Wall clock time and date at job start Mon Mar 30 2020 01:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46768 * 2 1 4 4 C 1.47195 * 109.47215 * 239.99749 * 2 1 3 5 5 N 2.60792 * 109.47215 * 239.99899 * 2 1 3 6 6 N 1.46507 * 109.47375 * 119.99428 * 2 1 3 7 7 C 1.46500 * 119.99315 * 60.00319 * 6 2 1 8 8 C 1.34771 * 120.00117 * 240.00362 * 6 2 1 9 9 O 1.21284 * 119.99589 * 185.76482 * 8 6 2 10 10 C 1.50691 * 120.00363 * 5.76731 * 8 6 2 11 11 H 1.08998 * 109.47323 * 51.27901 * 10 8 6 12 12 C 1.50700 * 109.46953 * 291.28257 * 10 8 6 13 13 H 1.08007 * 120.00362 * 329.14040 * 12 10 8 14 14 C 1.37886 * 120.00368 * 149.13700 * 12 10 8 15 15 N 1.31510 * 120.00258 * 186.56636 * 14 12 10 16 16 Si 1.86796 * 119.99609 * 6.56647 * 14 12 10 17 17 H 1.48498 * 109.47041 * 92.07120 * 16 14 12 18 18 H 1.48503 * 109.47353 * 212.07275 * 16 14 12 19 19 H 1.48500 * 109.47392 * 332.07416 * 16 14 12 20 20 C 1.50698 * 109.47385 * 171.28375 * 10 8 6 21 21 C 1.38234 * 119.99866 * 67.72250 * 20 10 8 22 22 C 1.38239 * 119.99804 * 179.80831 * 21 20 10 23 23 C 1.38239 * 120.00004 * 0.40035 * 22 21 20 24 24 C 1.38229 * 119.99691 * 359.85275 * 23 22 21 25 25 C 1.38227 * 119.99981 * 247.99295 * 20 10 8 26 26 H 1.08998 * 109.46552 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47003 * 60.00346 * 1 2 3 28 28 H 1.09003 * 109.47219 * 299.99815 * 1 2 3 29 29 H 1.08992 * 109.47258 * 85.56469 * 7 6 2 30 30 H 1.09009 * 109.46751 * 205.56114 * 7 6 2 31 31 H 1.09001 * 109.47535 * 325.55706 * 7 6 2 32 32 H 0.96994 * 120.00239 * 179.97438 * 15 14 12 33 33 H 1.08001 * 120.00268 * 359.97438 * 21 20 10 34 34 H 1.07998 * 120.00021 * 180.22405 * 22 21 20 35 35 H 1.07995 * 119.99850 * 179.82838 * 23 22 21 36 36 H 1.08008 * 119.99692 * 179.97438 * 24 23 22 37 37 H 1.08006 * 120.00365 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2294 -2.1293 6 7 2.0184 -0.6905 1.1963 7 6 1.6645 -2.0931 1.4281 8 6 2.7932 -0.0354 2.0834 9 8 3.2833 -0.6332 3.0179 10 6 3.0505 1.4397 1.9142 11 1 2.1021 1.9617 1.7873 12 6 3.9132 1.6629 0.6989 13 1 4.6327 0.9140 0.4023 14 6 3.7840 2.8233 -0.0347 15 7 4.4414 2.9633 -1.1651 16 14 2.6753 4.1965 0.5773 17 1 3.4706 5.1477 1.3945 18 1 2.0873 4.9124 -0.5833 19 1 1.5866 3.6210 1.4073 20 6 3.7563 1.9699 3.1355 21 6 5.0516 1.5739 3.4116 22 6 5.7005 2.0634 4.5298 23 6 5.0511 2.9423 5.3764 24 6 3.7540 3.3342 5.1031 25 6 3.1065 2.8478 3.9827 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5138 0.8900 29 1 2.3716 -2.7373 0.9057 30 1 1.7008 -2.3051 2.4967 31 1 0.6578 -2.2804 1.0546 32 1 4.3502 3.7794 -1.6812 33 1 5.5577 0.8843 2.7523 34 1 6.7138 1.7568 4.7436 35 1 5.5571 3.3225 6.2515 36 1 3.2465 4.0206 5.7647 37 1 2.0931 3.1541 3.7692 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001534405196.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:45 Heat of formation + Delta-G solvation = 6.550995 kcal Electronic energy + Delta-G solvation = -21185.536720 eV Core-core repulsion = 18120.544070 eV Total energy + Delta-G solvation = -3064.992650 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.34646 -39.62551 -38.18932 -36.33373 -35.55788 -33.35872 -31.90234 -31.58235 -29.94585 -27.78583 -25.70412 -24.69094 -23.32608 -22.36566 -20.69439 -19.13843 -18.66607 -18.24560 -17.36818 -16.59603 -16.43962 -15.96805 -15.62880 -15.47832 -15.01011 -14.86890 -14.44362 -14.23470 -14.08523 -14.04596 -13.77733 -13.67668 -13.38607 -13.10247 -12.94649 -12.86284 -12.68656 -12.64930 -12.11261 -11.99777 -11.89291 -11.53042 -11.37851 -10.89267 -10.54334 -9.85039 -9.60040 -9.34492 -8.32647 -6.42038 0.67411 0.73851 1.34836 1.37435 1.46262 1.51179 1.74891 1.84617 2.32602 2.41116 2.96763 2.99166 3.15917 3.88210 4.09796 4.16673 4.23631 4.30736 4.36811 4.44386 4.52269 4.57971 4.64356 4.83463 4.85681 4.91803 4.94617 4.98342 5.20667 5.29376 5.36128 5.41288 5.57726 5.73991 5.78434 5.97179 6.18718 6.28906 6.38425 6.53241 6.60916 7.20390 7.27446 8.81206 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.016193 B = 0.008722 C = 0.006885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.754981 B = 3209.654407 C = 4065.578484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.221 3.779 3 H 0.143 0.857 4 C 0.229 3.771 5 N -0.475 5.475 6 N -0.606 5.606 7 C 0.078 3.922 8 C 0.538 3.462 9 O -0.572 6.572 10 C 0.022 3.978 11 H 0.095 0.905 12 C -0.502 4.502 13 H 0.026 0.974 14 C 0.040 3.960 15 N -0.928 5.928 16 Si 0.909 3.091 17 H -0.276 1.276 18 H -0.280 1.280 19 H -0.207 1.207 20 C -0.061 4.061 21 C -0.102 4.102 22 C -0.138 4.138 23 C -0.136 4.136 24 C -0.125 4.125 25 C -0.147 4.147 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.271 0.729 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.072 0.352 9.410 14.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.114 3.886 3 H 0.160 0.840 4 C -0.090 4.090 5 N -0.153 5.153 6 N -0.340 5.340 7 C -0.064 4.064 8 C 0.328 3.672 9 O -0.451 6.451 10 C 0.001 3.999 11 H 0.112 0.888 12 C -0.540 4.540 13 H 0.045 0.955 14 C -0.161 4.161 15 N -0.565 5.565 16 Si 0.732 3.268 17 H -0.202 1.202 18 H -0.205 1.205 19 H -0.129 1.129 20 C -0.062 4.062 21 C -0.120 4.120 22 C -0.156 4.156 23 C -0.154 4.154 24 C -0.143 4.143 25 C -0.165 4.165 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.146 0.854 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.211 -0.690 8.356 13.212 hybrid contribution 0.604 0.557 -0.313 0.879 sum -9.606 -0.133 8.043 12.530 Atomic orbital electron populations 1.22239 0.88111 1.05163 1.05768 1.19180 0.97280 0.96883 0.75248 0.84006 1.29974 0.91895 0.92484 0.94622 1.81067 1.09834 1.11338 1.13076 1.47764 1.51696 1.13178 1.21324 1.21800 1.01639 0.79963 1.02956 1.21138 0.75348 0.90554 0.80113 1.90587 1.50003 1.70414 1.34086 1.18604 0.98503 0.89784 0.93049 0.88755 1.20332 1.21227 1.04671 1.07745 0.95523 1.25707 0.96951 0.99803 0.93681 1.70022 1.43742 1.28142 1.14562 0.86299 0.81322 0.79994 0.79217 1.20199 1.20522 1.12895 1.20116 0.94811 0.96520 0.94771 1.20835 0.95222 0.99065 0.96928 1.21330 1.00405 0.98748 0.95096 1.21341 0.95529 0.98360 1.00160 1.21391 0.95362 1.00325 0.97216 1.21322 1.00603 0.99027 0.95553 0.89755 0.88854 0.88125 0.94691 0.90292 0.87485 0.91996 0.89750 0.85369 0.83523 0.83208 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.12 71.98 0.66 -2.30 16 2 C 0.22 6.94 2.59 43.18 0.11 7.05 16 3 H 0.14 5.15 4.36 -2.38 -0.01 5.14 16 4 C 0.23 8.53 14.43 89.44 1.29 9.82 16 5 N -0.48 -19.90 18.54 20.00 0.37 -19.53 16 6 N -0.61 -20.51 2.74 -832.81 -2.28 -22.79 16 7 C 0.08 2.13 9.81 127.77 1.25 3.39 16 8 C 0.54 22.11 6.91 87.66 0.61 22.71 16 9 O -0.57 -26.30 14.91 -3.04 -0.05 -26.34 16 10 C 0.02 0.92 1.06 -13.04 -0.01 0.90 16 11 H 0.09 3.49 4.54 -2.39 -0.01 3.48 16 12 C -0.50 -25.33 6.21 25.60 0.16 -25.17 16 13 H 0.03 1.60 8.06 -2.91 -0.02 1.58 16 14 C 0.04 2.02 5.08 84.66 0.43 2.45 16 15 N -0.93 -52.67 13.96 21.45 0.30 -52.37 16 16 Si 0.91 36.76 26.82 68.60 1.84 38.60 16 17 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 18 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.21 -6.70 5.87 99.48 0.58 -6.12 16 20 C -0.06 -2.55 3.86 -19.87 -0.08 -2.63 16 21 C -0.10 -4.43 8.21 22.27 0.18 -4.25 16 22 C -0.14 -4.92 10.05 22.27 0.22 -4.70 16 23 C -0.14 -4.09 10.05 22.27 0.22 -3.86 16 24 C -0.13 -3.72 10.05 22.27 0.22 -3.50 16 25 C -0.15 -5.11 9.13 22.27 0.20 -4.91 16 26 H 0.08 1.30 6.69 -2.39 -0.02 1.28 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 2.19 7.38 -2.38 -0.02 2.17 16 31 H 0.11 2.02 6.44 -2.39 -0.02 2.01 16 32 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 33 H 0.08 4.10 7.84 -2.91 -0.02 4.08 16 34 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 35 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 36 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 37 H 0.13 3.91 7.96 -2.91 -0.02 3.89 16 Total: -1.00 -69.78 313.77 6.62 -63.16 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.96 Total: 24.27 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 5.47 Total: -5.01 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -1.61 Total: -94.69 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.05 Total: -26.34 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 1.84 Total: 38.60 kcal Total: -69.78 6.62 -63.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534405196.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.715 kcal (2) G-P(sol) polarization free energy of solvation -69.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds