234 * 120.00102 * 179.78787 * 21 20 10 23 23 C 1.38231 * 119.99763 * 0.44098 * 22 21 20 24 24 C 1.38235 * 120.00433 * 359.80994 * 23 22 21 25 25 C 1.38232 * 119.99520 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.46829 * 59.99920 * 1 2 3 27 27 H 1.09000 * 109.47330 * 299.99909 * 1 2 3 28 28 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47057 * 120.00571 * 2 1 3 30 30 H 1.09000 * 109.46855 * 239.99853 * 2 1 3 31 31 H 0.96998 * 119.99527 * 25.00643 * 7 3 2 32 32 H 0.97005 * 119.99857 * 180.02562 * 15 14 12 33 33 H 1.07999 * 119.99908 * 359.97438 * 21 20 10 34 34 H 1.08001 * 119.99882 * 180.27356 * 22 21 20 35 35 H 1.08006 * 119.99690 * 179.83931 * 23 22 21 36 36 H 1.07995 * 120.00641 * 180.02562 * 24 23 22 37 37 H 1.08008 * 119.99892 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5070 1.4442 -0.1209 6 7 4.6392 1.4455 -0.2143 7 7 1.6524 2.0974 1.2518 8 6 1.5257 3.4383 1.2996 9 8 1.7321 4.1028 0.3062 10 6 1.1275 4.1122 2.5874 11 1 0.1514 3.7439 2.9034 12 6 2.1489 3.8048 3.6520 13 1 1.8386 3.3603 4.5860 14 6 3.4798 4.0913 3.4334 15 7 3.8528 4.6682 2.3119 16 14 4.7532 3.6599 4.7302 17 1 4.0813 3.0225 5.8910 18 1 5.7461 2.7173 4.1548 19 1 5.4447 4.8963 5.1756 20 6 1.0565 5.6022 2.3738 21 6 1.6514 6.4596 3.2804 22 6 1.5901 7.8262 3.0820 23 6 0.9261 8.3358 1.9819 24 6 0.3268 7.4787 1.0780 25 6 0.3919 6.1119 1.2740 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.4871 1.5660 2.0462 32 1 4.7892 4.8694 2.1580 33 1 2.1666 6.0615 4.1421 34 1 2.0586 8.4959 3.7881 35 1 0.8760 9.4038 1.8284 36 1 -0.1916 7.8768 0.2183 37 1 -0.0767 5.4422 0.5680 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521655825.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:05 Heat of formation + Delta-G solvation = -9.588390 kcal Electronic energy + Delta-G solvation = -21029.885005 eV Core-core repulsion = 17964.192499 eV Total energy + Delta-G solvation = -3065.692506 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86283 -39.39978 -37.86885 -36.08940 -35.48134 -32.94538 -32.53901 -31.31136 -29.31902 -27.92069 -25.67149 -22.97939 -22.76117 -22.34784 -21.04024 -19.12828 -18.66236 -17.43060 -17.25959 -16.79896 -16.70483 -15.65772 -15.36479 -15.15650 -14.81801 -14.58079 -14.37177 -14.27923 -13.99037 -13.92438 -13.70779 -13.47865 -13.03257 -12.91787 -12.86537 -12.54154 -12.49899 -12.26556 -11.95023 -11.75734 -11.70166 -11.39388 -11.13929 -10.67315 -10.19472 -9.95878 -9.33975 -9.06318 -8.10492 -6.27387 0.91288 0.96904 1.33253 1.41467 1.47568 1.59639 1.79862 2.28202 2.43035 2.85162 3.11245 3.20860 3.39859 3.95943 4.16967 4.36875 4.39237 4.50288 4.54769 4.66430 4.72522 4.84835 4.97522 5.05317 5.12379 5.20866 5.23318 5.31469 5.49486 5.57737 5.59215 5.68388 5.80706 5.93509 5.97160 6.01050 6.45171 6.56422 6.58035 6.76389 7.03950 7.41810 7.88212 8.86581 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014802 B = 0.008307 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.130156 B = 3369.715051 C = 4483.524471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C 0.244 3.756 4 H 0.122 0.878 5 C 0.218 3.782 6 N -0.490 5.490 7 N -0.713 5.713 8 C 0.552 3.448 9 O -0.574 6.574 10 C 0.049 3.951 11 H 0.083 0.917 12 C -0.525 4.525 13 H 0.077 0.923 14 C 0.042 3.958 15 N -0.868 5.868 16 Si 0.926 3.074 17 H -0.249 1.249 18 H -0.304 1.304 19 H -0.290 1.290 20 C -0.037 4.037 21 C -0.088 4.088 22 C -0.155 4.155 23 C -0.144 4.144 24 C -0.147 4.147 25 C -0.115 4.115 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.414 0.586 32 H 0.248 0.752 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.644 -5.886 -1.177 12.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C 0.135 3.865 4 H 0.139 0.861 5 C -0.101 4.101 6 N -0.168 5.168 7 N -0.367 5.367 8 C 0.342 3.658 9 O -0.452 6.452 10 C 0.028 3.972 11 H 0.100 0.900 12 C -0.563 4.563 13 H 0.095 0.905 14 C -0.163 4.163 15 N -0.503 5.503 16 Si 0.753 3.247 17 H -0.173 1.173 18 H -0.231 1.231 19 H -0.216 1.216 20 C -0.038 4.038 21 C -0.106 4.106 22 C -0.173 4.173 23 C -0.161 4.161 24 C -0.165 4.165 25 C -0.133 4.133 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.251 0.749 32 H 0.058 0.942 33 H 0.128 0.872 34 H 0.139 0.861 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.662 -5.324 -2.113 10.385 hybrid contribution 1.290 -0.088 0.905 1.578 sum -7.372 -5.412 -1.209 9.225 Atomic orbital electron populations 1.21735 0.92486 1.03247 1.02828 1.21769 0.98415 0.89912 1.04976 1.18716 0.78654 0.98188 0.90978 0.86067 1.30808 0.96699 0.90980 0.91654 1.81052 1.15155 1.10764 1.09856 1.45779 1.71256 1.07184 1.12495 1.21145 0.73456 0.81358 0.89829 1.90544 1.51497 1.64478 1.38690 1.18006 0.97988 0.89542 0.91676 0.89970 1.20965 0.90670 1.42918 1.01763 0.90492 1.25487 1.00135 0.94481 0.96149 1.70210 1.15822 1.39513 1.24733 0.85988 0.80125 0.77462 0.81084 1.17264 1.23123 1.21625 1.19951 0.94009 0.96302 0.93496 1.21122 0.96934 0.92714 0.99838 1.21284 1.01417 0.95390 0.99209 1.21160 0.99770 0.99881 0.95337 1.21204 1.01885 0.93435 0.99963 1.21086 1.00020 0.95354 0.96852 0.92152 0.92175 0.90115 0.89812 0.88433 0.74885 0.94247 0.87196 0.86109 0.84811 0.85243 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.80 71.98 0.71 -1.39 16 2 C -0.11 -2.01 5.43 30.59 0.17 -1.84 16 3 C 0.24 7.10 2.41 43.18 0.10 7.21 16 4 H 0.12 3.56 7.58 -2.39 -0.02 3.54 16 5 C 0.22 8.36 14.93 89.44 1.34 9.69 16 6 N -0.49 -21.93 18.54 20.00 0.37 -21.56 16 7 N -0.71 -23.94 4.39 -451.21 -1.98 -25.93 16 8 C 0.55 23.66 5.40 87.66 0.47 24.14 16 9 O -0.57 -28.60 13.62 -3.04 -0.04 -28.64 16 10 C 0.05 2.13 2.77 -13.03 -0.04 2.09 16 11 H 0.08 3.11 8.14 -2.38 -0.02 3.09 16 12 C -0.53 -24.22 7.11 25.60 0.18 -24.04 16 13 H 0.08 3.37 7.81 -2.91 -0.02 3.35 16 14 C 0.04 2.11 4.01 84.66 0.34 2.45 16 15 N -0.87 -48.42 10.90 21.45 0.23 -48.18 16 16 Si 0.93 41.67 29.54 68.60 2.03 43.70 16 17 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 18 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 20 C -0.04 -1.67 4.51 -19.87 -0.09 -1.76 16 21 C -0.09 -4.02 8.21 22.27 0.18 -3.84 16 22 C -0.15 -6.24 10.05 22.27 0.22 -6.01 16 23 C -0.14 -5.28 10.05 22.27 0.22 -5.05 16 24 C -0.15 -5.60 10.05 22.27 0.22 -5.37 16 25 C -0.11 -4.92 8.21 22.27 0.18 -4.74 16 26 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.95 7.75 -2.39 -0.02 0.93 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.41 12.01 8.49 -92.71 -0.79 11.22 16 32 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 33 H 0.11 5.29 6.04 -2.91 -0.02 5.27 16 34 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 35 H 0.13 3.95 8.06 -2.91 -0.02 3.92 16 36 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 37 H 0.11 4.51 7.02 -2.91 -0.02 4.49 16 Total: -1.00 -68.16 319.12 5.12 -63.04 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.30 Total: 26.06 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 4.22 Total: -8.49 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -1.38 Total: -95.67 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.04 Total: -28.64 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -68.16 5.12 -63.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521655825.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.451 kcal (2) G-P(sol) polarization free energy of solvation -68.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds